Jin-Tai Yu’s research while affiliated with Fudan University and other places

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Publications (699)


Performance of blood biomarkers in internal jugular vein for Alzheimer disease pathologies: the Delta Study
  • Preprint

March 2025

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12 Reads

Jun Wang

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Dong-Yu Fan

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Shan Huang

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Background Systemic factors confound blood tests for the diagnosis of Alzheimer disease (AD). The Delta study explored whether blood biomarkers from the vein proximal to the brain perform better in detecting cerebral AD pathologies. Methods Blood was collected from the internal jugular vein (IJV) and median cubital vein (MCV) in the discovery (n=371) and validation (n=92) cohorts. AD biomarkers were measured with Lumipulse G and Simoa methods. Aβ and tau PET imaging and cerebrospinal fluid (CSF) biomarkers were used to evaluate brain pathologies. Results The levels of Aβ42, Aβ40, p-tau217, p-tau181, GFAP and NfL were higher in the IJV than MCV and highly correlated between the two sites. IJV-Aβ42/40 had stronger correlations with Aβ PET Centiloids and tau PET meta-temporal SUVR than MCV-Aβ42/40. In detecting cerebral Aβ positivity, IJV-Aβ42/40 demonstrated a significantly higher accuracy (79.9% to 92.9% vs. 72.4% to 88.8%) and a lower percentage of uncertain individuals (17.8% to 54.5% vs. 31.3% to 70.1%) than MCV-Aβ42/40. Moreover, the diagnostic accuracy of Lumipulse G IJV-Aβ42/40 (88.2% to 92.9%) was statistically equivalent to that of MCV-p-tau217 (90.2% to 94.3%), although the intermediate percentage of IJV-Aβ42/40 was higher (17.8% to 34.0% vs. 0.7% to 17.5%) than MCV-p-tau217. These findings were verified in the validation cohort. Discussion IJV-Aβ42/40 performs better than MCV-Aβ42/40 in detecting cerebral AD pathologies, offering a novel perspective to reduce the impacts of systemic factors and comorbidities on blood tests.


The overall study design. a) Data used in the study, including chronic pain, plasma proteins, genotype data, and pain‐related traits. i) Chronic pain was measured at baseline and online follow‐up, including six body sites: head, neck or shoulder, back, stomach or abdominal, hip, and knee. ii) Plasma proteins were divided into four categories: cardiometabolic, inflammation, neurology, and oncology. iii) Genotype data were used in the genome‐wide association analysis. iv) Pain‐related phenotypes included blood indicators (liver function, renal function, endocrine, immune, joint, and blood cell), lung function, neuropsychiatric diseases, digestive diseases, and brain volumes. b) Analysis process in the study. i) Association analysis between chronic pain and plasma proteins. ii) Biological function analysis of pain‐related proteins, including ontology pathway and tissue expression analyses. iii) Phenome‐wide association analysis of pain‐related proteins. iv) Mendelian randomization of chronic pain and proteins. v) Classification of chronic pain at baseline. vi) Prediction of pain spreading after a ten‐year follow‐up.
Relationship between chronic pain and plasma proteins. a) Scatter plots show the associations between 2923 proteins and chronic pain at six body sites. Logistic regression model was used to examine the association between protein levels and chronic pain. Analyses were adjusted for age, sex, BMI, race, Townsend deprivation index, highest educational qualification, assessment center, batch, and sample age. P‐values shown are two‐sided and not adjusted for multiple comparisons. The gray horizontal line indicates the significance threshold (P < 2.85 × 10⁻⁶), and the colored dots above the line indicate that the protein was significantly associated with the disease. The vertical line represents a dividing line with an odds ratio of 1, and the point to the right of the line indicates that the higher level of this protein increased the risk of disease. b) Plots show the proportion of each category of proteins significantly associated with pain, including four categories: cardiometabolic, inflammation, neurology, and oncology. c) Venn diagram shows the overlap of proteins significantly associated with pain at different body sites.
Biological function of pain‐related proteins. a) Plot shows the pathway enrichment of proteins related to stomach or abdominal pain. Analyses were conducted by R package clusterProfiler, and gene set databases included Gene Ontology and Kyoto Encyclopedia of Genes and Genomes. The GO terms were divided into three categories: Biological Process, Cellular Component, and Molecular Function. P‐values shown are two‐sided and not adjusted for multiple comparisons. b) Plot shows the pathway enrichment of proteins related to hip pain. c) Plot shows the pathway enrichment of all 474 pain‐related proteins. d) Plot shows the tissue‐specific type expression of pain‐related proteins. Analyses were performed by the GENE2FUNC implemented in Functional Mapping and Annotation (FUMA). The tissue analyses used the GTEx v8 database and contained 54 tissue types. P‐values shown are two‐sided and not adjusted for multiple comparisons.
Phenome‐wide association of pain‐related proteins. Phenome‐wide association used linear and logistic regression models to examine associations between protein levels and phenotypes. Analyses were adjusted for age, sex, BMI, race, Townsend deprivation index, highest educational qualification, assessment center, batch, sample age, and total intracranial volume (only used in the brain volume analysis). a) Proportion of pain‐related proteins significantly associated with each blood indicator category. b) Proportion of pain‐related proteins significantly associated with each phenotype in lung function, neuropsychiatric diseases, and digestive diseases. c,d) Proportion of pain‐related proteins significantly associated with each cortical and subcortical region volume. N/S, neck or shoulder; S/A, stomach or abdominal.
Mendelian randomization (MR) analysis between chronic pain and proteins. Plot shows the top five associated proteins for pain in each body site in the MR analysis using the inverse variance weighted (IVW) method. Two‐sample MR analysis was performed using R package TwoSampleMR, with the protein as the exposure and chronic pain as the outcome. P‐values shown are two‐sided and not adjusted for multiple comparisons. The red font indicates that the association remained significant after FDR correction (PFDR < 0.05).

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Large‐Scale Plasma Proteomics to Profile Pathways and Prognosis of Chronic Pain
  • Article
  • Full-text available

March 2025

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59 Reads

While increasing peripheral mechanisms related to chronic pain, the plasma proteomics profile associated with it and its prognosis remains elusive. This study utilizes 2923 plasma proteins and chronic pain of 51 644 participants from UK Biobank and finds 474 proteins linked to chronic pain in six sites: head, neck or shoulder, back, stomach or abdominal, hip, and knee, with 11 proteins sharing across pain sites. The identified proteins are largely enriched in immune and metabolic pathways and highly expressed in tissues like lungs and small intestines. Phenome‐wide analysis highlights the significance of pain‐related proteome on diverse facets of human health, and in‐depth Mendelian randomization validates 10 proteins (CD302, RARRES2, TNFRSF1B, BTN2A1, TNFRSF9, COL18A1, TNF, CD74, TNFRSF4, and BTN2A1) as markers of chronic pain. Furthermore, protein sets capable of classifying pain patients and healthy participants, particularly performing best in hip pain (area under curve, AUC = 0.725), are identified. Interestingly, the prediction of pain spreading over ten years achieves an AUC of 0.715, with leptin identified as a crucial predictor. This study delineates proteins associated with various pain conditions and identifies proteins capable of classifying pain and predicting pain spreading, offering benefits for both research and clinical practice.

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Clinical, radiological, pathological and prognostic features of general paresis: a cohort study

February 2025

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11 Reads

Brain

General paresis is a rare type of syphilis characterized by progressive cognitive impairment and psychiatric syndromes. It is often misdiagnosed because of its rarity and similarity with other diseases. We aimed to comprehensively investigate the clinical, radiological, pathological, and prognostic features of general paresis, and compare it with other dementias. Between August 2019 and January 2024, patients were recruited from a Memory Clinic Setting of National Center for Neurological Disorders in China. Participants underwent clinical evaluation, laboratory testing, and imaging, and were followed after treatment. Comparative analysis was conducted on clinical features and neuropsychiatric assessments, while brain image features were investigated using linear regression models and SuStaIn models. Seventy-eight patients were included, with 90% being male. The median duration from symptom onset to the first diagnostic visit was 15 months. Sixty-three patients were followed for an average of 1.4 years. Cognitive impairment emerged as the most common symptom, with half of the patients co-existed with motor symptoms. Impairment across all cognitive domains accompanied by positive psychiatric symptoms raised suspicion for general paresis, and distinguishing it from Alzheimer’s disease, frontotemporal dementia, and anti-LGI1 encephalitis-related dementia. Common imaging abnormalities in general paresis included whole brain atrophy and cortical hypointensity. The hippocampal-predominant and hippocampal-sparing atrophy subtypes were identified. Autoimmune responses in general paresis were demonstrated through the detection of autoimmune encephalitis antibodies in 11% of patients. Pathological amyloid changes were observed in 26% of patients, while elevated total tau levels were found in 30%. Seventy percent of patients showed improvement following treatment, with a reduction in the number of symptoms observed across all cases. This study identifies specific clinical syndromes and radiological features of general paresis and refines the understanding of its prognosis. We provide clues to distinguish general paresis from other dementias, facilitating early diagnosis and treatment. The role of novel pathological changes in general paresis needs to be further studied.


Neuronal FAM171A2 mediates α-synuclein fibril uptake and drives Parkinson's disease

February 2025

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180 Reads

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2 Citations

Science

Neuronal accumulation and spread of pathological α-synuclein (α-syn) fibrils are key events in Parkinson's disease (PD) pathophysiology. However, the neuronal mechanisms underlying the uptake of α-syn fibrils remain unclear. In this work, we identified FAM171A2 as a PD risk gene that affects α-syn aggregation. Overexpressing FAM171A2 promotes α-syn fibril endocytosis and exacerbates the spread and neurotoxicity of α-syn pathology. Neuronal-specific knockdown of FAM171A2 expression shows protective effects. Mechanistically, the FAM171A2 extracellular domain 1 interacts with the α-syn C terminus through electrostatic forces, with >1000 times more selective for fibrils. Furthermore, we identified bemcentinib as an effective blocker of FAM171A2–α-syn fibril interaction with an in vitro binding assay, in cellular models, and in mice. Our findings identified FAM171A2 as a potential receptor for the neuronal uptake of α-syn fibrils and, thus, as a therapeutic target against PD.


Study overview
In step 1, we leveraged plasma proteomic data (2,920 proteins) from 51,804 participants free of PD and other all-cause parkinsonism at baseline. During a median follow-up of 14.45 years, 859 PD participants were diagnosed with PD. In step 2, and unbiased proteome-wide association analysis was first conducted to identify PD-related proteins using Cox proportional hazard models. The biological functions of PD-related proteins and the protein categories generated from the protein-protein interaction (PPI) network were gleaned from pathway enrichment analysis. In step 3, we depicted the fluctuations of these PD-linked proteins from 15 years before diagnosis and modeled the temporal sequence of their changes. Pathophysiological evolution was accordingly revealed by putting proteins into the biological context obtained in step 2. In step 4, the correlations between these proteins and PD prodromal symptoms and PD-signature brain regions were then assessed. RBD, rapid eye movement sleep behavior disorder. In step 5, we explored the application of PD-related proteins as biomarkers predicting future PD risk and as potential drug targets supported by two-sample MR. The protein icon in Fig. 1 was created with BioRender (Zhang, Y. (2022) BioRender.com/o97h873).
Proteins associated with incident PD and their functional highlights
a–c, Volcano plots displaying the HR (x axis) and statistical significance (−log10 of two-sided P values, y axis) for the associations of standardized protein abundance with incident PD (a), incident PD occurring within 5 years of follow-up (b) and beyond 5 years of follow-up (c). Proteins above the horizontal dotted line had Bonferroni-corrected P < 0.05. Red dots represent risk proteins, whereas blue dots represent protective effects. HRs were derived from Cox proportional hazards regression models (two-sided Wald test) adjusted for baseline age, sex, ethnicity, TDI, BMI, smoking status, frequency of alcohol intake, fasting time, season and sample age. P values were two sided and Bonferroni corrected. d–f, Top 15 enriched GO biological pathways with adjusted P < 0.05. The analyses were conducted using the clusterProfiler package (hypergeometric test) and were adjusted for multiple testing using the Benjamini–Hochberg method. The shade of color corresponds to the magnitude of statistical significance (−log10 of P values). g, String-db network of PD-associated proteins in (a–c). Fastgreedy clustering identified six functional categories. Non-clustered orphan proteins are listed in Supplementary Table 15. The functional summary of the proteins in categories is derived from GO enrichment. Edge thickness: STRING combined score, with thicker lines indicating larger values of interaction strength. Node color: protein’s significance at different time intervals. Node size: number of interactions. ECM, extracellular matrix.
Temporal evolutions of plasma proteins before diagnosis of PD and their trajectory clustering
a, Z-score changes of PD-associated proteins. Protein levels were Z-scored using the mean and the standard deviation of that plasma protein in matched controls (Methods) as the reference. The trajectories were estimated by LOESS. Heat represents absolute Z scores greater than 0.30 (red, Z score higher than 0; blue, Z score less than 0). Proteins were mapped to functional categories shown in Fig. 2g. Unmapped proteins were annotated by GeneCards GO terms (Supplementary Table 15). Functional descriptions with an asterisk belong to category 4 in Fig. 2g, and we abbreviated the term ‘dendritic cell development lineage pathway’ in the description. b, Overall depiction of the trajectory displaying the years before PD diagnosis (x axis) and protein levels (Z score, y axis) for the associated proteins. c–e, Protein trajectories of identified clusters. Clusters were grouped using unsupervised hierarchical clustering, with the thicker lines reflecting the average trajectory in each cluster. The number of proteins and the top enriched pathways (from GO and Reactome databases) are displayed.
Associations between PD-related proteins and PD prodromal symptoms and brain structures
a–h, Volcano plots displaying the HRs (x axis) and statistical significance (−log10 of two-sided P values, y axis) for the associations of standardized protein abundance with PD prodromal symptoms, including RBD (a), urinary incontinence (b), constipation (c), orthostatic hypotension (d), anxiety (e), depression (f), hyposmia (g) and erectile dysfunction (h). Proteins above the horizontal dotted line had Bonferroni-corrected P < 0.05. Red dots represent risk proteins, whereas blue dots represent protective effects. HRs were derived from Cox proportional hazards regression models (two-sided Wald test) adjusted for baseline age, sex, ethnicity, TDI, BMI, smoking status, frequency of alcohol intake, fasting time, season and sample age. P values were two sided and Bonferroni corrected. i, Heatmap showing associations between proteins and PD-signature brain measures. Before being assessed using multiple linear regression models, both PD-related proteins and brain measures were standardized. The same covariates in Cox model, imaging sites and intracranial volume additionally for volumetric measures were adjusted. The analyses were conducted using multiple linear regression models (two-sided t-test), and P values were two sided and Bonferroni corrected (*P < 0.05, **P < 0.01, and ***P < 0.001). j, Number (N) of significantly associated proteins (P < 0.05 after Bonferroni correction) in different brain regions measured in volumes.
Predictor selection and importance, and ROC curves for the prediction of future PD
a, Protein panel selection strategy implemented in the derivation set. Proteins were preselected through Cox proportional hazard regression. The bar chart illustrates the importance of the sorted proteins based on their contributions to the prediction of future PD. The line chart demonstrates cumulative AUCs (right axis) upon the inclusion of protein one by each iteration. Shaded regions indicate 95% confidence intervals derived from 10-fold cross-validation within the derivation set. Selected proteins are marked in red, which was determined as having no incremental performance (DeLong’s test P value > 0.05, two-sided test) in the next two consecutive iterations. b, SHAP plot illustrated the contribution of predictors. The wider the range, the greater the contributions. The color of the horizontal bars denotes the magnitude of predictors, which was coded in a gradient color from blue (low) to red (high). The direction on the x axis indicates the likelihood of developing PD (right) or being healthy (left). c–f, Receiver-operating curves derived in the internal replication cohort and external cohort showing the performance of the top 16 predictive proteins and their combinations with demographic measures (age, sex, ethnicity, smoking status, alcohol consumption frequency and BMI) to predict future PD; reported AUCs and CIs were derived from bootstrap strategy with 1,000 iterations.
Large-scale proteomic analyses of incident Parkinson’s disease reveal new pathophysiological insights and potential biomarkers

February 2025

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135 Reads

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1 Citation

Nature Aging

The early pathophysiology of Parkinson’s disease (PD) is poorly understood. We analyzed 2,920 Olink-measured plasma proteins in 51,804 UK Biobank participants, identifying 859 incident PD cases after 14.45 years. We found 38 PD-related proteins, with six of the top ten validated in the Parkinson’s Progression Markers Initiative (PPMI) cohort. ITGAV, HNMT and ITGAM showed consistent significant association (hazard ratio: 0.11–0.57, P = 6.90 × 10⁻²⁴ to 2.10 × 10⁻¹¹). Lipid metabolism dysfunction was evident 15 years before PD onset, and levels of BAG3, HPGDS, ITGAV and PEPD continuously decreased before diagnosis. These proteins were linked to prodromal symptoms and brain measures. Mendelian randomization suggested ITGAM and EGFR as potential causes of PD. A predictive model using machine learning combined the top 16 proteins and demographics, achieving high accuracy for 5-year (area under the curve (AUC) = 0.887) and over-5-year PD prediction (AUC = 0.816), outperforming demographic-only models. It was externally validated in PPMI (AUC = 0.802). Our findings reveal early peripheral pathophysiological changes in PD crucial for developing early biomarkers and precision therapies.


Flow charts of categorization of ADNI subjects based on IWG-2 criteria. Diagnostic marker: Aβ1-42, T-tau, and P-tau181 in cerebrospinal fluid (CSF) or the tracer retention on amyloid imaging. AD, Alzheimer’s disease; MCI, mild cognitive impairment; CN, cognitively normal.
The relationship between MRI markers and Alzheimer’s disease progression. A) The correlation between left hippocampus volume and CDRSB scores in cross-section study. B) The correlation between right hippocampus volume and CDRSB scores in cross-section study. C) The change of left hippocampus volume over time in longitudinal study. D) The change of right hippocampus volume over time in longitudinal study. P-value was calculated in multiple liner regression model that viewed the volume of hippocampus (A and B) or the change percentage of volume (C and D) as dependent variable, CDRSB scores (A and B) or types of population (C and D) as independent variable, and follow-up time (C and D), age (A–D), gender (A–D), education (A–D), and APOE ɛ4 status (A–D) as covariates. CDRSB, The Clinical Dementia Rating scale Sum of Boxes; MRI, magnetic resonance imaging.
The relationship between FDG-PET markers and Alzheimer’s disease progression. A) The correlation between CMRgl in bilateral posterior cingulate and CDRSB scores in cross-section study. B) The change of CMRgl in bilateral posterior cingulate over time in longitudinal analysis. P-value was calculated in multiple liner regression model that viewed the CMRgl of bilateral posterior cingulate (A) or the change percentage of CMRgl (B) as dependent variable, CDRSB scores (A) or types of population (B) as independent variable, and follow-up time (B), age (A and B), gender (A and B), education (A and B), and APOE ɛ4 status (A and B) as covariates. CDRSB, The Clinical Dementia Rating scale Sum of Boxes; CMRgl, cerebral metabolic rate for glucose; FDG-PET, fluorodeoxyglucose-positron emission tomography.
Application of the IWG-2 Diagnostic Criteria for Alzheimer’s Disease to the ADNI

February 2025

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70 Reads

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24 Citations

Background The International Working Group (IWG) recently proposed the revised diagnostic criteria for Alzheimer’s disease (AD) to define and refine several types of AD, and to reclassify AD-related biomarkers into diagnostic and progression markers, but its performance is not known. Objective This study was designed to describe the application of the revised IWG criteria in the Alzheimer’s Disease Neuroimaging Initiative (ADNI) dataset, and to ascertain whether diagnostic and progression markers show significant differences in their relationships to AD severity and progression. Methods Based on the requirements of the refined criteria, 857 ADNI subjects with memory evaluation and at least one pathophysiological marker (CSF or amyloid imaging biomarkers) were eligible and reclassified in this study, and we calculated the associations of diagnostic (CSF and amyloid PET) and progression markers (MRI and fluorodeoxyglucose-PET) with AD severity and progression respectively. Results The majority (84.2% ) of ADNI AD group (n = 117) and 173 MCI (37.4% ) subjects in ADNI met the definition of typical AD; and 105 cognitively normal (41.0% ) individuals were diagnosed as asymptomatic AD. Furthermore, diagnostic and progression markers showed significant differences when correlated to AD severity and progression. Conclusion A large proportion of AD dementia subjects were categorized as typical AD, and the revised criteria could identify typical AD from MCI status as well as asymptomatic AD at the asymptomatic stage. Moreover, the significant differences between diagnostic and progression markers further supported the new biomarkers categorization in the refined criteria.


Schematic representation of potential roles of progranulin and partial tau-related processes. In microglia, haploinsufficiency causes increased production and release of progranulin and multiple cytokines in response to an inflammatory stimulus. Extracellular progranulin can be endocytosed through the sortilin receptor, and mediate neurite outgrowth. In neurons, progranulin influences the lysosome function and axonal transport. At synaptic and extra-synaptic sites, progranulin affects synapse structure and function. The aberrant phosphorylation of tau protein damage microtubule stabilization and axonal transport.
The proposed mechanisms of the hexanucleotide repeat expansion in C9ORF72. a) Haploinsufficiency because of the reduced expression of the allele gene containing the repeat expansion. b) RNA-mediated toxicity due to the aggregation of transcribed GGGGCC repeats and the sequestration of RNA-binding proteins. c) Accumulation of dipeptide repeat proteins (DPRs) from the repeat-associated non-AUG-initiated (RAN) translation.
Mechanisms implicated in MAPT, GRN and C9ORF72 expansions and their respective therapies. MAPT, microtubule-associated protein tau gene; GRN, progranulin gene; C9ORF72, hexanucleotide expansion in chromosome 9; GSK-3beta, glycogen synthase knase-3beta; CDK5, cyclin-dependent kinase-5; DYRK1A, dual specificity tyrosine phosphorylation-regulated kinase 1A; NAP, davunetide; MB, methylene blue; HSP70, heat shock protein 70; TMEM106B, transmembrane protein 106 B gene; nAChRs, nicotinic acetylcholine receptors; ASOs, antisense oligonucleotides.
Genetics of Frontotemporal Lobar Degeneration: From the Bench to the Clinic

February 2025

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41 Reads

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5 Citations

Frontotemporal lobar degeneration (FTLD) is a clinically heterogeneous neurodegenerative disease with a strong genetic component. In this review, we summarize most common mutations in MAPT, GRN, and C90RF72, as well as less common mutations in VCP, CHMP2B, TARDBP, FUS gene and so on. Several guidelines have been developed to help gene testing based on genotype–phenotype correlation, the underlying histopathological subtypes, and the neuroanatomic associations. Furthermore, we also summarize molecular pathways implicated by genes and novel targets for FTLD prevention and management in recent years.


Microstructural white matter injury contributes to cognitive decline: Besides amyloid and tau

February 2025

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29 Reads

The Journal of Prevention of Alzheimer s Disease

Background: Cognitive decline and the progression to Alzheimer's disease (AD) are traditionally associated with amyloid-beta (Aβ) and tau pathologies. This study aims to evaluate the relationships between microstructural white matter injury, cognitive decline and AD core biomarkers. Methods: We conducted a longitudinal study of 566 participants using peak width of skeletonized mean diffusivity (PSMD) to quantify microstructural white matter injury. The associations of PSMD with changes in cognitive functions, AD pathologies (Aβ, tau, and neurodegeneration), and volumes of AD-signature regions of interest (ROI) or hippocampus were estimated. The associations between PSMD and the incidences of clinical progression were also tested. Covariates included age, sex, education, apolipoprotein E4 status, smoking, and hypertension. Results: Higher PSMD was associated with greater cognitive decline (β=-0.012, P < 0.001 for Mini-Mental State Examination score; β<0, P < 0.05 for four cognitive domains) and a higher risk of clinical progression from normal cognition to mild cognitive impairment (MCI) or AD (Hazard ratio=2.11 [1.38-3.23], P < 0.001). These associations persisted independently of amyloid status. PSMD did not predict changes in Aβ or tau levels, but predicted changes in volumes of AD-signature ROI (β=-0.003, P < 0.001) or hippocampus (β=-0.002, P = 0.010). Besides, the whole-brain PSMD could predict cognitive decline better than regional PSMDs. Conclusions: PSMD may be a valuable biomarker for predicting cognitive decline and clinical progression to MCI and AD, providing insights besides traditional Aβ and tau pathways. Further research could elucidate its role in clinical assessments and therapeutic strategies.



Genome-wide association study unravels mechanisms of brain glymphatic activity

January 2025

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119 Reads

Brain glymphatic activity, as indicated by diffusion-tensor imaging analysis along the perivascular space (ALPS) index, is involved in developmental neuropsychiatric and neurodegenerative diseases, but its genetic architecture is poorly understood. Here, we identified 17 unique genome-wide significant loci and 161 candidate genes linked to the ALPS-indexes in a discovery sample of 31,021 individuals from the UK Biobank. Seven loci were replicated in two independent datasets. Genetic signals located at the 2p23.3 locus yielded significantly concordant effects in both young and aging cohorts. Genetic correlation and polygenic overlap analyses indicate a common underlying genetic mechanism between the ALPS-index, ventricular volumes, and cerebrospinal fluid tau levels, with GMNC (3q28) and C16orf95 (16q24.2) as the shared genetic basis. Our findings enhance the understanding of the genetics of the ALPS-index and provide insight for further research into the neurobiological mechanisms of glymphatic clearance activity across the lifespan and its relation to neuropsychiatric phenotypes.


Citations (35)


... Moreover, the overexpression of α-syn leads to an increase in ROS production at the cellular level and initiates a vicious cycle in which α-syn induces ROS and vice versa [46]. Recently, FAM171A2 has been recognized as a potential receptor involved in the neuronal uptake of α-syn fibrils, making it a promising therapeutic target for PD [47]. Our study focuses on mitochondrial oxidative stress mechanisms that are not directly related to α-synuclein internalization or FAM171A2 functioning. ...

Reference:

Desmodesmus Extract as a Mitochondrion-Targeted Neuroprotective Agent in Parkinson’s Disease: An In Vitro Study
Neuronal FAM171A2 mediates α-synuclein fibril uptake and drives Parkinson's disease
  • Citing Article
  • February 2025

Science

... LightGBM is a gradientboosting framework ideal for large, high-dimensional datasets, efficiently managing both categorical and continuous variables. 21,22 Unlike linear models like principal component modeling or orthogonal projection to latent structures discriminant analysis, which may struggle with complex, nonlinear interactions, LightGBM captures intricate relationships and handles missing values. Its leaf-wise tree growth improves speed and accuracy, making it particularly effective for proteomic data with complex protein interactions. ...

Plasma metabolic profiles predict future dementia and dementia subtypes: a prospective analysis of 274,160 participants

... This work comprehensively mapped the proteomic landscape of human health and disease, uncovering over 650 proteins associated with at least 50 diseases to construct disease diagnosis and prediction models. Additionally, it revealed 26 novel therapeutic drug targets [44]. In cancer research, Senuri et al. proposed a machine learning-based feature extraction workflow to identify high-performing protein markers for high-grade serous ovarian carcinoma (HGSOC) that used publicly available ovarian cancer tissue and serum proteomics datasets. ...

Atlas of the plasma proteome in health and disease in 53,026 adults
  • Citing Article
  • November 2024

Cell

... These advances open new avenues for uncovering complex relationships between biological entities and survival outcomes. For example, recent studies have identified protein or gene biomarkers associated with survival outcomes in patients with idiopathic pulmonary fibrosis [1], glioblastoma [2], hepatocellular carcinoma [3], small-cell lung carcinoma [4], cardiovascular diseases [5,6], Alzheimer's disease and related dementias [7], and oropharyngeal carcinoma [8], often using Cox proportional hazards (PH) regression models with or without penalization methods. ...

Whole exome sequencing analyses identified novel genes for Alzheimer's disease and related dementia

... These cognitive faculties are essential for maintaining independence and enhancing overall quality of life [1]. Both genetic [2,3] and environmental [4,5] variables exert a substantial influence on cognitive function. Notably, the rising global incidence of dementia-currently affecting over 55 million individuals and projected to reach 131 million by 2050-underscores the imperative to identify potentially modifiable lifestyle factors to formulate effective prevention strategies [6]. ...

Genome‐wide meta‐analysis identifies ancestry‐specific loci for Alzheimer's disease

... 30,31,50 We choose 29 autoimmune diseases (alopecia areata, ankylosing spondylitis, asthma, autoimmune hepatitis, autoimmune hypothyroidism, Behcet's disease, celiac disease, Crohn's diease, Graves' disease, Guillain-Barre syndrome, idiopathic thrombocytopenic purpura, lichen planus, multiple sclerosis, myasthenia gravis, myositis, narcolepsy, necrotizing vasculopathies, pernicious anaemia, primary biliary cirrhosis, psoriasis, psoriatic and enteropathic arthropathies, rheumatoid arthritis, sarcoidosis, scleroderma, Sjogren's syndrome, systemic lupus erythematosus, type I diabetes mellitus, ulcerative colitis, vitiligo) based on availability. 50,77 The purpose of selecting the top 200 genes is to focus on candidates that have shown some level of association or biological relevance in other studies, even if not all of them reach strict statistical significance thresholds. Genes may not be individually statistically significant but could still contribute meaningfully when considered as a group, especially if they are involved in similar pathways or biological processes. ...

Large-scale whole-exome sequencing analyses identified protein-coding variants associated with immune-mediated diseases in 350,770 adults

... Recent developments have facilitated extensive proteomic profiling of AD across brain tissues [3], including both bulk regions and specific neuropathological lesions, as well as in cerebrospinal fluid (CSF) [4] and blood samples [5]. Although many novel protein biomarkers have been identified in observational studies, definitive evidence remains elusive due to issues including multiplatform challenges, limited sample sizes, and inconsistencies in proteome coverage and reproducibility. ...

Multiplex cerebrospinal fluid proteomics identifies biomarkers for diagnosis and prediction of Alzheimer’s disease

Nature Human Behaviour

... We used the QQFE pVCF files provided by the UKB, in alignment with the full GRCh38 human 46 . Additional QC on genotype, variant and sample levels was carried out based on the standard QC 47 , as described in previous studies [47][48][49][50][51] and Supplementary Note. We defined an unrelated sample with a kinship coefficient less than 0.0884 (calculated by KING software 52 ), excluding second-degree or closer relatives. ...

Whole exome sequencing analysis identifies genes for alcohol consumption

... ;https://doi.org/10.1101https://doi.org/10. /2024 Multimodal studies of brain iron have derived new inferences on the relevance of changes on other measures, for example, using Whole Exome sequencing in UKB allowed the detection of 36 genes related to brain iron measured using QSM based on swMRI with 16 replicated in alternative datasets (Gong et al., 2024). ...

Whole-exome sequencing identifies protein-coding variants associated with brain iron in 29,828 individuals

... Autoimmune encephalitides are conditions of brain inflammation mediated by neuronal surface antibodies directed to neuronal surface epitopes, or by intracellular antibodies in the context of paraneoplastic encephalitis. Autoimmune encephalitides is being recognized as an important cause of rapidly progressive dementia [37,38]. To know more about the concept of autoimmune dementia, the reader is referred to the excellent review by Alessandro Dinoto and Eoin P. Flanagan in this same volume of Current Opinion in Psychiatry. ...

The Etiology of Rapidly Progressive Dementia: A 3-Year Retrospective Study in a Tertiary Hospital in China