Jin-Soo Kim’s research while affiliated with Kangwon National University and other places

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Publications (512)


National Dose Survey and Discussion on Establishing Diagnostic Reference levels for Dental Imaging in Korea
  • Article

March 2025

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3 Reads

Dentomaxillofacial Radiology

Jo-Eun Kim

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Jae-Jun Hwang

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Min-Suk Heo

Objectives This study aimed to establish updated diagnostic reference levels (DRLs) for dental imaging modalities in South Korea. Methods In cooperation with the Korea Disease Control and Prevention Agency, various types of institutions (dental clinics, dental hospitals, and dental university hospitals) were selected to investigate the status of diagnostic radiation equipment use. Subsequently, over 300 units were randomly selected for each imaging device type (intraoral, panoramic, and cone-beam CT [CBCT]) as measurement samples. DRLs were defined as the 75th percentile of the dose area product distribution. The differences in dose were analysed based on the type of institution, age of use, country of manufacture, and presence of a multifunction device. Results The national DRLs for dental imaging established in this survey were as follows: intraoral imaging at 48 mGy·cm2 for adults and 31 mGy·cm2 for children; panoramic imaging at 354 mGy·cm2 for adults and 224 mGy·cm2 for children; and CBCT at 1856 mGy·cm2 for adults and 1350 mGy·cm2 for children. Private dental clinics and hospitals recorded approximately twice the dose levels of university dental hospitals. CBCT devices in dental hospitals and those that have been in used for 5-10 years showed significantly high radiation doses. Conclusions The DRLs established through this study were found to be significantly increased, especially in adult and paediatric panoramic radiographs and paediatric CBCT images, compared with those in previous surveys; moreover, they were higher than those in other countries. The findings of this study can serve as a basis for national dose reduction efforts.



Quantification of pork consumption in OECD countries.
Architectural framework of the Xception model.
Architectural framework of the ConvNeXt-xlarge model.
Architectural framework of the ViT-H model.
Diagrammatic representation of the proposed methodology’s workflow.

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Deep Learning-Enhanced Diagnosis of Sow Pregnancy Through Low-Frequency Ultrasound Imaging
  • Article
  • Full-text available

January 2025

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30 Reads

The escalating demand for pork highlights the importance of swift and accurate pregnancy diagnosis in sows, a crucial factor in farm profitability. The prevalent use of low-frequency ultrasound devices in this context poses a challenge owing to the suboptimal resolution of the resultant images. This study introduces an innovative approach for sow pregnancy diagnosis using deep learning techniques to analyze low-frequency ultrasound images. Our methodology encompasses the development and comparative analysis of three distinct classification models: ViT-H, ConvNeXt-xlarge, and Xception. These models aim to improve diagnostic accuracy. AutoAugment was used to augment the data to expand the training dataset, thereby enhancing the robustness of the models under varied conditions. Results indicate a notable improvement in diagnostic performance, with the implementation of AutoAugment leading to significant achievements in the models, reflected by AUC values of 0.865, 0.856, and 0.866. These outcomes affirm the viability of deep learning in the effective management of sow pregnancies in livestock farms and suggest potential applications in broader animal husbandry contexts. This research marks a significant contribution to the evolution of agricultural technologies, presenting a scalable and efficacious solution for sow pregnancy diagnosis.

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Case report of cholesterol granuloma in the maxillary sinus

December 2024

Cholesterol granuloma is known to be a disease formed by hemosiderin and cholesterol crystals when bleeding occurs while ventilation and drainage are not well performed by inflammatory tissue. It is known to occur mainly inside the temporal bone that has been undergone pneumatization, and occurrences in the paranasal sinuses have been rarely reported. A 72-year-old female patient visited to our institution, complaining of a sensation that pus had been coming out of her upper right extraction sockets for the past few months ago. She underwent the extraction of her upper right first and second molars a year ago. In the CBCT image, a well-circumscribed and expansile cystic lesion was located in the right maxillary sinus, bulging posterolateral wall of the maxillary sinus, with amorphous internal calcification and sclerotic border. After surgical excision, the lesion was confirmed as cholesterol granuloma with massive ossification by the histopathological interpretation postoperatively.






Fig. 2 | Analysis of the training dataset. a Decomposition enthalpy (ΔH decomp ) distribution of 3159 density functional theory (DFT)-calculated data with respect to the number of unique elements in the B-site before (blue) and after (orange) including the mixing entropy term (at T = 298 K), respectively. b Difference in distribution of the decomposition energy with the existence of Ge element in the training dataset. Dashed lines indicate the mean value of each decomposition energy distribution.
Fig. 3 | Visualization of the training data set. a Decomposition enthalpy with mixing entropy term ðΔH decomp À TΔS mix Þ versus Bartel's tolerance factor (τ) and b histogram of bandgap with the number of data for indirect and non-indirect bandgap displayed. "Non-indirect" includes direct, metallic, and semi-metallic materials. c Pearson correlation coefficient between the four output properties and fractions of elements.
Fig. 4 | Validation of trained models. Parity plot between crystal graph convolution neural network (CGCNN)-predicted and DFT (PBESol)-calculated (a) ΔH decomp and b bandgap on the test set. c: Confusion matrix of classification test. "Non-indirect" includes direct, metallic, and semi-metallic materials.
Fig. 5 | ML-enabled search of alloyed perovskite systems. a CGCNN-predicted ΔH decomp À TΔS mix of a CsGe x Sn 1-x Br 3 and b CsGe x Hg y Sn 1-x-y Cl 3 systems in comparison with the training and DFT data (80 atoms). The variance of CGCNN data is represented as a line at each composition. In b, only the lowest ΔH decomp À
Machine learning-enabled chemical space exploration of all-inorganic perovskites for photovoltaics

May 2024

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41 Reads

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12 Citations

npj Computational Materials

The vast compositional and configurational spaces of multi-element metal halide perovskites (MHPs) result in significant challenges when designing MHPs with promising stability and optoelectronic properties. In this paper, we propose a framework for the design of B-site-alloyed ABX 3 MHPs by combining density functional theory (DFT) and machine learning (ML). We performed generalized gradient approximation with Perdew–Burke–Ernzerhof functional for solids (PBEsol) on 3,159 B-site-alloyed perovskite structures using a compositional step of 1/4. Crystal graph convolution neural networks (CGCNNs) were trained on the 3159 DFT datasets to predict the decomposition energy, bandgap, and types of bandgaps. The trained CGCNN models were used to explore the compositional and configurational spaces of 41,400 B-site-alloyed ABX 3 MHPs with a compositional step of 1/16, by accessing all possible configurations for each composition. The electronic band structures of the selected compounds were calculated using the hybrid functional (PBE0). Then, we calculated the optical absorption spectra and spectroscopic limited maximum efficiency of the selected compounds. Based on the DFT/ML-combined screening, 10 promising compounds with optimal bandgaps were selected, and from among these 10 compounds, CsGe 0.3125 Sn 0.6875 I 3 and CsGe 0.0625 Pb 0.3125 Sn 0.625 Br 3 were suggested as photon absorbers for single-junction and tandem solar cells, respectively. The design framework presented herein is a good starting point for the design of mixed MHPs for optoelectronic applications.



Citations (60)


... It can be used to design and optimize plasmonic nanostructures for LSPR sensors [16]. Additionally, AI can assist in analyzing the acquired data to improve accuracy and specificity in biosensing, while also driving the application of complementary metal oxide semiconductor (CMOS) sensors, replacing traditional spectrometers, and enabling the miniaturization and integration of the devices [17][18][19]. In this article, we will discuss the application of AI to LSPR sensors. ...

Reference:

Recent advances in localized surface plasmon resonance (LSPR) sensing technologies
LSPR-susceptible metasurface platform for spectrometer-less and AI-empowered diagnostic biomolecule detection
  • Citing Article
  • August 2024

Analytica Chimica Acta

... ii) Increasing the number of active sites, [67] Optimizing material morphology to expose more catalytic edge sites. iii) Improving conductivity, [68] Integrating electrode materials with highly conductive materials, such as carbon-based compounds, to enhance overall conductivity. iv) Facilitating electron transport, [69] designing efficient electron transport pathways, or optimizing electrode interfaces to promote electron mobility. ...

Electrochemical reduction of nitrate to Ammonia: Recent progress and future directions
  • Citing Article
  • June 2024

Chemical Engineering Journal

... They achieved a Root Mean Square Errors (RMSE) of 220 meV for band gap prediction 36 . Recently, Kim et al. 37 employed a crystal graph convolutional neural network (CGCNN) to investigate the decomposition energies and bandgaps of 41,400 mixed ABX 3 metal halide perovskites with up to four B-site elements. The CGCNN model has an MAE of 37 meV for the bandgap prediction 37 . ...

Machine learning-enabled chemical space exploration of all-inorganic perovskites for photovoltaics

npj Computational Materials

... John-Herpin et al. designed a D2NN that effectively differentiates between various molecular components, as shown in Figure 8a [117]. Large volumes of spectrotemporal data can be collected using the optofluidic method's real-time format, which makes it quicker to construct a D2NN that can reliably distinguish between all significant classes of biomolecules [118], [119]. In Figure 8b, Li et al. demonstrated the potential of metasurface-integrated systems to simplify liquid chemical identification by leveraging unique vortex beam patterns and AI-powered classification, effectively bypassing bulky and complex spectrometric tools [120]. ...

Spectrometer-less refractive index sensor based on the spatial weighted variance of metasurface-generated vortex beams

... 6,[12][13][14] Recent studies suggest that incorporating multiple fragmentomic features can improve the discriminatory power of machine learning models for early cancer detection. 15,16 For example, a proof-of-concept study integrating cfDNA methylation, fragmentation, end sequencing, and nucleosome footprint patterns achieved approximately 95% sensitivity in predicting hepatocellular carcinoma at 95%-98% specificity, outperforming models based on individual features. 17 Combining clinical risk factors, protein biomarker, imaging analysis, and cfDNA fragment size could further enhance predictive capabilities, though it may also increase complexity and costs. ...

Cancer signature ensemble integrating cfDNA methylation, copy number, and fragmentation facilitates multi-cancer early detection

Experimental and Molecular Medicine

... 1,2). Among 95 pathogenic mutations in mtDNA genes, 95% (90/95) of them are point mutations [1][2][3] . In contrast to research on genetic disorders caused by nuclear genes, genetic manipulation of mammalian mtDNA has been difficult, hampering mechanistic studies and the development of therapeutics for mtDNA diseases 4,5 . ...

Base editing of organellar DNA with programmable deaminases
  • Citing Article
  • October 2023

Nature Reviews Molecular Cell Biology

... Traditionally, this evaluation has relied on either simulators or emulators. Simulators, such as DiskSim [12] and FlashStorageSim [13], model the internal operations of storage devices using mathematical models and parameters, providing insights into specific aspects like garbage collection or wear leveling [14], [15], [16], [17]. While valuable for analyzing internal device behavior, simulators often rely on pre-recorded traces and may not accurately capture the dynamic behavior of realworld workloads. ...

Empowering Storage Systems Research with NVMeVirt: A Comprehensive NVMe Device Emulator
  • Citing Article
  • September 2023

ACM Transactions on Storage

... Optic nerve damage followed by insufficient blood supply is known to be more strongly associated with NTG than POAG [8]. Peripapillary vascular parameter showed weaker correlation with visual field parameters in eyes with POAG than in those with NTG [33]. Therefore, vascular parameters may provide clinical information about compromised vasculature and microcirculation in patients with NTG, complementing the visual field and OCT to diagnose glaucoma and assess the risk of progression. ...

A comparison of peripapillary vessel density between subjects with normal-tension glaucoma and primary open-angle glaucoma with similar extents of glaucomatous damage

... In comparison, KV-CSD has been carefully designed to cater specifically to HPC applications, and offers optimized search query services by using secondary attributes as a secondary key, enhancing scientific discovery services in HPC. In addition to KV-CSD, there are also hybrid approaches where secondary indexes are built by host on top of a hash based KVSSD [87,88]. Finally, two recent surveys provide a comprehensive overview of various software-based LSM-Tree key-value store techniques and designs [89,90]. ...

Dotori: A Key-Value SSD Based KV Store
  • Citing Article
  • April 2023

Proceedings of the VLDB Endowment

... Metasurface-based sensors provide enhanced light-capturing capabilities and compact designs, making them ideal for label-free, on-chip integration. Moreover, they have found extensive applications across diverse fields including agriculture [7], industry [8], and biomedicine [9][10][11]. ...

Metasurface-Incorporated Optofluidic Refractive Index Sensing for Identification of Liquid Chemicals through Vision Intelligence
  • Citing Article
  • March 2023

ACS Photonics