Jiayu Zhu’s research while affiliated with United Imaging Healthcare and other places

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Publications (9)


Diff5T: Benchmarking Human Brain Diffusion MRI with an Extensive 5.0 Tesla K-Space and Spatial Dataset
  • Preprint

December 2024

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36 Reads

Shanshan Wang

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Shoujun Yu

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Jian Cheng

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[...]

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Hairong Zheng

Diffusion magnetic resonance imaging (dMRI) provides critical insights into the microstructural and connectional organization of the human brain. However, the availability of high-field, open-access datasets that include raw k-space data for advanced research remains limited. To address this gap, we introduce Diff5T, a first comprehensive 5.0 Tesla diffusion MRI dataset focusing on the human brain. This dataset includes raw k-space data and reconstructed diffusion images, acquired using a variety of imaging protocols. Diff5T is designed to support the development and benchmarking of innovative methods in artifact correction, image reconstruction, image preprocessing, diffusion modelling and tractography. The dataset features a wide range of diffusion parameters, including multiple b-values and gradient directions, allowing extensive research applications in studying human brain microstructure and connectivity. With its emphasis on open accessibility and detailed benchmarks, Diff5T serves as a valuable resource for advancing human brain mapping research using diffusion MRI, fostering reproducibility, and enabling collaboration across the neuroscience and medical imaging communities.



Schematic diagram of ventral intermediate thalamic nucleus (VIM) brain area stimulated by ultrasound. Due to the scattering effect of the skull on ultrasound (red line), the sub images on the right show the uncorrected and corrected focus results, respectively (blue box). The 3-D head model data is derived from CT images of a subject.
Prediction performance according to (a), the mean-square error (MSE) and to (b), the Pearson-correlation (Corr) between observation predictions using the estimated TM, and measurements of the CT modle (square root of the intensity values), as a function of the number of calibration measurements (x-axis is m/N). We repeated 10 times prDeep for three subjects to estimate the row of TM about the target point and calculated MSE and Corr, respectively. The red line represents the average of the experimental data, and the error bars denote the 95% confidence interval (CI) for increasing m/N, where m denotes the number of iterations and N denotes the elements of the transducer array (N=128\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$N = 128$$\end{document}).
Schematic diagram of focusing results using one of the subjects as an example. (A), Transverse section results of acoustic simulation focal zone in different conditions include CT, UTE, and prDeep. (B), Coronal section results in the same way. The colorbar denotes norm sound pressure (0 to 1).
The prDeep algorithm focuses performance in different noise levels (Gaussian noise and average 0.3 times intensity experiment noise). As m/N increases, the recovery sound pressure gradually increases.
The focusing performance at different target points, with A virtually around the ventral intermediate nucleus (VIM), and B virtually around the corpus callosum, was evaluated. The CT and fusion image data used in this figure originate directly from the subject.

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A novel transcranial MR Guided focused ultrasound method based on the ultrashort echo time skull acoustic model and phase retrieval techniques
  • Article
  • Full-text available

May 2024

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69 Reads

Transcranial ultrasound stimulation (TUS) has been clinically applied as a neuromodulation tool. Particularly, the phase array ultrasound can be applied in TUS to non-invasively focus on the cortex or deep brain. However, the vital phase distortion of the ultrasound induced by the skull limits its clinical application. In the current study, we aimed to develop a hybrid method that combines the ultrashort echo time (UTE) magnetic resonance imaging (MRI) sequences with the prDeep technique to achieve focusing ventral intermediate thalamic nucleus (VIM). The time-reversal (TR) approach of the UTE numerical acoustic model of the skull combined with the prDeep algorithm was used to reduce the number of iterations. The skull acoustic model simulation therapy process was establish to valid this method’s prediction and focus performance, and the classical TR method were considered as the gold standard (GS). Our approach could restore 75% of the GS intensity in 25 iteration steps, with a superior the noise immunity. Our findings demonstrate that the phase aberration caused by the skull can be estimated using phase retrieval techniques to achieve a fast and accurate transcranial focus. The method has excellent adaptability and anti-noise capacity for satisfying complex and changeable scenarios.

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Characterizing cerebrospinal fluid mobility using heavily T2-weighted 3D fast spin echo (FSE) imaging with improved multi-directional diffusion-sensitized driven-equilibrium (iMDDSDE) preparation

September 2023

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38 Reads

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8 Citations

Journal of cerebral blood flow and metabolism: official journal of the International Society of Cerebral Blood Flow and Metabolism

Cerebrospinal fluid (CSF) flow patterns and their relationship with arterial pulsation can depict the function of glymphatic system (GS). We propose an improved multi-directional diffusion-sensitized driven-equilibrium (iMDDSDE) prepared heavily T2-weighted 3D FSE (iMDDSDE-HT2) magnetic resonance imaging (MRI) method to noninvasively assess the mobility (MO) of CSF distributed in the ventricles and perivascular spaces (PVS). This method could obtain 3D high resolution (1 mm isotropic) imaging of CSF MO with full brain coverage within five min and distinguish the CSF MO across different pulse phases using a peripheral pulse unit (PPU). The MO curves had the largest amplitude value in the PVS of middle cerebral artery (11.11 × 10 ⁻⁹ m 2/s ) and the largest amplitude growth rate in the posterior cerebral artery (189%). The average coefficient of variations (CVs) in non-pulse trigger and pulse phase 1 and 3 were 0.11, 0.10 and 0.09 respectively. The MO in older healthy participants was lower compared to the young participants, and the MO in cerebral major artery stenosis patients with acute ischemia stroke (AIS) were lower compared to those without AIS in several ventriclar ROIs (P < 0.05). This sequence is a clinically feasible method to effectively evaluate CSF flow patterns in human brain.


SPatiotemporal-ENcoded acoustic radiation force imaging of focused ultrasound

April 2023

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35 Reads

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2 Citations

Neuromodulation technology has provided novel therapeutic approaches for diseases caused by neural circuit dysfunction. Transcranial focused ultrasound (FU) is an emerging neuromodulation approach that combines noninvasiveness with relatively sharp focus, even in deep brain regions. It has numerous advantages such as high precision and good safety in neuromodulation, allowing for modulation of both peripheral and central nervous systems. To ensure accurate treatment targeting in FU neuromodulation, a magnetic resonance acoustic radiation force imaging (MR-ARFI) sequence is crucial for the visualization of the focal point. Currently, the commonly used 2D Spin Echo ARFI (2D SE-ARFI) sequence suffers from the long acquisition time, while the echo planar imaging ARFI (EPI-ARFI) sequence with a shorter acquisition time is vulnerable to the magnetic field inhomogeneities. To address these problems, we proposed a spatiotemporal-encoded acoustic radiation force imaging sequence (i.e., SE-SPEN-ARFI, shortened to SPEN-ARFI) in this study. The displacement at the focal spot obtained was highly consistent with that of the SE-ARFI sequence. Our research shows that SPEN-ARFI allows for rapid image acquisition and has less image distortions even under great field inhomogeneities. Therefore, a SPEN-ARFI sequence is a practical alternative for the treatment planning in ultrasound neuromodulation.



Fig. 5. Inhibiting the projection of VTA-DG GABAergic neurons has an antidepressant effect. Data are expressed as mean ± SEM. *p < 0.05, ***p < 0.0001. (A) Schematic shows chemogenetic inhibition of VTA GABAergic afferents neurons in the DG. (B) Schematic representation of the localization of the bilateral DG injection of CNO. Scale bar, 200 μm. (C) Schematic illustration of the VTA. (D) Representative photomicrographs show viral of GAD67-Cre and hM4Di expressed in the VTA. Scale bar, 200 μm.
Fig. 6. Chemogenetic inhibition of CA1 projection to NAc affected the therapeutic effect of DBS-on depression. Data are expressed as mean ± SEM. *p < 0.05, **p < 0.01, ***p < 0.001. (A) Schematic illustration of Retro-hSyn-tdTomato-P2A-iCre-WPRE-pA injection in NAc and pAAV-EF1A-DIO-hM4Di-eGFP-WPRE injection in CA1 to inhibit the projection of CA1 to NAc. (B) The stimulation electrode was implanted at the right AcbC of the mouse (red arrow). Scale bar, 200 μm. (C) Schematic illustration of the CA1. (D) Representative photomicrographs showing viral of retro-iCre expression in the NAc (left, scale bar, 300 μm), retro-iCre and hM4Di expression in the CA1(right; top, scale bar, 150 μm; bottom, scale bar, 200 μm).
The antidepressant effect of nucleus accumbens deep brain stimulation is mediated by parvalbumin-positive interneurons in the dorsal dentate gyrus

September 2022

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41 Reads

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7 Citations

Neurobiology of Stress

The nucleus accumbens (NAc) is a crucial region in the reward circuit and is related to anhedonia, the pivotal symptom of major depression disorder (MDD). Deep brain stimulation (DBS) of NAc has been identified as an effective treatment for severe refractory major depression; however, the underlying mechanism of NAc-DBS in MDD treatment remains elusive. Using the chronic unpredictable mild stress (CUMS) mouse model, we found NAc-DBS rescued depression-like behaviors, and reversed high gamma oscillation reduction and neurogenesis impairment in the dorsal dentate gyrus. Inactivation of parvalbumin (PV)-positive interneurons (PVI) in the dorsal DG led to depression-like behavior and decreased adult neurogenesis. Further investigation elucidated the VTA-DG GABAergic projection and CA1-NAc projection might jointly participate in NAc-DBS therapeutic mechanism. Disinhibition of the VTA-DG GABAergic projection had an antidepressant effect, and inhibition of the CA1-NAc projection reduced the antidepressant effect of DBS-NAc. Moreover, disinhibiting the VTA-DG GABAergic projection or activating the CA1-NAc projection could increase PV interneuron activity in the dorsal DG. These results showed PV interneurons in the dorsal DG as an essential target in depression and NAc-DBS antidepressant mechanisms.


Citations (4)


... The existence of the BBB is a key reason why substantial therapeutic breakthroughs have not been achieved for treatments involving patients with NSCLC BMs. Another important factor may be the molecular characteristics of brain metastatic tumor cells differing from those of the primary tumor and/or extracranial metastases, which can result in unpredictable volatility in the response of intracranial metastases to targeted drugs (66)(67)(68). Studies have shown that the positive expression rates of EGFR and HER3 in primary NSCLC tumors are approximately 52.3% and 82.7%, respectively, while in BMs, these rates are 62.7% and 91.2%, respectively, suggesting that the expression rates of EGFR and HER3 in BMs might be higher than those in the primary tumor (69). ...

Reference:

The current landscape and prospects of antibody-drug conjugates for lung cancer brain metastases: a narrative review
Disturbed meningeal lymphatic function associated with malignancy and progression in patients with intracranial malignant tumors
  • Citing Article
  • November 2023

Med

... system and paravascular spaces. [32][33][34][35][36][37] Our observed differences in FA(D*) and MD(D*) among the lateral, third, and fourth ventricles align with findings from previous studies measuring the CSF pseudo-diffusivity in the brain's ventricular system. 25,32,33 Previous studies found a low MD(D*) in the lateral ventricles about 3 × 10 −3 mm 2 /s (our study: 8 × 10 −3 mm 2 /s) and a high MD(D*) in the third and fourth ventricles about 8-13 × 10 −3 mm 2 /s (our study: 10 and 29 × 10 −3 mm 2 /s for fourth and third ventricle, respectively). ...

Characterizing cerebrospinal fluid mobility using heavily T2-weighted 3D fast spin echo (FSE) imaging with improved multi-directional diffusion-sensitized driven-equilibrium (iMDDSDE) preparation
  • Citing Article
  • September 2023

Journal of cerebral blood flow and metabolism: official journal of the International Society of Cerebral Blood Flow and Metabolism

... In a novel approach, Qi et al proposed a spatiotemporal-encoded (SPEN) sequence to image faster than SE approaches and with less sensitivity to field inhomogeneities than EPI. 93 In SPEN, the 90 excitation pulse is replaced by a linear chirp pulse and a spatiotemporal encoding gradient is utilized, resulting in quadratic phase profile. By only using parts where the phase is stable, the effect of distortions from B 0 inhomogeneities is reduced. ...

SPatiotemporal-ENcoded acoustic radiation force imaging of focused ultrasound

... The impact of chronic DBS on adult neurogenesis has not been investigated in detail so far: Khaindrava et al. (2011) report unaltered SVZ-and DG-aNSC proliferation after eight days of STN-DBS, but increased survival of newborn neuroblasts and neurons in the 6-OHDA rat model. Other studies in healthy animals or in different psychiatric disease models, e.g., for depression and dementia, mostly report an increase in adultgenerated hippocampal neurons, independent of the stimulation site (e.g., entorhinal cortex, anteromedial thalamus) or DBS duration (Toda et al., 2008;Stone et al., 2011;Chamaa et al., 2021;Zhou et al., 2022). The only study on aNSC proliferation in PD patients demonstrated an increase in SVZ precursor cell proliferation in DBS-treated patients compared to both unstimulated PD subjects and healthy controls, though without data on hippocampal neurogenesis (Vedam-Mai et al., 2014). ...

The antidepressant effect of nucleus accumbens deep brain stimulation is mediated by parvalbumin-positive interneurons in the dorsal dentate gyrus

Neurobiology of Stress