Jeffrey C. Kwong’s research while affiliated with University of Toronto and other places

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Publications (353)


Social inequalities in COVID-19 death by area-level income in 11.2 million people in Ontario, Canada: patterns over time and the mediating role of vaccination
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March 2025

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8 Reads

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1 Citation

American Journal of Epidemiology

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Sarah Swayze

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Knowledge of patterns in COVID-19 deaths by area-level income over time and the mediating role of vaccination in inequality patterns remains limited. We used data from a population-based retrospective cohort of 11,248,572 adults in Ontario, Canada. Cause-specific hazard models were used examine the relationship between income 2016 Census at the dissemination area level) and COVID-19 deaths between March-1-2020 and January-30-2022, stratified by wave. We used regression-based causal mediation analyses to examine the mediating role of vaccination in the relationship between income and COVID-19 deaths during waves4 & 5. After accounting for demographics, baseline health, and other social determinants of health, inequalities in COVID-19 deaths by income persisted over time (hazard ratios[95% confidence intervals] comparing lowest-income vs. highest-income quintiles were 1.37[0.98-1.92] for wave-1, 1.21[0.99-1.48] for wave-2, 1.55[1.22-1.96] for wave-3, and 1.57[1.15-2.15] for waves4 & 5). By the start of wave four, 7,534,259(67.7%) of those alive were vaccinated, with lower odds of vaccination in the lowest-income vs. highest-income quintiles (0.71[0.70-0.71]). This inequality in vaccination accounted for 56.9%[22.5%-91.3%] of inequalities in COVID-19 deaths between individuals in the lowest-income vs. highest-income quintiles. Efforts are needed to address vaccination gaps and residual heightened risks associated with lower income to improve health equity in COVID-19 outcomes.


Health Utilities in People with Hepatitis C Virus Infection: A Study Using Real-World Population-Level Data

February 2025

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11 Reads

Medical Decision Making

Background Hepatitis C virus (HCV) infection is associated with reduced quality of life and health utility. It is unclear whether this is primarily due to HCV infection itself or commonly co-occurring patient characteristics such as low income and mental health issues. This study aims to estimate and separate the effects of HCV infection on health utility from the effects of clinical and sociodemographic factors using real-world population-level data. Methods We conducted a cross-sectional retrospective cohort study to estimate health utilities in people with and without HCV infection in Ontario, Canada, from 2000 to 2014 using linked survey data from the Canadian Community Health Survey and health administrative data. Utilities were derived from the Health Utilities Index Mark 3 instrument. We used propensity score matching and multivariable linear regression to examine the impact of HCV infection on utility scores while adjusting for clinical and sociodemographic factors. Results There were 7,102 individuals with hepatitis C status and health utility data available (506 HCV-positive, 6,596 HCV-negative). Factors associated with marginalization were more prevalent in the HCV-positive cohort (e.g., household income <$20,000: 36% versus 15%). Propensity score matching resulted in 454 matched pairs of HCV-positive and HCV-negative individuals. HCV-positive individuals had substantially lower unadjusted utilities than HCV-negative individuals did (mean ± standard error: 0.662 ± 0.016 versus 0.734 ± 0.015). The regression model showed that HCV positivity (coefficient: −0.066), age, comorbidity, mental health history, and household income had large impacts on health utility. Conclusions HCV infection is associated with low health utility even after controlling for clinical and sociodemographic variables. Individuals with HCV infection may benefit from additional social services and supports alongside antiviral therapy to improve their quality of life. Highlights Hepatitis C virus (HCV) infection is associated with reduced quality of life and health utility. There is debate in the literature on whether this is primarily due to HCV infection itself or commonly co-occurring patient characteristics such as low income and mental health issues. We showed that individuals with HCV infection have substantially lower health utilities than uninfected individuals do even after controlling for clinical and sociodemographic variables, based on a large, real-world population-level dataset. Socioeconomically marginalized individuals with HCV infection had particularly low health utilities. In addition to improving access to HCV testing and treatment, it may be beneficial to provide social services such as mental health and financial supports to improve the quality of life and health utility of people living with HCV.



Quantitative observational evidence of indirect herd benefits from COVID-19 vaccination or prior infection on SARS-CoV-2 infections and COVID-19 deaths: a population-based retrospective cohort study in Ontario, Canada
  • Preprint
  • File available

January 2025

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14 Reads

Background: Empirical evidence on the indirect herd benefits of COVID-19 vaccination and/or prior infection is limited. We aimed to examine how area-level immunity interacts with individual-level immunity to affect COVID-19 diagnoses and deaths. Methods: Ontario residents aged 18 years or older were followed from August-01-2021 to January-30-2022. Individual-level immunity was defined as received a primary series of COVID-19 vaccines or a positive SARS-CoV-2 test in the past 165 days. Area-level immunity was determined based on the proportion of immune individuals in an individuals residing area. We used logistic regression and cause-specific hazard models to examine the relationship between immunity and COVID-19 diagnosis, and between immunity and COVID-19 death, respectively. We included an interaction term between individual-level and area-level immunity in each model. Results: Of 11,122,816 adults, 7,518,015 (67.6%) were immune at baseline. After accounting for individual-level demographics, baseline health, and area-level social determinants of health, area-level immunity (highest vs. lowest quintiles) was associated with lower odds of COVID-19 diagnosis; the association was larger among non-immune (odds ratios [95% confidence interval]: 0.72 [0.70, 0.75]) than immune individuals (0.93 [0.90, 0.96]). Higher area-level immunity (highest vs. lowest quintiles) was also associated with lower hazard of COVID-19 death among non-immune individuals (hazard ratio: 0.77 [0.60, 1.00]). Conclusions: Our study provides observational evidence supporting the herd benefits of vaccination or prior infection on SARS-CoV-2 infections and COVID-19 deaths. Findings reinforce the need for high vaccination coverage to protect vaccinated and unvaccinated populations, while providing insights for interpreting vaccine effectiveness estimates in the context of herd immunity.

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P-2073. COVID-19 Vaccine Effectiveness in Patients with Lung Cancer and Mesothelioma in the Omicron Era

January 2025

Open Forum Infectious Diseases

Background Since the Omicron variant emerged, uptake of booster doses of COVID-19 vaccines has gradually decreased both in the general population and among individuals at increased risk of severe COVID-19, such as patients with lung cancer. COVID-19 vaccine effectiveness (VE) has not been estimated in patients with lung cancer in the Omicron era. Methods In this test-negative design study using linked population-based cancer registry, health administrative, vaccination, and public health surveillance databases, we included all patients with active lung cancer or mesothelioma living in Ontario, Canada, who were tested for SARS-CoV-2 by RT-PCR from January 2, 2022, to August 31, 2023. We estimated VE against COVID-19-related severe outcomes (hospitalization or death) 7-179 days and ≥180 days following vaccination. Results During the study period, 13,622 patients with active lung cancer or mesothelioma underwent SARS-CoV-2 testing, with 1,371 (10.1%) positive. After exclusions, we analyzed 6,037 testing episodes, including 1,354 test-positive and 4,683 randomly selected test-negative episodes. Overall, COVID-19-associated hospitalization and mortality rates were 7.3% and 4.0%, respectively. Across both groups, 126/439 hospitalized patients (28.7%) and 116/5,598 non-hospitalized patients died (2.1%) (p=0.001). After multivariable adjustment, VE against severe COVID-19 was 56% (95%CI, 29%, 72%) 7-179 after vaccination and 10% (-45%, 44%) ≥180 days after vaccination. Conclusion Overall, COVID-19 VE against severe outcomes appears to be considerably lower for patients with active lung cancer or mesothelioma than the general population and decreases substantially beyond 180 days after vaccination. Our finding supports administration of COVID-19 booster doses in patients with lung cancer and mesothelioma every 6 months. Disclosures All Authors: No reported disclosures


636. Pneumocystis Pneumonia Outcomes in Solid Organ Transplant Recipients and Patients Living with HIV: A Population-Based Study Over 20 Years (2002-2022) in Ontario, Canada

January 2025

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1 Read

Open Forum Infectious Diseases

Background While it is well established that HIV-positive and non-HIV immunocompromised patients are susceptible to Pneumocystis pneumonia (PCP), comparing PCP outcomes between patients with different underlying immunocompromising conditions is critically important to optimize chemoprophylaxis strategies. Methods In this population-based cohort, we determined contributing factors to 90-day all-cause mortality following PCP diagnosis among patients living with HIV (PLWH) and solid organ transplant recipients (SOTRs) hospitalized in Ontario, Canada between Apr/1/2002 and Dec/31/2022. We linked data from provincial health administrative databases using unique encoded identifiers and included all adult patients hospitalized with PCP based on diagnostic codes from hospital discharge abstracts. We used logistic regression models to estimate unadjusted and adjusted odds ratios (uOR and aOR) and 95% confidence intervals (95%CI) for the associations between underlying immunocompromising conditions and PCP outcomes. Results A total of 879 patients were hospitalized with PCP, including 121 SOTRs (13.7%) and 758 PLWH (86.2%). 90-day mortality rates were 19.8% in SOTRs and 13.2% in PLWH. In the unadjusted model, 90-day mortality was not significantly associated with organ transplantation (OR=1.58; 95%CI, 0.96-2.62) or HIV infection (OR=0.62; 95%CI, 0.38-1.03). Comparing HIV patients to liver SOTRs, liver SOTRs experienced higher mortality (uOR=8.54, 95%CI=3.11-23.46). In the adjusted model, liver transplantation was associated with an increased risk of 90-day mortality (aOR=4.36; 95%CI, 1.40-13.59). Among SOTRs, in the unadjusted analysis, liver transplant recipients had an increased risk of 90-day mortality (uOR=9.18; 95%CI, 3.00-28.09). Conclusion Among SOTRs, liver transplant recipients are at particularly higher risk of mortality following PCP diagnosis. Our findings may prompt a re-evaluation of current PCP prophylactic strategies in liver transplant patients. Disclosures All Authors: No reported disclosures


Safety and health care utilization following COVID-19 vaccination (BNT162b2) among children and youth with juvenile idiopathic arthritis and inflammatory bowel disease: A population-based study

January 2025

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10 Reads

Paediatrics & Child Health

Objectives To evaluate among Ontario children and youth (<16 years old) with juvenile idiopathic arthritis (JIA) or inflammatory bowel disease (IBD), whether COVID-19 vaccines (Monovalent BNT162b2) were associated with adverse events of special interest (AESI) or health care utilization. Methods Using health administrative databases, all children/youth with JIA or IBD who received at least one vaccine were identified from November 2020 to December 2021 with follow-up until August 31, 2022. Self-controlled case series analyses were used to determine the relative incidence rates (RIR) of events in any 3-week period [AESI, Emergency Department (ED) visits, hospitalizations] and in any 1-month period [specialist visits] post-vaccine compared to control periods. Results We studied 1629 JIA and 1050 IBD patients. In the JIA cohort, the median age at vaccination was 12.0 years [Interquartile range (IQR): 10.0 to 14.0], and the median disease duration was 4.3 years (IQR: 2.0 to 7.5). By December 2021, 67.1% (n = 1093) received two doses and 24.1% (n = 393) received three doses. In the IBD cohort, the median age at vaccination was 13.0 (IQR: 11.0 to 14.0) with a median disease duration of 2.4 years (IQR: 1.1 to 4.8). Fifty-four percent (n = 565) received two doses and 36.3% (n = 381) received three doses. During risk periods, AESI was rarely reported. Relative to control periods, JIA and IBD patients demonstrated similar rates of hospitalizations [JIA: RIR: 0.76 (95% confidence interval [CI]: 0.25 to 2.33), IBD: RIR: 0.64 (95% CI: 0.29 to 1.41)], ED visits [JIA: RIR: 1.11 (95% CI: 0.77 to 1.59), IBD: RIR: 0.93 (95% CI: 0.61 to 1.43)], and specialist visits [JIA: RIR: 1.06 (95% CI: 0.89 to 1.26), IBD: RIR: 0.56 (95% CI: 0.22 to 1.43)]. Conclusions Overall, this study demonstrates the safety of the BNT162b2 vaccine in children/youths with JIA and IBD, with no associated increase in AESI or health care use.


Characteristics of individuals who received a complete, 2-dose mpox vaccine regimen as part of the public health response to the mpox epidemic in Ontario, Canada: A CIRN study

January 2025

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20 Reads

Background: In May 2022, an outbreak of mpox emerged in Canada. In June 2022, the province of Ontario began offering first doses of a 2 dose regimen of Modified Vaccinia Ankara Bavaria Nordic (MVA BN) to those at high risk of exposure. Second doses became available in September 2022. To help increase dose 2 access and uptake, we sought to understand how individuals who received 2 doses differed from those who received only 1 dose. Methods: We linked provincial health administrative data of individuals who received >=1 dose of MVA-BN between June 6, 2022 and October 31, 2023 in Ontario. We used age-adjusted Poisson regression to examine the association between demographic, social, and economic characteristics; co-morbidities; and proxies for sexual exposure (e.g., bacterial sexually transmitted infection [STI] diagnoses) and proxies for healthcare engagement (e.g., syphilis testing, past receipt of other vaccines) with MVA BN dose 2 receipt. Results: Among 33,012 individuals with >=1 MVA BN dose, 38.2% (12,620) received 2 doses. Receipt of dose 2 versus only dose 1 was associated with region (e.g., Ottawa versus Toronto [prevalence ratio, PR=1.08, 95% confidence interval, CI 1.06-1.09]); syphilis testing (>=4 tests PR=1.12, 95%CI 1.11-1.14) or receiving a COVID-19, influenza, or other vaccine (PR=1.12, 95%CI 1.11-1.14) in the year before dose 1; and syphilis testing (>=4 tests PR=1.19, 95%CI 1.18-1.20) or bacterial STI diagnoses >3 months after dose 1 (>=4 diagnoses PR=1.07, 95% CI 1.05-1.08). Refugees were less likely to get dose 2 versus Canadian-born individuals or long term immigrants (PR=0.93, 95%CI 0.91-0.95). Conclusions: Our findings suggest lower healthcare access and/or engagement may play a role in limiting dose 2 receipt in Ontario. Public messaging around availability and eligibility of second doses, tailored strategies for eligible refugees, increased access outside healthcare venues, and adopting promotion strategies from regions with high uptake, may help increase dose 2 coverage.


Author Correction: Effectiveness of mRNA COVID-19 vaccine booster doses against Omicron severe outcomes

December 2024

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8 Reads


Citations (54)


... Vaccines can provide direct protection against infection and against morbidity and mortality (1,2). ...

Reference:

Quantitative observational evidence of indirect herd benefits from COVID-19 vaccination or prior infection on SARS-CoV-2 infections and COVID-19 deaths: a population-based retrospective cohort study in Ontario, Canada
Measures of how well a vaccine works
  • Citing Article
  • September 2024

The BMJ

... Third, we reduced the proportion of contacts traced from 20% to 15% and 10% to reflect potential non-disclosure of sexual contacts. Fourth, we examined the sensitivity of our results to vaccine effectiveness by using the minimum and maximum of estimates from literature (35.8% and 86.0%, respectively), or by excluding an outlier study with low vaccine effectiveness estimates (71.9%) [24][25][26][27][28][29][30]. Finally, to directly compare the impact of vaccination in all three cities, we examined a scenario where vaccination was initiated the same number of days after detection of the first local cases and reached the same daily coverage, using Vancouver as the reference since it had an earlier start of vaccination and achieved the highest vaccine coverage. ...

Effectiveness of modified vaccinia Ankara-Bavarian Nordic vaccine against mpox infection: emulation of a target trial

The BMJ

... A series of empirical studies follows. These studies reflect some of the most pressing issues facing our public health and healthcare systems today, including the opioid crisis (Carnide et al., 2024), mental health and well-being (Gillespie et al., 2024;Kader et al., 2024), unemployment and poverty (Essien et al., 2024;Jiménez & Dutton, 2024), and, of course, ongoing concerns related to the COVID-19 pandemic (Aglipay et al., 2024;Manoharan et al., 2024). Carnide et al. (2024) seek to understand the risk of opioid-related harms associated with work-related injuries. ...

Seroprevalence of SARS-CoV-2 antibodies among children receiving primary care in Toronto, Ontario
  • Citing Article
  • August 2024

Canadian journal of public health. Revue canadienne de santé publique

... RSV-based neonatal pneumonia has emerged as one of the serious diseases, posing different challenges in the treatment and management of critically and noncritically ill children. [18] In this study, the clinical data of children with neonatal pneumonia were retrospectively analyzed, revealing significant differences between critically and noncritically ill children in terms of clinical features, laboratory indices, life-saving measures, and antibiotic usage. These differences underscored their recognition and coping strategies in clinical care. ...

Pediatric Respiratory Syncytial Virus Hospitalizations, 2017-2023
  • Citing Article
  • June 2024

JAMA Network Open

... Several specific antiviral drugs including Paxlovid (nirmatrelvir/ritonavir), Lagevrio (molnupiravir), Veklury (remdesivir) and Azvudine, which targeted the main protease or the RNAdependent RNA polymerase (RdRp), have been approved by the FDA, EMA, or NMPA [4][5][6]. However, the continuous emergence of SARS-CoV-2 variants not only causes immune escape, rendering vaccines and antibodies ineffective, but also leads to severe illness, especially in elderly or comorbid patients [7,8]. And it can also cause resistance to small molecule antiviral drugs [9]. ...

Retrospective population-based analysis of the clinical severity of Covid-19 Variants of Concern (Preprint)

JMIR Public Health and Surveillance

... Findings in Israel (epi-IIRN) stratified IBD patients according to immunomodulator, and found no difference in infection from vaccinated healthy controls, even in patients on anti-TNF [113]. Post-vaccination all-cause hospitalization was also reported to be reduced in one study [114]. In the PREVENT-COVID study cohort, comprising a majority of IBD patients on anti-TNF therapy, hospitalizations were rare even in those who experienced vaccine breakthrough infections [115]. ...

COVID-19 vaccination safety and associated health care utilization among adults with inflammatory bowel disease – a population-based self-controlled case series analysis

BMC Gastroenterology

... It has to be noted that the increase in antibiotic use during the late pandemic-period coincided with the mass COVID-19 vaccination program in the EU/EEA. Since COVID-19 vaccination is shown to be associated with reduced antibiotic prescribing in older outpatients, future decreases in the vaccination rate in this age group could result in an even further increase in antibiotic use [17,18]. ...

The Effect of COVID-19 Vaccination on Outpatient Antibiotic Prescribing in Older Adults: A Self-Controlled Risk-Interval Study
  • Citing Article
  • May 2024

Clinical Infectious Diseases

... The country of origin was grouped into regions according to the World Bank classification [14,15]. PWID (past or present) status [16], human immunodeficiency virus (HIV) co-infection [17], decompensated cirrhosis (DC), and hepatocellular carcinoma (HCC) [3] were identified using published algorithms based on the international classification of diseases (ICD) 9/10 codes and the presence of disease-specific medications (Tables S1 and S2) [16,[18][19][20][21][22]. Data on HCV-specific antiviral dispensations were obtained from the RAMQ-Pharm database (Table S3) [23][24][25]. ...

Validation of case-ascertainment algorithms using health administrative data to identify people who inject drugs in Ontario, Canada
  • Citing Article
  • March 2024

Journal of Clinical Epidemiology

... Despite the progress made, there is still evidence of variation in performance across the country in terms of recording all the deaths and the quality of completion and investigation of DCs 26 . Although it is recognized that, since 2005, the Ministry of Health has initiated a process to improve the system coverage by reducing the number of deaths with undetermined causes, based on the development of new computerized tools and training and/or qualification courses for new coders, there are still challenges in terms of the quality of the records 27 . ...

Hepatitis C Attributable Healthcare Costs and Mortality among Immigrants: A Population-Based Matched Cohort Study

... ; https://doi.org/10.1101/2025.02.07.25321814 doi: medRxiv preprint Our findings regarding the estimated vaccine effectiveness among prior infected participants were consistent with those reported in other studies. 23,24 On the other hand, our study's design did not capture unreported home infections of mild severity. Such cases, if undetected, can lead to an overestimation of vaccine effectiveness. ...

Protection of prior SARS-CoV-2 infection, COVID-19 boosters, and hybrid immunity against Omicron severe illness: A population-based cohort study of five million residents in Canada