Jan Esefeld’s research while affiliated with Friedrich Schiller University Jena and other places

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Publications (22)


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Subareas of the reference area covered during ground surveys.

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Survey of a snow petrel nesting site in a remote high mountain region to inform designation of an Antarctic Specially Protected Area
  • Article
  • Full-text available

April 2024

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47 Reads

Frontiers in Conservation Science

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Jan Esefeld

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Despite the sensitivity of ecosystems in extreme conditions, only 0.029% of the Antarctic continent is currently granted special protection as Antarctic Specially Protected Area (ASPA). Additionally, protected areas are unevenly distributed and unrepresentative of the biodiversity of Antarctica. The Antarctic Treaty Consultative Parties are thus striving to establish a more coherent network of protected areas. In this context, the Otto-von-Gruber-Gebirge was identified as an area highly worthy of protection due to its unique ecosystem including one of the largest snow petrel breeding sites, and relative pristine nature. However, in the process of designation, an update of knowledge, particularly of the population status of snow petrel in the area, was recognized to be needed. This study was aimed at estimating a population census of snow petrel breeding pairs in the Lake Untersee catchment, an important subarea of the potentially protected area. Investigations were severely limited by the remoteness and harsh conditions of the area, enabling only a short fieldwork period with limited resources. Thus, a combination of remote sensing and traditional methods was applied. We conducted a ground survey of a smaller reference area, including locating nest sites and assessing nest site characteristics. Snow petrels usually nest in the cavities of large boulders and we thus classified habitat suitability based on boulder presence. To do so, the study area was remotely surveyed by unpiloted aerial vehicles to gain orthophotomosaics in sufficient resolution to distinguish on-ground conditions for breeding. We then calculated nest site densities for the reference area. We also studied nest site data such as nest cavity depth, orientation, and attendance to gain basic knowledge of the characteristics of the breeding site. Finally, we measured a sample of four live snow petrels to determine which morph was present at the site. We were able to obtain nest site data and to extrapolate it, which produced population numbers of 11,765 breeding pairs for the whole study area. This underpins the size of the breeding site and thereby its importance for the species.

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Fig. 1 Distribution of cape petrel (Daption capense) breeding sites on the Fildes Peninsula and Ardley Island in the southwest of King George Island, South Shetland Islands, Antarctica. The size of the filled circles indicate the maximum number of breeding pairs from
Fig. 2 Number of breeding pairs of cape petrel (Daption capense) on the Fildes Peninsula and Ardley Island in the southwest of King George Island, South Shetland Islands, Antarctica. Year refers to time of chick fledging. Incomplete data are marked by asterisk. Data sources are listed in Table 1
Distribution of cape petrel (Daption capense) breeding sites on the Fildes Peninsula and Ardley Island in the southwest of King George Island, South Shetland Islands, Antarctica. The size of the filled circles indicate the maximum number of breeding pairs from 2004 to 2020. Regional breeding clusters are represented by ovals. Clusters affected by human activity are marked by asterisks. Dashed ovals indicate colonies of which only population estimates are available
Population decline of the cape petrel (Daption capense) on King George Island, South Shetland Islands, Antarctica

September 2021

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254 Reads

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10 Citations

Polar Biology

The Antarctic and the surrounding Southern Ocean are currently subject to rapid environmental changes and increasing anthropogenic impacts. Seabird populations often reflect those changes and so act as indicators of environmental variability. Their population trends may provide information on a variety of environmental parameters on the scale of years or decades. We therefore provide long-term data on the cape petrel ( Daption capense ) population from a long-term monitoring program on Fildes Peninsula, South Shetland Islands, Maritime Antarctic, an area of considerable human activity. Our data, covering a period of 36 years, indicate some variability, but no clear trend in the number of breeding pairs between the breeding seasons 1985 and 2006. However, beginning in the 2008 season, the population decreased significantly and reached a minimum in the 2020 season. The mean annual decrease between 2008 and 2020 was 10.6%. We discuss possible causes of this strong negative population trend. Anthropogenic disturbance only affects a few breeding sites in the area and is therefore unable, on its own, to explain the consistent population decline at all the breeding sites studied. We think it more likely that reduced food availability was the main cause of the drastic decline in the cape petrel population.


Effects of UAV overflight height, UAV type, and season on the behaviour of Emperor penguin adults and chicks

June 2021

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92 Reads

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6 Citations

Remote Sensing Applications Society and Environment

The use of unmanned aerial vehicles (UAVs) increased during the last decade worldwide and in the pristine wilderness of the Antarctic continent. They are used by scientists from diverse fields, television and film crews, tourists, and station personnel. To protect Antarctic wildlife from potential disturbance, policy makers and national authorities require scientific information on the vulnerability of such species. Our study provides knowledge on the behavioural reaction to UAV overflights of emperor penguins (Aptenodytes forsteri) during crèche and fledge phase. We investigated three main questions: what is the influence of flight height, do two different UAV models (a quadcopter and a fixed-wing UAV) have different effects, and what is the influence of different times during the season. For adult penguins we found no differences between flight heights of 70 m or higher and control situations when flying with the quadcopter. Such a flight height without significant change in reactions in comparison to control couldn’t be found for neither chicks (with both UAV models tested) nor adults during fixed-wing flights. In general, the behavioural reaction to the quadcopter was higher than to the fixed-wing UAV regarding proportions of individuals. The comparison of two times revealed a stronger reaction on the later time (end of December) than on the earlier (mid of November). In general, the reaction was not very intense with only small proportions of individuals changing their behaviour.


Emperor penguin reactions to UAVs: First observations and comparisons with effects of human approach

May 2021

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80 Reads

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7 Citations

Remote Sensing Applications Society and Environment

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Jan Esefeld

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Manuel Tim Hallabrin

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The use of UAVs has greatly increased in recent years, worldwide and in the Antarctic. Their use has recently increased even in very remote and pristine regions of the Antarctic. There is, however, very little information on the sensitivity of Antarctic species to such disturbance. In particular, there is nothing on the emperor penguin (Aptenodytes forsteri), a flagship species of the region. We therefore, during November 2019, tested the responses of emperor penguins at the Atka Bay colony (Queen Maud Land). We video recorded the behaviour of adults and chicks during multirotor UAV activity and human approach. There were, in general, only moderate responses with distinct reactions in fewer than 20% of individuals observed. Chicks increased vigilance behaviour during UAV activity but both adults and chicks did so during human approach. We saw the greatest reaction in chicks during vertical UAV approach. Adults showed intermediate reactions to vertical UAV approach but only very few reactions to horizontal flights.



Penguin megrivirus, a novel picornavirus from an Adélie penguin (Pygoscelis adeliae)

November 2019

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56 Reads

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8 Citations

Archives of Virology

The complete genome sequence of a novel megrivirus of the family Picornaviridae was determined from nucleic acid extracted from a pool of six faecal specimens of Adélie penguins. The samples were collected near Bellingshausen Station, King George Island of the South Shetland Islands, Antarctica. Penguin megrivirus is the first megrivirus with a predicted L protein. It has an L-3-5-4 genome layout, a type IV IRES, and a long 3’ untranslated region of 668 nt.


DETECTING ANTARCTIC SEALS AND FLYING SEABIRDS BY UAV

May 2019

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493 Reads

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18 Citations

ISPRS Annals of the Photogrammetry Remote Sensing and Spatial Information Sciences

In recent years Unmanned Aerial Vehicles (UAVs) became a fast-developing technology with manifold fields of application. In the field of wildlife biology, it offers the opportunity to quantify populations, to map the spatial distribution of species and to observe the behavior of animals with no or low disturbance. Moreover, UAV based mapping allows to obtain data from sites which are hardly or not accessible and to cover much larger areas than by traditional ground based methods. The advantages of UAV based mapping are of particular relevance under the harsh conditions of Antarctic fieldwork. Whether certain species qualify for UAV based monitoring depends on their detectability from the distance and the distinctiveness of their characteristics in comparison to other species, which has not been studied for Antarctic species in detail so far. This study aims to evaluate how and under which conditions, particularly flight height, Antarctic flying seabird and seal species are detectable in aerial imagery. A trial was conducted comparing the detection rate of different observers for several Antarctic species in aerial images of different ground sample distances. Descriptions of individual appearance as well as body size dimensions are delivered for all species. For most of the investigated species, monitoring proves to be possible from practical flight heights, while others are still very hard to detect even in low altitudes. A concluding table is given aiming to provide a guide for future surveys on which flight altitudes to chose and how to identify focal study objects.


Location of the study area and observed breeding groups within the colony on Ardley Island. Marked are the observed breeding groups of Adélie penguins (A1, A2, Pygoscelis adeliae) and the observed breeding groups of Gentoo penguins (G1, G2, Pygoscelis papua). Breeding groups A1 and G2 are located on the beach terrace. Breeding groups A2 and G1 are located on a plateau on a higher ground level
Flight schemes applied in the experiments. Top: horizontal (left) and vertical (right) flight modes, bottom: take-off experiments. All altitudes are given as meters above ground level of the focal group
General overview over the frequency of behavioural classes (see Table 2) in different flight phases for Gentoo and Adélie penguins (Pygoscelis papua/P. adeliae). For Gentoo penguins, the vigilance group was divided into high and low vigilance. Horizontal and vertical data are pooled
Sensitivity of Adélie and Gentoo penguins to various flight activities of a micro UAV

December 2018

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670 Reads

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53 Citations

Polar Biology

A recent increase in the use of unmanned aerial vehicles (UAVs)—also known as remotely piloted aircraft (RPA)—in the Antarctic in private, commercial and scientific sectors suggests that operational guidelines are urgently needed. One of the factors inhibiting adoption of such guidelines is the lack of knowledge about the impact of UAVs on wildlife. During the austral summer field season of 2014/15, data were gathered on the behavioural reactions to UAVs of Gentoo (Pygoscelis papua) and Adélie penguins (Pygoscelis adeliae), both resident breeding species on Ardley Island, King George Island, South Shetland Islands. A series of overflights at different altitudes above the nesting penguins were conducted with a small octocopter UAV, and their behaviour was recorded by video. Penguin behaviour altered as a result of the UAV flights, and behavioural reactions were more pronounced when the UAV was flown at lower altitudes. In Adélie penguins, behavioural reactions caused by the UAV were evident at the highest tested altitude of 50 m, while in Gentoo penguins reactions were evident from 30 m downwards. For both species, the reactions increased markedly when the UAV was flown at low altitudes of 10–20 m. Gentoo penguins showed significant reactions when the UAV was launched at distances closer than 20 m. There was some evidence of habituation to the UAV at some altitudes for horizontal flights, but no evidence of habituation in vertical flights.


Spread of Antarctic vegetation by the kelp gull: comparison of two maritime Antarctic regions

June 2018

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481 Reads

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36 Citations

Polar Biology

In the present paper, we compare how the kelp gull, Larus dominicanus, utilizes various nest building materials, particularly vascular plants, bryophytes, lichens and other components, in the Fildes Peninsula area (King George Island) and on the Argentine Islands area. In both areas, nest material primarily consisted of the Antarctic hairgrass (Deschampsia antarctica), bryophytes, lichens, feathers, limpets, and algae. Our study reveals area-specific differences in the utilization of plants for nest building related to local conditions during the nesting season. In the Fildes area, vegetation emerges from under the winter snow cover earlier in the spring, giving the gulls greater choice locally, meaning that the gulls need not resort to long distance material transfer. Here, mosses and lichens dominate in the nest material, likely collected from the nearby vegetation formations. The Antarctic hairgrass in these conditions is mostly found in nests located directly within hairgrass formations. However, on the more southern Argentine Islands, kelp gulls routinely use D. antarctica and some mosses, transferring them from coastal hill tops where snow generally disappears earlier. Here, the gulls appear to be selective still, as they rarely use some mosses, such as Polytrichum strictum, that are abundant near the nesting locations. In the Argentine Islands area, we documented long-range transfer of the Antarctic hairgrass and some other vegetation materials from places of abundance to bare rocks of low islands lacking developed vegetation. This demonstrates the potential of the gulls to serve as dispersal and gene pool exchange agents for the local terrestrial biota in the maritime Antarctic, especially between highly isolated populations from small islands and ice-free areas.


Tardigrades from Larus dominicanus Lichtenstein, 1823 nests on the Argentine Islands (maritime Antarctic)

February 2018

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615 Reads

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37 Citations

Polar Biology

Tardigrada in Antarctic regions are poorly known. The aim of this study was to examine for tardigrades the nests material of the kelp gull (Larus dominicanus Lichtenstein, 1823) in maritime Antarctic and discuss the possible ways of migration and dispersion of tardigrades by birds. We also discuss the influence of bird’s guano on the communities of microscopic invertebrates (mainly tardigrades). In the positive samples (mainly bryophytes and lichens) of seven Larus dominicanus nests, collected on Ardley Island (near Fildes Peninsula) and Argentine Islands, ca. 850 tardigrades and their eggs were found. In total, 13 taxa (including Ramajendas sp.) were identified, and four are new to science: Bryodelphax olszanowskii sp. nov., Diphascon puchalskii sp. nov., D. rudnickii sp. nov. and Hypsibius conwentzii sp. nov.. Bryodelphax olszanowskii sp. nov. differs from known Bryodelphax species in the weglarskae group mainly by having a different ventral plate configuration. Belonging to the pingue group, D. puchalskii sp. nov. differs from other species by some quantitative characters and D. rudnickii sp. nov. by having the first and second macroplacoids situated very close to each other. Hypsibius conwentzii sp. nov. differs from other species of the genus Hypsibius, with two macroplacoids and septulum, by some morphological and morphometric characters. Summarizing, Antarctic tardigrades are a very diverse group, and birds can be responsible for translocation of small invertebrates (including tardigrades) inside of various parts of plants and lichens. They also deposit large amounts of guano, which provides a lot of nutrients for poor tundra ecosystems and support small invertebrate communities.


Citations (13)


... Storm-petrels (Hydrobatidae and Oceanitidae), along with other seabirds, are top predators, and indicators of the health of marine ecosystems, maintaining the structure of marine food web (Lascelles et al. 2012;Paleczny et al. 2015;Braun et al. 2021;Pande and Sivakumar 2022). Storm-petrels are small, delicate birds with relatively large heads that are found in all oceans and may congregate in very large numbers (Beck and Brown 1972). ...

Reference:

Gastrointestinal helminths of two storm-petrel species, Oceanites oceanicus and Fregetta tropica, (Aves: Oceanitidae) from Antarctica
Population decline of the cape petrel (Daption capense) on King George Island, South Shetland Islands, Antarctica

Polar Biology

... Although these recommendations are commonly adhered to in dronebased studies (eg Junda et al. 2015;Rümmler et al. 2016;Weimerskirch et al. 2018), they stem from investigations limited to only a few bird species. Additional research across varied taxa has demonstrated a wide range of behavioral responses to drones, influenced by the study species, drone type, and flight protocols (McEvoy et al. 2016;Lyons et al. 2018;Rümmler et al. 2021;Polensky et al. 2022). While these studies facilitated the first meta-analysis on bird reactions to drones (de Leija et al. 2023), current reviews have failed to incorporate statistical approaches with available literature to provide recommendations across various drone types and flying protocols, as well as focal bird species and life stages. ...

Effects of UAV overflight height, UAV type, and season on the behaviour of Emperor penguin adults and chicks
  • Citing Article
  • June 2021

Remote Sensing Applications Society and Environment

... However, these surveys are subject to limitations, including high costs and inherent risks for researchers (Sasse 2003). Whereas the use of uncrewed aerial vehicles (also known as drones) has proven a timely alternative to solve disturbance issues, with most studies showing little to no response from the birds (Ellis-Felege et al. 2021, Rümmler et al. 2021, Geldart et al. 2022, there is still variation in response that depends on the monitored species (Marchowski 2021, de Leija et al. 2023). Thus, potentially stressful monitoring should be ground-truthed to mitigate potential negative impacts. ...

Emperor penguin reactions to UAVs: First observations and comparisons with effects of human approach
  • Citing Article
  • May 2021

Remote Sensing Applications Society and Environment

... Megrivirus has been detected in fecal and respiratory samples of healthy and diseased poultry and birds in previous studies (Honkavuori et al., 2011;Liao et al., 2014;Boros et al., 2017;Gerber et al., 2019;Yinda et al., 2019;Kwok et al., 2020;Haji Zamani et al., 2023). In the present study, the identification and characterization of four novel megrivirus strains, PICV1, PICV19, PICV21, and PICV22, from avian fecal samples represent a significant contribution to our understanding of the genetic diversity and evolution within the Megrivirus genus. ...

Penguin megrivirus, a novel picornavirus from an Adélie penguin (Pygoscelis adeliae)

Archives of Virology

... It is often essential to distinguish the target species from other taxa [38]. Colour and size may be diagnostic, e.g., walrus Odobenus rosmarus tend to be grey to cinnamon brown (Figure 3c,d) and are larger than the other pinnipeds in the Arctic [39]. ...

DETECTING ANTARCTIC SEALS AND FLYING SEABIRDS BY UAV

ISPRS Annals of the Photogrammetry Remote Sensing and Spatial Information Sciences

... However, two studies compared both approaches. In one, the vertical approach provoked more reactions (Vas et al. 2015), whereas in the other no conclusive differences were detected (Rümmler et al. 2018). Vertical flights, which cause the drone to fly straight toward the target, are possibly more intimidating for birds than horizontal flights, where the drone never directly targets birds. ...

Sensitivity of Adélie and Gentoo penguins to various flight activities of a micro UAV

Polar Biology

... Colobanthus quitensis and Deschampsia antarctica are the only flowering plants that naturally colonize the Antarctica. Current studies explain the ecological success of the two species in Antarctica mainly by their association and root microbiota management which gives the necessary advantage in survival (Ozheredova et al. 2015, Parnikoza et al. 2018. The role of the rhizosphere and endosphere bacterial communities in facilitated uptake of nutrients from the soil or in the ability to tolerate the harsh conditions (salt stress and nutrient deficiency) is reported (e.g. ...

Spread of Antarctic vegetation by the kelp gull: comparison of two maritime Antarctic regions

Polar Biology

... Since the beginning of the 20th century, more than 70 eutardigrade and heterotardigrade species have been reported from Antarctica. Some, possibly many, of these species are thought to be endemic to Antarctica, while others have been suggested to be cosmopolitan species or even accidentally introduced by humans, however, as with other Antarctic microinvertebrate groups, most Antarctic tardigrades have yet to be subjected to molecular phylogenetic analyses (Binda et al., 2005;Convey & McInnes, 2005;Dastych, 1984Dastych, , 2018Guidetti et al., 2014Guidetti et al., , 2017Kaczmarek et al., 2014Kaczmarek et al., , 2018Kaczmarek, Mioduchowska, et al., 2020a;Kihm et al., 2020;Lukashanets et al., 2021;McInnes, 2010;Mioduchowska, Kačarevi c, et al., 2021a;Nelson et al., 2020;Pilato et al., 2012Pilato et al., , 2017Robertson et al., 2020;Short et al., 2022;Tsujimoto et al., 2014Tsujimoto et al., , 2020Tumanov, 2022;Vecchi, Cesari, et al., 2016a;Velasco-Castrill on, Gibson, & Stevens, 2014a). ...

Tardigrades from Larus dominicanus Lichtenstein, 1823 nests on the Argentine Islands (maritime Antarctic)

Polar Biology

... The majority of these viruses were described from metagenomic surveys, but some have been cultured, including harbor seal (Phoca vitulina) picornavirus (HsPV) and ribbon seal (Histriophoca fasciata) picornavirus (RsPV) 16 ; ringed seal (Phoca hispida) picornavirus 1 (SePV-1) 17 . Whereas Megrivirus E1 isolate from Adelie penguin feces 18 , sub-Antarctic fur seal (Arctocephalus tropicalis) sakobuvirus, fur seal (Arctocephalinae spp.) picorna-like virus, South American fur seal (Arctocephalus australis) picornavirus 19 ; harbor seal phopivirus, harbor seal Hepatovirus B 20 ; California sea lion (Zalophus californianus) sapelovirus 1 and 2 21 , Fur seal picorna-like virus from Arctocephalus gazelle 22 have not been isolated in cell culture. A single report of a picornavirus having been cultured from a cetacean, the bottlenose dolphin Tursiops truncatus (bottlenose dolphin enterovirus), was previously described 23 . ...

Genome Sequence of a Novel Picorna-Like RNA Virus from Feces of the Antarctic Fur Seal (Arctocephalus gazella)

Genome Announcements

... Advancements in satellite remote sensing have enhanced monitoring techniques, enabling the detection of changes in penguin abundance (e.g. Barber-Meyer et al., 2007;Lynch & Schwaller, 2014;Mustafa et al., 2017;Pfeifer et al., 2019), and local-scale ecosystem monitoring research (e.g. Brown, 2018;Fretwell & Trathan, 2009Fretwell et al., 2015). ...

Monitoring penguin colonies in the Antarctic using remote sensing data