James W. Bartolome’s research while affiliated with University of California, Berkeley and other places

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Publications (74)


Grassland species occur along geographic and climatic gradients to estimate niches
a, Occurrence of grassland species in the CFP, retrieved from the GBIF data (grey points), highlighting two example species, D. californica in the north (blue points) and S. pulchra in the south (red points). b, Species occurrence in climate space of mean annual temperature and annual precipitation, retrieved from the CHELSA data (grey), highlighting the same two example species, D. californica under cool and wet climates (blue) and S. pulchra under warm and dry climates (red). c, Estimated climatic niche centroids from the medians of temperature and precipitation for each species (grey), highlighting the two species (blue and red).
Grassland community shifts from long-term observations
Consistent with climate warming and drying, grassland communities shift dominance to species associated with warmer (increasing CTI) and drier (decreasing CPI) locations in 12 long-term observational sites across the CFP (red trend lines determined by linear regression and significant slopes by two-sided t-test; NS: P > 0.05, *P ≤ 0.05, **P ≤ 0.01, ***P ≤ 0.001). Refer to Extended Data Table 1 for sample sizes. The box plots show the median (centre), the first and third quartiles (bounds of the box), the range extending to the smallest and largest values within 1.5 times the interquartile range from the first and third quartiles (whiskers) and outliers beyond this range (points). The map shows the geographical distribution of the 12 sites with grassland percentage cover (green) from MODIS land-cover-type data.
Grassland community shifts from a long-term experiment
Warming treatment causes communities to shift dominance to species associated with warmer (CTI) and drier (CPI) locations in the Jasper Ridge Global Change Experiment. The orange background shades denote phase 1 (+80 W m⁻² heating) in 1999–2002, phase 2 (+100 W m⁻² heating) in 2003–2009 and phase 3 (+250 W m⁻² heating) in 2010–2014. Ambient plots (n = 72) and warming plots (n = 64) are in black and red, respectively. Effects of warming during each phase of treatment were estimated by linear mixed-effects models (two-sided t-test; NS: P > 0.05, ***P ≤ 0.001). Box plots show the median (centre), the first and third quartiles (bounds of the box), the range extending to the smallest and largest values within 1.5 times the interquartile range from the first and third quartiles (whiskers), and outliers beyond this range (points).
Changes in species abundance during grassland community shifts in the observations and experiment
a, Across the 12 observational sites, climatic niche centroids for species with a significant increase in abundance over time (open green circles), with a significant decrease in abundance over time (open orange circles), established (filled green circles), extirpated (filled orange circles) and all other species (open grey circles) (two-sided t-test, P ≤ 0.05). The circle size is proportional to the species’ relative abundance in the community. b, In phase 3 of the experiment, climatic niches for species with increases (green), decreases (orange) and no change in abundance (grey) (two-sided t-test, P ≤ 0.05). c, Across the observations, the summary of climatic niches for species with an increase (n = 94), a decrease (n = 103) and no change (n = 690) in abundance over time. Box plots show the median (centre), the first and third quartiles (bounds of the box), the range extending to the smallest and largest values within 1.5 times the interquartile range from the first and third quartiles (whiskers), and outliers beyond this range (points). The levels of significance and P values are from two-sided Wilcoxon tests for pairwise comparisons (NS: P > 0.05, *P ≤ 0.05, **P ≤ 0.01, ***P ≤ 0.001). d, In the experiment, the summary of climatic niches for species with an increase (n = 15), a decrease (n = 37) and no change (n = 495) in abundance between ambient and warming plots. Descriptions for the box plots and statistics follow c.
Grassland community shifts synthesized from both the observations and the experiment
a, Community compositions at the 12 observational sites and the experimental site are described by the median CTI (°C) and CPI (mm), positioned in estimated species’ climatic niche centroids (median, grey). The inset rectangle shows the extent of b. b, Communities shift in a consistent direction in the climate space in the observations and experiment. For the observational sites, the arrows point from the start to the end of the sampling period; for the experiment site, the arrows point from ambient to warming treatments. The CTI–CPI extent is identical in c, whereas the inset rectangle shows the extent of d. c, Communities shift significantly in 8 of 12 observational sites. d, Communities shift significantly, primarily in the phase 3 warming of the experiment. In b–d, arrows are set to be semi-transparent for sites with non-significant linear temporal trends in either CTI or CPI and for phases with non-significant differences between the ambient and warming treatments in either CTI or CPI (two-sided t-test, P > 0.05). Refer to Figs. 1 and 2 for P values for each test.
Rapid shifts in grassland communities driven by climate change
  • Article
  • Full-text available

October 2024

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410 Reads

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3 Citations

Nature Ecology & Evolution

Kai Zhu

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Yiluan Song

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Josephine C. Lesage

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[...]

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Many terrestrial plant communities, especially forests, have been shown to lag in response to rapid climate change. Grassland communities may respond more quickly to novel climates, as they consist mostly of short-lived species, which are directly exposed to macroclimate change. Here we report the rapid response of grassland communities to climate change in the California Floristic Province. We estimated 349 vascular plant species’ climatic niches from 829,337 occurrence records, compiled 15 long-term community composition datasets from 12 observational studies and 3 global change experiments, and analysed community compositional shifts in the climate niche space. We show that communities experienced significant shifts towards species associated with warmer and drier locations at rates of 0.0216 ± 0.00592 °C yr⁻¹ (mean ± s.e.) and −3.04 ± 0.742 mm yr⁻¹, and these changes occurred at a pace similar to that of climate warming and drying. These directional shifts were consistent across observations and experiments. Our findings contrast with the lagged responses observed in communities dominated by long-lived plants and suggest greater biodiversity changes than expected in the near future.

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Heterogeneous soil properties across the landscape
Abiotic and biotic environmental factors influence soil organic matter (SOM) and soil organic carbon (SOC)
Using Ecological Site Descriptions to make ranch-level decisions about where to manage for soil organic carbon

May 2022

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37 Reads

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1 Citation

California Agriculture

Maintaining and enhancing soil organic carbon storage can mitigate climate change while promoting forage growth. California has adopted incentive programs to promote rangeland practices that build soil organic carbon. However, there is no standard framework for assessing the baseline level of soil organic carbon at the ranch scale. Here, we use the Ecological Site Description — a land-type classification system — to help ranch managers set priorities about where to implement practices to increase soil organic carbon. We measured baseline carbon stocks at 0 to 15 and 15 to 30 centimeters' depth across three ecological sites and two vegetation states (shrubland and grassland) at Tejon Ranch, California. We discovered increased levels of soil carbon at ecological sites in higher elevations, and more soil carbon in shrublands as compared to grasslands. Slope, elevation, and soil texture, as well as plant litter and shrub cover, were significant predictors of soil carbon. The Ecological Site Description framework can serve as an important tool to help range managers keep carbon in the soil and out of the atmosphere.



Incorporating diversity measures into Ecological Site Descriptions to manage biodiversity on heterogeneous landscapes

June 2020

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221 Reads

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5 Citations

Rangelands

On the Ground •We examined whether diversity metrics could be incorporated into the Ecological Site Descriptions and State and Transition Models (ESD-STM) framework to manage multiple goals including biodiversity on heterogeneous landscapes. •We evaluated plant diversity in two vegetation states (i.e., grassland and shrubland) across three ecological sites in Southern California and found that alpha diversity differed by ecological site and vegetation state. •Functional diversity remained similar across our three ecological sites. •Beta diversity between vegetation states was higher than that within each state—in other words, two states support more dissimilar vegetation communities than one state alone. •Describing both biodiversity metrics and forage values in ESD-STM may help guide conservation planning on working ranches, such as the Tejon Ranch in Southern California.


Figure 1. Baccharis pilularis absolute percent cover by treatment, in burned and unburned shrub plots in Point Pinole Regional Shoreline, California, 2009-2012. Burns occurred after data collection in 2009 and 2010. Thin lines represent individual plots; thick lines averages for each treatment type.
Figure 2. Survival probability of 250 Baccharis pilularis shrubs over four years in burned and unburned plots, Point Pinole Regional Shoreline, California, 2009-2012. Burns occurred after data collection in years 0 and 1.
Figure 3. Herbaceous plant species absolute percent cover by burn treatment in herbaceous (left) and shrub (right) plots in Point Pinole Regional Shoreline, California, 2009-2012. Burns occurred after data collection in 2009 and 2010.
Using consecutive prescribed fires to reduce shrub encroachment in grassland by increasing shrub mortality

February 2020

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399 Reads

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11 Citations

Restoration Ecology

Woody plant encroachment into open grasslands occurs worldwide and causes multiple ecological and management impacts. Prescribed fire could be used to conserve grassland habitat but often has limited efficacy because many woody plants resprout after fire and rapidly re‐establish abundance. If fire‐induced mortality could be increased, prescribed fire would be a more effective management tool. In California's central coast, shrub encroachment, especially of Baccharis pilularis (coyote brush), is converting coastal prairie into shrub‐dominated communities, with a consequent loss of native herbaceous species and open grassland habitat. B. pilularis has not been successfully controlled with single prescribed fire events because the shrub resprouts and re‐establishes cover within a few years. We investigated whether two consecutive annual burns would control B. pilularis by killing resprouting shrubs, without reducing native herbaceous species or encouraging invasive plants. As expected, resprouting did occur; however, two years after the second burn, B. pilularis cover on burned plots was only 41% of the cover on unburned plots. Mortality of B. pilularis more than doubled following the second burn, likely maintaining a reduction in B. pilularis cover for longer than a single burn would have. Three native coastal prairie perennial grasses did not appear to be adversely affected by the two burns, nor did the burns result in increased cover of invasive species. Managers wanting to restore coastal prairie following B. pilularis encroachment should consider two consecutive annual burns, especially if moderate fire intensity is achievable. This article is protected by copyright. All rights reserved.




Applying ecological site concepts and state-and-transition models to a grazed riparian rangeland

April 2018

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160 Reads

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8 Citations

Ecological sites and state‐and‐transition models are useful tools for generating and testing hypotheses about drivers of vegetation composition in rangeland systems. These models have been widely implemented in upland rangelands, but comparatively, little attention has been given to developing ecological site concepts for rangeland riparian areas, and additional environmental criteria may be necessary to classify riparian ecological sites. Between 2013 and 2016, fifteen study reaches on five creeks were studied at Tejon Ranch in southern California. Data were collected to describe the relationship between riparian vegetation composition, environmental variables, and livestock management; and to explore the utility of ecological sites and state‐and‐transition models for describing riparian vegetation communities and for creating hypotheses about drivers of vegetation change. Hierarchical cluster analysis was used to classify the environmental and vegetation data (15 stream reaches × 4 years) into two ecological sites and eight community phases that comprised three vegetation states. Classification and regression tree (CART) analysis was used to determine the influence of abiotic site variables, annual precipitation, and cattle activity on vegetation clusters. Channel slope explained the greatest amount of variation in vegetation clusters; however, soil texture, geology, watershed size, and elevation were also selected as important predictors of vegetation composition. The classification tree built with this limited set of abiotic predictor variables explained 90% of the observed vegetation clusters. Cattle grazing and annual precipitation were not linked to qualitative differences in vegetation. Abiotic variables explained almost all of the observed riparian vegetation dynamics—and the divisions in the CART analysis corresponded roughly to the ecological sites—suggesting that ecological sites are well‐suited for understanding and predicting change in this highly variable system. These findings support continued development of riparian ecological site concepts and state‐and‐transition models to aid decision making for conservation and management of rangeland riparian areas.


Livestock grazing supports native plants and songbirds in a California annual grassland

June 2017

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172 Reads

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27 Citations

Over eight years we measured the effects of plant community composition, vegetation structure, and livestock grazing on occurrence of three grassland bird species—Western Meadowlark (Sturnella neglecta), Horned Lark (Eremophila alpestris), and Grasshopper Sparrow (Ammodramus savannarum)—at sites in central California during breeding season. In California’s Mediterranean-type climatic region, coastal and inland grassland vegetation is dominated by exotic annual grasses with occasional patches of native bunchgrass and forbs. Livestock grazing, primarily with beef cattle, is the most widely used management tool. Compared with ungrazed plots, grazed plots had higher bare ground, native plant cover, and vertically heterogeneous vegetation. Grazed plots also had less plant litter and shorter vegetation. Higher native plant cover, which is predominantly composed of bunchgrasses in our study area, was associated with livestock grazing and north-facing aspects. Using an information theoretic approach, we found that all three bird species had positive associations with native plant abundance and neutral (Western Meadowlark, Grasshopper Sparrow) or positive (Horned Lark) association with livestock grazing. All species favored flatter areas. Horned Larks and Western Meadowlark occurred more often where there were patches of bare ground. Western Meadowlarks and Grasshopper Sparrows were most common on north-facing slopes, suggesting that these species may be at risk from projected climate change. These findings demonstrate that livestock grazing is compatible with or supports grassland bird conservation in Mediterranean-type grasslands, including areas with high levels of exotic annual grass invasion, in part because grazing supports the persistence of native plants and heterogeneity in vegetation structure. However, conservation of low-lying grasslands with high native species presence, and active management to increase the abundance of native plant species are also likely to be important for sustaining grassland birds long-term.



Citations (54)


... The ramifications of global climate change for ecosystems, especially in highly sensitive grassland ecosystems, where its impact is notably pronounced, have attracted considerable attention [1][2][3]. Covering approximately 20% of the global terrestrial surface, grasslands play a pivotal role in regulating the global carbon cycle and mitigating climate change [4][5][6]. ...

Reference:

Global Dynamics of Grassland FVC and LST and Spatial Distribution of Their Correlation (2001–2022)
Rapid shifts in grassland communities driven by climate change

Nature Ecology & Evolution

... carbon, a shift in social or ecological variables can indicate decreased ability of the system as a whole to absorb external pressures (e.g., climate change) and cope with limiting factors (e.g., water or nutrients) leading to spatial heterogeneity in carbon capture, similar to those observed in open landscapes (e.g., Aoyama et al. 2022). This example is consistent with real-world examples of variance in tree-growth rates and forest expansion or decline (e.g., Castruita-Esparza et al. 2019;Quadri et al. 2021) where if F becomes too low, more of the population would be expected to favor conservation or restoration policies (see Bauch et al. for graphic representation of variance, thresholds, and equilibria, when F is small and 1/(F + c) becomes large, thus incentivizing conservation). ...

Using Ecological Site Descriptions to make ranch-level decisions about where to manage for soil organic carbon

California Agriculture

... A contemporary example is the music video for the song Black Diamond by DJ Stargazers in partnership with singer Kate Louise Smith, directed by Anton Polygalov and recorded in 2015 in the evergreen oak savannah of the California coast (Polygalov, 2015). The California oak savannah is visually similar to the Brazilian Cerrado but has a Mediterranean climate characterized by the cold, wet winters and hot, dry summers that last, on average, six months a year (Allen-Diaz, Bartolome & McClaran, 1999). Both the lyrics and the music video for Black Diamond present a visceral involvement with tensions, turmoil, problems, and individual anxieties, which Lawrence Williams (2016) highlights as a fundamental characteristic of the progressive variant of trance music. ...

California Oak Savanna
  • Citing Chapter
  • July 1999

... Firstly, Adams et al (1995) described a new method by using soil, hydrology, and vegetation characteristics. Subsequently, this method was developed for Rangeland Ecological Site Description that uses ecological indicators to assess the rangeland and has been used by many researchers (Pyke et al., 2002;Bestelmeyer and Brown, 2010;Williams et al., 2016;Aoyama et al., 2020). The RESD method investigates the ecological characteristics of the soil, hydrology, and vegetation of the rangelands that could be used to determine the proper rangeland management method. ...

Incorporating diversity measures into Ecological Site Descriptions to manage biodiversity on heterogeneous landscapes

Rangelands

... In the case of the controlled burn site, our findings suggest that the ecological benefits of this intentional burning (e.g., increased vegetation productivity due to greater access to water, nutrients, and sunlight) may last for at least three growing seasons following the burn. In this ecosystem, the optimal return interval of intentional burning may be instead driven by the desire to reduce the encroachment of shrubs and trees, which, if given more than three growing seasons to establish, may be difficult to kill with low-severity fire [15,47]. ...

Using consecutive prescribed fires to reduce shrub encroachment in grassland by increasing shrub mortality

Restoration Ecology

... In the absence of existing quantitative land potential and/or ecological state-based classifications, clustering can enable users to determine whether there are plant communities that occur above or below functionally important thresholds for soil erosion and other ecosystem processes. If consistent with understanding of the ecological dynamics of an assessment area, clusters can also be used as the basis for developing ecological state concepts that can be linked to management actions/triggers (e.g., Ratcliffe et al., 2018;Svejcar et al., 2018;Heller et al., 2022). A further benefit is that clustering can be applied at different scalese.g., within a soil/ecological site type on a farm/ranch or within broad soilgeomorphic units at regional scales (e.g., Salley et al., 2015). ...

Applying ecological site concepts and state-and-transition models to a grazed riparian rangeland

... Domestic ruminants are a critical part of our food systems , converting low quality forage into protein and other essential nutrients while supporting livelihoods and economies (Houzer and Scoones, 2021;Schrobback et al., 2023). In some cases, livestock can help avoid conversion of natural grasslands, thereby maintaining habitats, biodiversity, and ecological processes (Gennet et al., 2017;O'Grady et al., 2024). However, they are also linked to land degradation, habitat loss, decreased water quality, and greenhouse gas (GHG) emissions (Meier et al., 2020;Bilotto et al., 2023). ...

Livestock grazing supports native plants and songbirds in a California annual grassland

... Diverse methodologies have been employed in this field. Notably, chart analysis [12] and model construction [13] have been prevalent in studies concerning the conservation and management of landmark landscapes. ...

Applying Ecological Site Concepts to Adaptive Conservation Management on an Iconic Californian Landscape

Rangelands

... For example, Meunier and Lavoie (2012) identified conversion of gravel roads to pavement as the key driver of Galium mollugo spread inside a national park. Successful site restoration may depend more on local seed rain than patterns of landscape spread; for example, Berleman et al. (2016) found that effective post-fire control of medusahead (Elymus caput-medusae) depended on controlling seed rain from adjacent areas. Understanding the role of seed rain falls under the conceptual framework of propagule pressure (D'Antonio et al. 2001), an active area of ecological research (Arruda et al. 2018). ...

Prescribed Fire Effects on Population Dynamics of an Annual Grassland
  • Citing Article
  • August 2016

Rangeland Ecology & Management

... Indirect evidence for land conversion associated with agriculture and grazing is also evident in the Chorro marsh pollen data, where shortly after ~1770 CE the proportion of arboreal taxa decreases, and the abundance of undifferentiated Asteraceae taxa increases substantially (Fig. 6), likely reflecting a transition on the landscape from woodland to grassland and pastures. Livestock grazing is known to destabilize sediments and increase erosion due to disturbance by animals and trampling of vegetation; these issues are magnified in riparian zones, as animals congregate around water and vegetation (Armour et al., 1991;Fleischner, 1994;Jackson and Bartolome, 2007). Therefore, sediment destabilization and subsequent erosion from livestock disturbance would likely have increased sediment deposition at the MBSM. ...

Grazing Ecology of California Grasslands
  • Citing Chapter
  • March 2007