James S. Franks’s research while affiliated with University of Southern Mississippi and other places

This note details the first formal report of a spinal deformation in whale sharks, Rhincodon typus. An individual whale shark with suspected kypholordoscoliosis was observed at Ewing Bank in the Gulf of Mexico during aggregation events in 2010 and 2013. Despite the significant deformity, the shark was observed feeding on fish eggs at the surface during both encounters. Based on satellite tag tracking, its movements, temperature preferences, and depth use were within the range of other whale sharks from the region.

Atlantic tarpon Megalops atlanticus are highly migratory sportfish that support recreational fisheries throughout their range. In US waters, juveniles can be found in coastal and estuarine habitats along the Gulf of Mexico and Atlantic seaboard, with temperature limiting their northern latitudinal distribution. Juveniles may overwinter in these areas during the first several years of life. Low temperatures are known to cause mortality in adults, but the challenges of temperature are less understood for juveniles. Furthermore, salinity, which can change dramatically in these habitats, may have a synergistic effect with temperature. To examine the physiological effects of temperature and salinity on juvenile tarpon, wild fish were acclimated to a range of conditions that potentially occur in the northern range of their estuarine habitats. The haematology of juvenile tarpon was examined in two salinity (≤2 and ≥30 ppt) and temperature (15 and 25°C) treatments, followed by a low‐temperature tolerance test. After 2 weeks in treatment conditions, blood samples were analysed for haematocrit, pH, red blood cell concentration, haemoglobin content and plasma osmolality. Increased plasma osmolality was observed in fish at low temperature (15°C compared to 25°C) and at high salinity (≥30 ppt compared to ≤2 ppt). Blood pH was increased at 15°C compared to 25°C, with the highest pH at 15°C and low salinity. Haemoglobin, haematocrit and red blood cell concentration were higher at 25°C than 15°C, with haemoglobin lowest at 15°C and low salinity. For the low‐temperature tolerance test, all fish were acclimated to 15°C for 2 weeks, then transferred to separate tanks where temperature was gradually decreased at 0.9 ± 0.1°C/h until fish lost equilibrium. Fish at low salinity lost equilibrium more rapidly (1 ppt, 12.65 ± 0.46°C) than fish at high salinity (30 ppt, 11.26 ± 0.14°C). The results indicate juvenile tarpon are susceptible to low temperature, which is exacerbated by low salinity, findings useful in the assessment of juvenile tarpon overwintering habitat.

Blackfin tuna (Thunnus atlanticus) is a small tuna distributed in the western Atlantic Ocean where it is exploited by growing recreational and commercial regional fisheries. In this work, genome-wide genetic variation was analysed to investigate the occurrence of stock subdivision. A de novo assembly of the blackfin tuna genome was generated using Illumina paired-end sequencing data and applied as a reference for population genomic analysis of specimens from nine localities (average sample size per locality n = 72) spanning most of the blackfin tuna distribution range. A total of 2139 single-nucleotide polymorphisms were discovered and genotyped using the double-digest restriction associated DNA sequencing. Pairwise exact homogeneity tests were significant in 24 out of 36 population pairs and significant spatial autocorrelation of genotypes was observed for specimens collected within 2250 km of each other. However, divergence among locality samples was very low (pairwise FST range 0.0002–0.0025) and significant temporal variations were detected in localities sampled multiple times. Approaches to detect cryptic groups de novo were unsuccessful. Additional sampling is warranted to determine if multiple stocks need to be defined for management and assess temporal and spatial patterns of gene flow connecting them.

The current study examined 93 Swordfish, Xiphias gladius, (64 females, 27 males, 2 unknown) ranging in size from 77.6–246.3 cm lower jaw fork length (LJFL) from the northern Gulf of Mexico (GOM). Samples were collected between March and August in 2005–2007, 2017–2019 and 2021. Age estimates of 51 Swordfish resulted in a maximum observed age of 11 years (205.0 cm LJFL) and 7 years (190.4 cm LJFL) for females and males, respectively. Observed and back-calculated length-at-age data were fitted to four growth models (two- and three- parameter von Bertalanffy, Gompertz, and logistic). The two-parameter von Bertalanffy was the model that best fit the data (Linf = 210.2 cm LJFL, k = 0.25). Histological examination of gonadal tissue from 91 fish indicated that females reached 50% and 95% physiological maturity at 116 ± 6 cm LJFL and 143 ± 8 cm LJFL, respectively, corresponding to ages 2-3 years. All males >82 cm LJFL were physiologically sexually mature. Only 10% of females were reproductively active, with spawning capable females captured in June. Reproductively active females exhibited asynchronous oocyte development indicating batch spawning. Most males (96%) were spawning capable from April–August. Philometra sp. infection was found in all ovaries examined (n = 16) but with low abundance (2.25 ± 0.42); male philometrids were more prevalent than females (91.7% and 66.7%, respectively). Swordfish in the northern GOM appear to achieve sexual maturity at a younger age, grow faster, and have shorter theoretical longevity than previous reports from other regions world-wide.

Age and growth of early‐life‐stage Atlantic tarpon Megalops atlanticus collected from Mississippi coastal waters in the northcentral Gulf of Mexico (GOM) are described using otolith microstructure analysis. Tarpon leptocephali (n = 95, 16.0—27.8 mm standard length, LS) collected from June throughOctober 2013—2018, ranged in age from 22 to 43 days (mean = 30.9 ± 0.5 days). Leptocephalus somatic growth rates ranged 0.46—1.24 mm day⁻¹ (mean = 0.76 ± 0.02 mm day⁻¹), and leptocephalus otolith growth rates ranged 1.78—3.97 μm day⁻¹ (mean = 2.58 ± 0.04 μm day⁻¹). Growth rates were inversely correlated to leptocephalus age, indicating the shrinkage phase associated with leptocephalus metamorphosis. Juvenile tarpon (n = 358, 50—359 mm fork length, LF) were collected from August through December 2007—2018. Juveniles exhibited a positive allometric relationship (adjusted R² = 0.99, P < 0.001) between length and mass. The age of 100 juveniles (71—277 mm LF) ranged from 76 to 174 days. Juvenile growth rate was estimated as 1.56 ± 0.11 mm day⁻¹. Significant (P < 0.001) linear relationships were found between juvenile age and otolith metrics, including otolith mass (R² = 0.81) and radius (R² = 0.68). Evaluation of the backcalculated hatch dates suggests that specimens in the collection hatched from late May through mid‐September with slight peaks during July and August. A Rao's Spacing Test of Uniformity indicates the presence of significant lunar periodicity in leptocephalus hatch dates (n = 95, U = 250.1, P < 0.05), with 50% of the leptocephali hatched within 5 days (before or after) of the full moon. This study fills critical gaps in the scientific knowledge of tarpon and provides estimates of early‐life‐history metrics for an iconic game fish at the northernmost extent of its GOM range.

The Tripletail, Lobotes surinamensis, is a warm-water pelagic fish that is increasingly targeted by U.S. anglers. The superior quality of Tripletail flesh coupled with the lack of domestic commercial fisheries stimulated interests to develop aquaculture of this species. In this work, photo-thermal conditioning of captive-held broodstocks promoted maturation in females, but spontaneous spawning was not observed. GnRHa slow-release implants induced ovulation in late vitellogenic females but fertility remained below 10% when GnRHa was administered alone. However, spawns with high fertility (up to 85%) were obtained when a dopamine antagonist was administered in conjunction with GnRHa implants indicating dopamine inhibition impaired final gamete maturation, in particular sperm production in males, in aquaculture conditions. Tripletail larvae successfully initiated exogenous feeding on enriched rotifers followed by Artemia nauplii and were weaned to prepared feeds at 25 days post hatch, yet with low survival through the late phases of larval culture. Pilot grow-out trials at low density in recirculating systems revealed impressive growth rates averaging over 170 g/month through a market size above 1 kg. While protocols for hatchery culture and grow-out still need to be optimized, current data suggest that Tripletail could become a successful species for U.S. marine aquaculture.

In the northern Gulf of Mexico (GOM), whale sharks (Rhincodon typus) form large aggregations at continental shelf-edge banks during summer; however, knowledge of movements once they leave aggregation sites is limited. Here we report on the seasonal occurrence of whale sharks in the northern GOM based on over 800 whale shark sightings from 1989 to 2016, as well as the movements of 42 whale sharks tagged with satellite-linked and popup satellite archival transmitting tags from 2008 to 2015. Sightings data were most numerous during summer and fall often with aggregations of individuals reported along the continental shelf break. Most sharks (66%) were tagged during this time at Ewing Bank, a known aggregation site off the coast of Louisiana. Whale shark track duration ranged from three to 366 days and all tagged individuals, which ranged from 4.5 to 12.0 m in total length, remained within the GOM. Sightings data revealed that whale sharks occurred primarily in continental shelf and shelf-edge waters (81%) whereas tag data revealed the sharks primarily inhabited continental slope and open ocean waters (91%) of the GOM. Much of their time spent in open ocean waters was associated with the edge of the Loop Current and associated mesoscale eddies. During cooler months, there was a net movement southward, corresponding with the time of reduced sighting reports. Several sharks migrated to the southwest GOM during fall and winter, suggesting this region could be important overwintering habitat and possibly represents another seasonal aggregation site. The three long-term tracked whale sharks exhibited interannual site fidelity, returning one year later to the vicinity where they were originally tagged. The increased habitat use of north central GOM waters by whale sharks as summer foraging grounds and potential interannual site fidelity to Ewing Bank demonstrate the importance of this region for this species.

Since 2011, pelagic Sargassum has experienced extraordinary blooms in the Tropical Atlantic where a system of persistent but seasonally variable currents has retained and consolidated it in large masses. Although beneficial at sea, principally as a unique pelagic habitat, when Sargassum inundates the nearshore environment it can have catastrophic effects on tourism, fisheries, health, and local ecosystems. Providing advanced warning of arrival dates of large masses of Sargassum is critical for enabling preparations and planning for its removal, use, and mitigation. Predictions of arrival time and location involve satellite identification of Sargassum at sea together with ocean current data for forward model tracking. However, forecast ocean current data are generally valid for only 5—7 days. In this study, ocean currents from 2 models (HYCOM and OSCAR) are validated against satellite tracked drifters from the Global Drifter Program with vector correlation and with skill in replicating a drifter pathway. Various wind additions to the models are also tested. Although both models capture the surface current systems in the Tropical Atlantic, they are mediocre in performance along both boundaries. In contrast, a drifter based current data model with 0.5% wind addition had high skill levels. This skill—tested drifter—based model was then used to determine marine connectivity across the Tropical Atlantic and suggests a much broader spread of Sargassum in the eastern Tropical Atlantic than is presently observed by satellites, conforming to earlier hypotheses. This model forms the basis for seasonal scale Sargassum forecasting.

Effective sustainable management of marine fisheries requires that assessed management units (that is, fish stocks) correspond to biological populations. This issue has long been discussed in the context of Atlantic bluefin tuna (ABFT, Thunnus thynnus) management, which currently considers two unmixed stocks but does not take into account how individuals born in each of the two main spawning grounds (Gulf of Mexico and Mediterranean Sea) mix in feeding aggregations throughout the Atlantic Ocean. Using thousands of genome‐wide molecular markers obtained from larvae and young of the year collected at the species’ main spawning grounds, we provide what is, to the best of our knowledge, the first direct genetic evidence for “natal homing” in ABFT. This has facilitated the development of an accurate, cost‐effective, and non‐invasive tool for tracing the genetic origin of ABFT that allows for the assignment of catches to their population of origin, which is crucial for ensuring that ABFT management is based on biologically meaningful stock units rather than simply on catch location.