James A. Dumesic’s research while affiliated with University of Wisconsin–Madison and other places

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Publications (447)


Selective Hydrogenation of Furfural Acetone over a Cu Catalyst: Combined Theoretical and Experimental Study
  • Article

April 2025

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1 Read

ACS Catalysis

Michael Rebarchik

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Evangelos Smith

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Hochan Chang

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[...]

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Manos Mavrikakis

Atomistic representation of the main cage of SSZ‐13. In the center, the main cage with adjacent double six‐ring units, as well as the primitive unit cell is displayed. On the left, different Cu monomer exchange positions in the six ring (6R) and eight ring (8R) and Al configurations for Cu monomer anchoring are displayed. On the right, different exchange positions in the eight ring (8R, D‐A, and D‐B) and bridging the six ring and eight ring (6R/8R, D‐C and D‐D) and Al anchoring configurations for Cu dimers and trimers studied in this work are shown. In atomistic images, yellow atoms correspond to Si and red atoms to O, respectively. Ring structures for ion exchange are represented in a ball and stick model, while the remainder of the cage is displayed in a stick representation. Dashed lines are used to highlight the position of exchange sites with respect to the main cage. In schematic representations, black lines correspond to a Si(Al)‐O‐Si link, Si atoms are positioned at the vertices, and red circles indicate the position of the Al atoms.
(a)–(d): Phase diagrams for Cu‐exchanged SSZ‐13 with respect to PO2 ${{P}^{{O}_{2}}}$ and T ((a), (b), and (e)), and PN2O ${{P}^{{N}_{2}O}}$ and T ((c) and (d)) for all four dimer exchange sites and monomer exchange sites 1Al ((a), (c)) and 2Al‐A ((b), (d)). The standard pressure P0 is defined as 1 bar. The thermodynamically preferred sites are indicated by regions of identical color, and the site type is indicated by the labels. The included Al configurations are indicated by schematic representations on the right side of the phase diagrams, which correspond to Figure 1. In (a) through (d), activation conditions (AC) and reaction conditions (RC) are marked by a black dot. (e): Potential reaction paths in the stepwise conversion with respect to PO2 ${{P}^{{O}_{2}}}$ and T. In path 1, marked by red arrows and labeled 1, first PO2 ${{P}^{{O}_{2}}}$ is reduced, and then the system is cooled, while in path 2, marked by blue arrows and labeled, the system is first cooled in O2 and then PO2 ${{P}^{{O}_{2}}}$ is reduced. (f): The most stable sites for activation in O2 and N2O for the four different dimer exchange sites under reaction conditions (RC). In atomistic representations, Si is shown in yellow, O in red, Al in grey, Cu in blue, and H in white, respectively. Schematic representations of dimer/trimer exchange sites correspond to Figure 1. (For detailed explanations of phase diagram legends, see Figure S14 in the SI.
(a): Experimentally measured UV/Vis‐NIR spectra after activation and cooling to room temperature in O2 (Experiment‐O2) and N2O (Experiment‐N2O), and theoretically predicted optical spectra for the Cu dimers A‐Cu2O2H2, B‐Cu2O2H2, D‐Cu2OH, A‐Cu2O2, and B‐Cu2O2 (atomic structures shown to the right of the respective spectra). Experimentally, spectra were measured in a glove box atmosphere. For better readability, the full spectrum is shown on the right, and magnified spectra in the 10,000 cm⁻¹ to 25,000 cm⁻¹ range are shown on the left. Spectra are displayed as black, solid lines, and peak positions are marked by dashed, vertical lines. Numerical values are given in the vertical color legend. Additionally, the blue shaded area marks a region where a peak broadening is seen in experiments. For comparison, experimental spectra for activation in N2O and O2 are given as blue and red dashed lines (near the top of the left panel), respectively. (b): Experimentally measured Resonance Raman spectra after activation in O2 (Experiment‐O2) and N2O (Experiment‐N2O) after cooling to reaction conditions (T=473 K) in oxidizing agent flow, as well as theoretically modeled Raman spectra for selected Cu dimers (A‐Cu2O2H2, B‐Cu2O2H2, and A‐Cu2O2; atomic structures shown to the right of the respective spectra). Spectra are shown as black, solid lines and peak positions are marked by blue and red shaded areas, respectively. The color code of atomistic representations in A and B corresponds to Figure 2.
(a): Experimentally measured conversion of methane per cycle after activation in O2 and in N2O. (b) and (c): Calculated Free Energy diagrams at 473 K for the conversion of methane to methanol for four distinct active sites: A‐Cu2O2H2 ((b), green), D‐Cu2OH ((b), dark red), B‐Cu2O2 ((c), purple), and D‐Cu2O2 ((c), red). Maximum in curved lines denotes a transition state. For each reaction, reaction intermediates are schematically displayed, and energies are reported as Gibbs’ Free Energies in eV. Atomistic representations of intermediates of partial reactions, transition states, and of intermediates, and preferred spin states are provided in Supporting Information, section S5.
Exploring the Impact of Active Site Structure on the Conversion of Methane to Methanol in Cu‐Exchanged Zeolites
  • Article
  • Full-text available

April 2024

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69 Reads

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10 Citations

In the past, Cu‐oxo or ‐hydroxy clusters hosted in zeolites have been suggested to enable the selective conversion of methane to methanol, but the impact of the active site's stoichiometry and structure on methanol production is still poorly understood. Herein, we apply theoretical modeling in conjunction with experiments to study the impact of these two factors on partial methane oxidation in the Cu‐exchanged zeolite SSZ‐13. Phase diagrams developed from first‐principles suggest that Cu‐hydroxy or Cu‐oxo dimers are stabilized when O2 or N2O are used to activate the catalyst, respectively. We confirm these predictions experimentally and determine that in a stepwise conversion process, Cu‐oxo dimers can convert twice as much methane to methanol compared to Cu‐hydroxyl dimers. Our theoretical models rationalize how Cu‐di‐oxo dimers can convert up to two methane molecules to methanol, while Cu‐di‐hydroxyl dimers can convert only one methane molecule to methanol per catalytic cycle. These findings imply that in Cu clusters, at least one oxo group or two hydroxyl groups are needed to convert one methane molecule to methanol per cycle. This simple structure–activity relationship allows to intuitively understand the potential of small oxygenated or hydroxylated transition metal clusters to convert methane to methanol.

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Exploring the Impact of Active Site Structure on the Conversion of Methane to Methanol in Cu‐Exchanged Zeolites

April 2024

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23 Reads

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1 Citation

Angewandte Chemie

In the past, Cu‐oxo or ‐hydroxy clusters hosted in zeolites have been suggested to enable the selective conversion of methane to methanol, but the impact of the active site’s stoichiometry and structure on methanol production is still poorly understood. Herein, we apply theoretical modeling in conjunction with experiments to study the impact of these two factors on partial methane oxidation in the Cu‐exchanged zeolite SSZ‐13. Phase diagrams developed from first‐principles suggest that Cu‐hydroxy or Cu‐oxo dimers are stabilized when O2 or N2O are used to activate the catalyst, respectively. We confirm these predictions experimentally and determine that in a stepwise conversion process, Cu‐oxo dimers can convert twice as much methane to methanol compared to Cu‐hydroxyl dimers. Our theoretical models rationalize how Cu‐di‐oxo dimers can convert up to two methane molecules to methanol, while Cu‐di‐hydroxyl dimers can convert only one methane molecule to methanol per catalytic cycle. These findings imply that in Cu clusters, at least one oxo group or two hydroxyl groups are needed to convert one methane molecule to methanol per cycle. This simple structure‐activity relationship allows to intuitively understand the potential of small oxygenated or hydroxylated transition metal clusters to convert methane to methanol.





Controlling the toxicity of biomass-derived difunctional molecules as potential pharmaceutical ingredients for specific activity toward microorganisms and mammalian cells

April 2023

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27 Reads

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2 Citations

Green Chemistry

A biomass-derived difuran compound, denoted as HAH (HMF-Acetone-HMF), synthesized by aldol-condensation of 5-hydroxyfurfural (HMF) and acetone, can be partially hydrogenated to provide an electron-rich difuran compound (PHAH) for Diels-Alder reactions...





Citations (84)


... 49 Plasma-assisted catalysis for MTM 50 and CH 4 -to-HCN 18 and bimetallic molten salt catalysts in MP 51,52 demonstrated improved performance. The 2020s have emphasized sustainability: B 2 O 3 catalysts for CH 4 -to-HCOH conversion, 8 CH 4to-ACN to reduce energy demands, 15 Cu catalysts for CH 4 -to-HCN, 19 modeling tools for SRM 53 and ARM 54 optimization, DAM catalyst regeneration, 55 Cu-site stoichiometry optimization for MTM, 56 and low temperature plasma-assisted MP. 57 This review aims to provide a comprehensive analysis, with a primary emphasis on the latest advancements and cutting-edge innovations in the field of catalytic CH 4 conversion methods. It also aims to elucidate critical parameters and advantages, and address the intricate array of limitations, challenges, and prospective avenues within this domain. ...

Reference:

Innovative Catalysis Approaches for Methane Utilization
Exploring the Impact of Active Site Structure on the Conversion of Methane to Methanol in Cu‐Exchanged Zeolites

... The carbohydrate polymers in lignocellulosic biomass are cellulose and hemicellulose, which contain glucoside units with high carbon content and are a leading resource for environmentally friendly and reducing sugar production (Fujimoto et al. 2024). Reducing sugars are essential for producing valueadded commodity chemicals such as polymers, gasoline additives, drug substances, and dyestuff (Gyngazova et al. 2017;West et al. 2008;Chang et al. 2024). Hydrolysis is a crucial step in the conversion process of using cellulosic biomass to produce reducing sugars. ...

Development of sustainable processes for production of monomers and a pharmaceutical ingredient from lignocellulosic biomass
  • Citing Article
  • March 2024

Cell Reports Physical Science

... Among the valuable products, sorbic acid and its salt, potassium sorbate (KS), are widely utilized in the food and pharmaceutical industries as antimicrobial preservatives [13,14]. Our team recently demonstrated a catalytic method for the synthesis of KS from TAL [15]. Fig. 1(B) illustrates the previous approach for producing TALderived KS. ...

Catalytic Strategy for Conversion of Triacetic Acid Lactone to Potassium Sorbate
  • Citing Article
  • October 2023

ACS Catalysis

... This suggested accompanying the increase of pH value the number of H + ions in solution occupying the binding sites of B44 CPS might be evacuated. For example, the -NH 2 group present in CPSs undertook protonation at pH < 4, and the degree of protonation increased with the decrease of pH value ( −NH 2 + H + ⇋ −NH 3 + ) [40], along with the electrostatic interactions within and between CPS molecules also decreased ( −COOH ⇋ −COO − +H + ) [41,42], which would compete with metal ions for binding site. Conversely, the adsorption of Pb(II) by CPS remained at relatively high level at the pH values ranged 4.0-6.0. ...

A Coverage Self-Consistent Microkinetic Model for Vapor-Phase Formic Acid Decomposition over Pd/C Catalysts
  • Citing Article
  • February 2023

ACS Catalysis

... The contribution of crystalline cellulose in biomass samples can be followed by measuring the relative areas of C4 signals and also of C6 signals. Recently, Gilcher et al. [27] followed the evolution of cellulose microfibril in the enzymatic hydrolysis process through the deconvolution of the C4 signal into distinct sites. In the present work, C4 and C6 signals were not decomposed. ...

Evolution of the Cellulose Microfibril through Gamma-Valerolactone-Assisted Co-Solvent and Enzymatic Hydrolysis
  • Citing Article
  • February 2023

ACS Sustainable Chemistry & Engineering

... The interaction between the solid support and the organocatalyst [113], reactants [114], product [115] or solvent [116] can significantly impact catalytic activity. These interactions often manifest in various forms of adsorption: physisorption, involving forces like van der Waals interactions and hydrogen bonding, or chemisorption, which may involve ionic or covalent bonding. ...

Design of supported organocatalysts from a biomass-derived difuran compound and catalytic assessment for lactose hydrolysis
  • Citing Article
  • December 2022

Green Chemistry

... Lignin, as a major component of biomass, ranks among the most abundant natural renewable resources and possesses various aromatic structures [12][13][14]. In cellular walls of plants, lignin is mainly derived from three precursors (p-coumaryl, coniferyl, and sinapyl alcohol), forming various linkages of phenylpropane units (β O 4, β 5, β β, and so on), therefore constructing a natural polymer with complicated functional groups of aromatic rings, phenolic hydroxyl groups (Ar OH), aliphatic hydroxyl groups ( OH), methoxyl groups ( OCH 3 ), carbonyl groups ( C O), carboxyl groups ( COOH), and so forth [15][16][17][18][19]. Phenolic hydroxyls serve as common and critical reaction sites for polymerization and material preparation. ...

Poplar Lignin structural changes during extraction in γ-valerolactone (GVL)
  • Citing Article
  • January 2022

Green Chemistry

... Lactose can be hydrolyzed to produce a sweetening syrup containing galactose, glucose, and lactose. [29] Therefore, there is significant interest in further upcycling whey and its derived compounds. Galactose can be isomerized to tagatose using L-arabinose isomerase produced by microbial strains. ...

Production of glucose-galactose syrup and milk minerals from Greek yogurt acid whey
  • Citing Article
  • January 2022

Green Chemistry

... Synthesizing heavy distillate-range fuels through ethanol upgrading represents a market opportunity that the bioethanol industry needs to maintain its participation in the energy sector. 7 Recently, our group developed a three-stage process to produce diesel fuel 8,9 through catalytic upgrading of ethanol that encompasses the: (1) catalytic oligomerization of ethanol into longer chain alcohols through Guerbet coupling chemistry, 10,11 (2) hydrogenation of byproducts generated in the first reactor (mainly esters, aldehydes, and ketones) into alcohols, 12 and (3) bimolecular dehydration of the alcohols mixture over an acid catalyst to produce a blend of long-chain ethers. 13,14 We initially used hydroxyapatite (HAP) as the catalyst for ethanol conversion, 15,16 but later switched to a Cu/MgAlO x catalyst. ...

Reaction chemistry of ethanol oligomerization to distillate-range molecules using low loading Cu/MgxAlOy catalysts
  • Citing Article
  • August 2022

Applied Catalysis B Environmental

... As a potential way to replace traditional H2-mediated hydrogenation reactions, catalytic transfer hydrogenation (CTH) employs renewable and liquid organic hydrogen donors (e.g., alcohols, formic acid, etc.) so that the experimental operation can refrain from the use of high-pressure hydrogen, which can shorten the complexity and cost of experimental stride, and, thus, has lately attracted enormous attention in biomass conversion, as has been noted in many excellent articles [4,19,20]. Because hydrogenation reactions involve the conversion of hydroxyl, aldehyde and furan groups in the presence of hydrogen molecules, including C=O and C=C hydrogenation, decarbonation, and C-O and C-C hydrogenolysis, HMF hydrogenation provides a number of reaction pathways [15,[21][22][23]. Catalytic hydrogenation and hydrolysis reactions have been extensively researched because they can effectively reduce the oxygen content in furans, like other biomass-derived platform molecules. ...

Effects of Water Addition to Isopropanol for Hydrogenation of Compounds Derived from 5-Hydroxymethyl Furfural over Pd, Ru, and Cu Catalysts
  • Citing Article
  • August 2022

ACS Catalysis