J. Thomas Sims’s research while affiliated with University of Delaware and other places

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Publications (97)


fig. 1. maps of the united States showing (A) states with P indices as part of their nutrient management programs, including indices with subsurface components and those that have been assessed against runoff P loads, (B) the percentage of agricultural land in tile drainage across various physiographic regions, and (c) the percentage of agricultural land in ditch drainage across various physiographic regions. research locations where runoff P loads have been monitored and used in P index assessment are mapped in panels B and c. 
fig. 2. location of agricultural fields on the Delmarva Peninsula where intensive dissolved P loads in leachate and ditch water were collected and where soil core sampling was completed. load data and soil core samples were used to evaluate the subsurface P loss risk assessment methodologies of five regional P indices, including the Delaware Phosphorus Site index (De-PSi), two iterations of the maryland Phosphorus management Tool (mD-PmT and mD-PmT2), the north carolina Phosphorus loss Assessment Tool (PlAT), and the virginia Phosphorus index (vA-Pi). 
fig. 3. relationships between the subsurface P loss risk scores for (A) the Delaware Phosphorus Site index (De-PSi sub ), (B) the maryland Phosphorus management Tool (mD-PmT sub ), (c) the maryland Phosphorus management Tool version 2 (mD-PmT2 sub ), and (D) the north carolina Phosphorus loss Assessment Tool (nc-PlAT sub ) and dissolved P loads in leachate collected over an 8-wk period after surface poultry litter application (total P rate = 52 kg ha −1 ) to intact soil columns (Kleinman et al., 2015a). open circles represent leaching loads from an artificially drained site that were not included in the regression evaluation due to preferential flow in these soils. 
fig. 6. Pearson correlation matrix showing the relationships between the subsurface P loss risk scores for (A) the Delaware Phosphorus Site index (De-PSi sub ,) (B) the maryland Phosphorus management Tool (mD-PmT sub ), (c) the maryland Phosphorus management Tool version 2 (mD-PmT2 sub) , and (D) the north carolina Phosphorus loss Assessment Tool (nc-PlAT sub ). 
fig. 9. linear regression analysis showing relationships between soil water extractable P near the water table (WeP WT ) and the subsurface P loss risk scores for (A) the Delaware Phosphorus Site index (De-PSi sub ,) (B) the maryland Phosphorus management Tool (mD-PmT sub ), (c) the maryland Phosphorus management Tool version 2 (mD-PmT2 sub) , and (D) the north carolina Phosphorus loss Assessment Tool (nc-PlAT sub ). 

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Assessing Coastal Plain Risk Indices for Subsurface Phosphorus Loss
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November 2017

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730 Reads

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11 Citations

Journal of Environmental Quality

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Kathryn C. Turner

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J. Thomas Sims

Phosphorus (P) Index evaluations are critical to advancing nutrient management planning in the United States. However, most assessments until now have focused on the risks of P losses in surface runoff. In artificially drained agroecosystems of the Atlantic Coastal Plain, subsurface flow is the predominant mode of P transport, but its representation in most P Indices is often inadequate. We explored methods to evaluate the subsurface P risk routines of five P Indices from Delaware, Maryland (two), Virginia, and North Carolina using available water quality and soils datasets. Relationships between subsurface P risk scores and published dissolved P loads in leachate (Delaware, Maryland, and North Carolina) and ditch drainage (Maryland) were directionally correct and often statistically significant, yet the brevity of the observation periods (weeks to several years) and the limited number of sampling locations precluded a more robust assessment of each P Index. Given the paucity of measured P loss data, we then showed that soil water extractable P concentrations at depths corresponding with the seasonal high water table (WEP WT ) could serve as a realistic proxy for subsurface P losses in ditch drainage. The associations between WEP WT and subsurface P risk ratings reasonably mirrored those obtained with sparser water quality data. As such, WEP WT is seen as a valuable metric that offers interim insight into the directionality of subsurface P risk scores when water quality data are inaccessible. In the long term, improved monitoring and modeling of subsurface P losses clearly should enhance the rigor of future P Index appraisals. Core Ideas We evaluated subsurface P routines of five P Indices in artificially drained soils. Subsurface P ratings mostly accorded with P loads in leachate and ditch drainage. Water extractable P at the seasonal high water table was a proxy for ditch P loss. Useful P Index predictions hinged on accurate depictions of subsurface water flux. Increased monitoring and modeling of subsurface P loss is needed to test P Indices.

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Managing legacy and new sources of phosphorus to reduce leaching in Mid-Atlantic soils

September 2016

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102 Reads

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5 Citations

Application of phosphorus (P) fertilizers and animal manures to P-rich soils due to the historic use of P inputs can lead to greater P losses. In these soils, we need to manage legacy and new inputs of P in a way that they do not lead to P loss. Studies were conducted to (i) determine the effect of soil type on P leaching and (ii) investigate if changes in dairy and poultry diets can lead to lower P in manures and loss when manures are land applied. Earn 2 CEUs in Soil & Water Management by reading this article and taking the quiz at www.certifiedcropadviser.org/ certifications/self-study/799.


Managing legacy and new sources of phosphorus to reduce leaching in Mid-Atlantic soils

September 2016

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24 Reads

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9 Citations

Crops & Soils

Application of phosphorus (P) fertilizers and animal manures to P‐rich soils due to the historic use of P inputs can lead to greater P losses. In these soils, we need to manage legacy and new inputs of P in a way that they do not lead to P loss. Studies were conducted to (i) determine the effect of soil type on P leaching and (ii) investigate if changes in dairy and poultry diets can lead to lower P in manures and loss when manures are land applied. Earn 2 CEUs in Soil & Water Management by reading this article and taking the quiz at www.certifiedcropadviser.org/certifications/self‐study/799 .


Phosphorus Leaching in Soils Amended with Animal Manures Generated from Modified Diets

April 2016

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163 Reads

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20 Citations

Journal of Environmental Quality

New dietary modifications for dairy (reducing P content in feed) and poultry (addition of feed additives such as phytase) aim to reduce P excretion in manures. Our objective was to investigate if dietary changes were effective at reducing P leaching loss on land application of manures. We used 54 undisturbed lysimeters (30 cm diameter, 50 cm deep) collected from three typical mid‐Atlantic soils. Lysimeters received 85 kg total P ha ⁻¹ from fertilizer (superphosphate), dairy manures generated from low‐ or high‐P diets, or broiler litters generated from normal diet or reduced P‐ and phytase‐amended diets. Lysimeters were irrigated with 50 mm of water each week for 9 wk. The major forms of P in the leachate were dissolved (dissolved unreactive P > dissolved reactive P [DRP]) rather than particulate (total particulate P). The higher P solubility (100%) in superphosphate resulted in greater leaching of DRP, whereas the lower P solubility (<30%) in dairy manures or broiler litters resulted in lower DRP leaching from soils. Preferential flow in two soils caused greater DRP leaching; this effect was more pronounced in the superphosphate‐amended than in the manure/litter‐amended lysimeters. The dairy and poultry dietary modification was effective at reducing the amount of P in manures and litters. However, the application of treatments at similar P rate (85 kg ha ⁻¹ ) resulted in the addition of a higher amount of manure (54–66%) in lysimeters that received low‐P dairy manure–amended and phytase‐amended broiler litter, which then controlled P leaching from soils. Core Ideas Dissolved unreactive P was the major form leached from the mid‐Atlantic soils. Existence of preferential flow pathways in soils caused greater P leaching. Soil and manure characteristics controlled P leaching from soils.


Managing Phosphorus Leaching in Mid-Atlantic Soils: Importance of Legacy Sources

December 2015

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180 Reads

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39 Citations

Core Ideas Higher P leaching from P‐saturated mid‐Atlantic soils. Preferential flow caused more P leaching in fine‐textured soils. Matrix flow reduced P leaching from coarse‐textured soils. Use both P saturation ratio and flow pathways to predict the risk of P leaching. Application of phosphorus (P) inputs to soils saturated with legacy P can significantly increase the risk of P leaching and deteriorate water quality. Our objectives were to quantify the effect of soil type and extent of P saturation on P leaching and determine the suitability of a rapid, inexpensive soil P saturation test for use in P leaching risk assessment protocols. We collected 18 undisturbed lysimeters (30‐cm diameter, 50 cm deep), using a tractor‐mounted corer, from three typical mid‐Atlantic soils in Delaware, where P leaching is a concern. The soils were selected on the basis of Mehlich‐3 P saturation ratio (M3‐PSR) of optimum (<0.10) to environmental (>0.15) thresholds. Lysimeters were irrigated with the equivalent of 50 mm of water each week for a total of 16 wk. Concentrations of dissolved reactive P (DRP) and total P in leachate were not significantly different between optimum and environmental M3‐PSR lysimeters before fertilizer application (Weeks 1–8). However, concentrations of DRP and total P significantly increased after fertilizer application at 85 kg P ha ⁻¹ (Weeks 9–16) in the environmental M3‐PSR lysimeters. Among three soils in both M3‐PSR categories, concentrations and loads of P leached were higher from the Matapeake silt loam and Pocomoke sandy loam due to preferential leaching that limited contact of flowing water and P with the soil P‐fixing constituents (Fe, Al, and Ca), while P leaching was lower from Woodstown sandy loam due to matrix flow that resulted in greater interaction of water and P with the soil constituents. These results provide clear evidence of a greater risk of P leaching from P‐saturated soils with preferential flow pathways and show that the M3‐PSR along with information about preferential flow pathways should be used to predict the risk of P leaching.


Manure Management

December 2014

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319 Reads

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22 Citations

Animal manures are a valuable source of nutrients for crops and grasslands. However, global intensification of animal production concentrates manure within smaller areas, creating nutrient hot spots. In contrast, nutrient deficits often develop in areas with limited animal production that could benefit from manure applications. A comprehensive approach to manure application is necessary to maximize agricultural value and minimize environmental and human health effects. Regulations and incentive programs that promote beneficial reuse can enhance productive use of manures and prevent environmental problems. Manure transportation programs and infrastructure are needed to relocate manures from areas of nutrient surplus to deficit areas.


Phosphorus In Drainage Waters Of The Atlantic Coastal Plain.

The Atlantic Coastal Plain region has had a long history of experimental and applied efforts to exclude phosphorus (P) from drainage waters. Early research focusing upon the chemical controls of soil and sediment P has given way to field studies aimed at refining our understanding of hydrologic pathways and sources of P in drainage effluent. To some extent monitoring has helped to prioritize remedial strategies, with farmstead sources serving as principal sources of concern followed by soils of highest P status. Even then, soils of the Atlantic Coastal Plain are far from homogeneous. While drainage systems are generally designed to address regional water tables, textural discontinuities in coastal plain soils often serve to perch water, routing interflow along surface soil horizons and areas of highest P sorption saturation. Targeting surface soil P alone, however, can neglect substantial reserves in the subsoil. Recent trends in converting drainage ditches to subsurface tile drains present new concerns with regard to P leaching, especially following manure application. Integration of nutrient management, drainage management and agronomic management is necessary to overcome the many pathways that can exacerbate P transfers in this region.


Assessing Potential Impacts of a Wastewater Rapid Infiltration Basin System on Groundwater Quality: A Delaware Case Study

March 2013

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76 Reads

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30 Citations

Journal of Environmental Quality

Rapid infiltration basin systems (RIBS) are receiving increased interest for domestic wastewater disposal in rural areas. They rely on natural treatment processes to filter pollutants and use extremely high effluent loading rates, much greater than natural precipitation, applied to a small geographic area instead of disposal to surface water. Concerns exist today that adopting RIBS in areas with shallow groundwater and sandy soils may increase ground and surface water pollution. We conducted a field study of RIBS effects on N and P concentrations in soils and groundwater at Cape Henlopen State Park, Delaware, where a RIBS designed and operated following USEPA guidance has been used for >25 yr. Site and wastewater characteristics (water table of 8 m, Fe- and Al-oxide coatings on soils, organic-rich effluent) were favorable for denitrification and P sorption; however, we found high P saturation, reduced soil P sorption capacity, and significant total P accumulation at depths >1.5 m, factors that could lead to dissolved P leaching. Very low soil inorganic N levels suggest that wastewater N was converted rapidly to NO-N and leached from the RIBS. Extensive groundwater monitoring supported these concerns and showed rapid offsite transport of N and P at concentrations similar to the effluent. Results suggest that high hydraulic loads and preferential flow led to flow velocities that were too large, and contact times between effluent and soils that were too short, for effective N and P attenuation processes. These findings indicate the need for better site characterization and facility designs to reduce and monitor contaminant loss from RIBS in similar settings.


Dissolved Organic Carbon (DOC) in Agricultural Runoff and Its Influence On Exports of Estrogens and Trace Elements.

November 2010

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23 Reads

Dissolved organic carbon (DOC) provides a reactive substrate that can facilitate the transport of organic and inorganic contaminants in runoff. The aromatic fractions of DOC are especially important since contaminants are preferentially sorbed onto these fractions. Agricultural practices such as land application of manure can provide substantial inputs of both DOC as well as associated contaminants to agroecosystems. We explored the exports of DOC, estrogens and trace elements in surface runoff from agricultural plots receiving poultry litter. The study was conducted on agricultural soils of the coastal plain in Delaware. Estrogens included free forms: estrone, 17β–estradiol, and estriol; and their glucuronide and sulfate conjugates. Trace elements studied were arsenic, copper, and zinc. Litter treatments included raw litter, pelletized litter and control (no-litter). Treatment plots were 5m wide and 12m long with reduced and no–tillage management practices. The aromatic content of DOC was characterized using specific ultra violet absorbance (SUVA). Surface runoff samples were collected for seven natural storm events over the summer (April-July, 2008). Flow-weighted concentrations of DOC and SUVA from plots receiving litter were significantly (p≤0.10) greater than the control plots. Plots in reduced tillage with raw litter yielded higher DOC concentrations and SUVA values (more aromatic) compared to plots with the pelletized litter. No significant differences (p≤0.10) in DOC and SUVA were observed for litter treatments in no-tillage. Mass exports of estrogens and the trace elements were positively and significantly (p≤0.10) correlated with DOC and SUVA, indicating that DOC, especially its aromatic fractions, played significant role in the exports of these contaminants.


FIGURE 1. Temperature profiles of compost trial 1 (start date was 23 October 2008) and compost trial 2 (start date was 5 May 2009).
Composting process particulars
Fate of the viral genomes during composting processes
Fate of Human Enteric Viruses during Dairy Manure-Based Composting

August 2010

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78 Reads

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12 Citations

Journal of Food Protection

Murine norovirus 1 (MNV-1), Aichi virus (AiV), and human adenovirus 41 (Ad41) were seeded in dairy manure and composted for 60 days, and both the stability of virus genomes and infectious viruses were evaluated. For compost started in late fall, pile temperature reached approximately 54.5 degrees C on day 1 and remained between 55 and 60 degrees C for 3 days. For viral genomes, AiV had an approximate 1.4-log loss of viral genome after 1 day and more than a 3.1-log loss after 2 days; while for MNV-1, there was a roughly 0.6-log reduction on day 1 and a more than 4-log reduction after 5 days. For compost started in late spring, the center temperature reached about 70 degrees C on day 1 and remained warmer than 65 degrees C for 3 days. The MNV-1 viral genome level was below the detection limit (ca. 3.4 log reverse transcriptase and quantitative PCR unit per g) after 1 day. Compared with RNA viruses, the Ad41 DNA genome was more stable in compost started in late spring; there was no reduction in DNA after 1 day, and ca. a 2.1-log loss at 5 and 7 days. For viral infectivity, the AiV infectious concentration was below the detection limit (about 2.8 log tissue culture infectious dose assay per g) after day 1 for both trials 1 and 2, and for Ad41, there was a greater than 4-log reduction of infectivity after 1 day for trial 2. Overall, temperature is a critical factor, which affects the survival of viruses in compost, and the fate of the viral genome in the generated heat is virus dependent as well. For U.S. Environmental Protection Agency Class A compost, current compost regulations require maintaining temperatures between 55 and 70 degrees C for at least for 3 days for a static aerated-pile system. This study indicated that these temperature conditions could effectively inactivate MNV-1, AiV, and Ad41.


Citations (88)


... Soil residual NH 4 -N and NO 3 -N At the end of the soil column study, significantly higher NO 3 -N and NH 4 -N at the bottom of the column indicated the downward movement of nitrogen (Panday et al., 2020;Pierzynski et al., 2005). Previous studies have shown that 25.4 mm of rainfall or irrigation can transport nitrate to a depth of 150-200 mm in a loamy sand soil (Endelman et al., 1974). ...

Reference:

Nitrogen source regulates soil nitrification and nitrogen losses more than nitrification inhibitor and herbicide: A laboratory evaluation
Soils and Environmental Quality
  • Citing Book
  • May 2005

... Incorporating separate subsurface and surface discharge components into MNPI calculations may further improve results. Several state P indices include explicit subsurface components of P loss (particularly states along the US East Coast and Eastern Corn Belt Shober et al. [2017]). A wealth of literature documents that, in addition to soil-test P, additional factors such as P saturation, P application methods, surface runoff, and subsurface drainage all influence P loss (Sharpley & Withers, 1994;Sharpley et al., 2012). ...

Assessing Coastal Plain Risk Indices for Subsurface Phosphorus Loss

Journal of Environmental Quality

... Interpretation of these results may be impacted by soil to water ratio and other factors (Sharpley, 1983). Several studies have also reported high P leaching losses in soils saturated with P (Pautler and sims, 2000;Toor and Sims, 2016). When PSR is correlated with WEP, changepoints may be determined for environmental P losses . ...

Managing legacy and new sources of phosphorus to reduce leaching in Mid-Atlantic soils
  • Citing Article
  • September 2016

Crops & Soils

... Phosphorus (P) fertilization effectively enhances soil fertility and ensures crop yield (Gilbert 2009). When P fertilizer is not reasonably applied, however, superabundant P surplus in the soil can cause P transport, aggravating aquatic environmental pollution (i.e., eutrophication) (King et al. 2015;Toor and Sims 2016). Surface runoff and leaching, which commonly occur during natural rainfall events, are the two major hydrological routes for the transport of P from agroecosystems to aquatic ecosystems. ...

Managing legacy and new sources of phosphorus to reduce leaching in Mid-Atlantic soils
  • Citing Article
  • September 2016

... Previously, many studies concluded that soil had strong adsorption and fixation effect on P, which could result in the immobility of P in soil, so that total P accumulated significantly in the soil surface layer (Gburek et al. 2005;Toor and Sims 2016). However, the results of this study showed that the vertical migration of P in the Entisol profile was obvious, which might be due to the excessive input of P from organic manure sources, which resulted in the P in the soil surface layer exceeding the demand of plants and the adsorption capacity of the soil (Oliveira Filho et al. 2020;Qin et al. 2020). ...

Phosphorus Leaching in Soils Amended with Animal Manures Generated from Modified Diets
  • Citing Article
  • April 2016

Journal of Environmental Quality

... The main factors determining the rate of lake degradation are the supply of nutrients and the morphometric features of the lake basin. One of the most serious sources of eutrophication of surface waters is agriculture [5][6][7][8]. The catchments, transformed by cultivation and breeding, become efficient suppliers of biogenic and organic matter to the lakes [9]. ...

The Return of the Phosphorus Paradigm: Agricultural Phosphorus and Eutrophication
  • Citing Chapter
  • January 2005

... Nearly 20 yr ago, Lander et al. (1998) analyzed budgets of nutrients available in livestock manure relative to crop growth requirements on a county basis across the United States. This provided valuable insight and early warnings of nutrient imbalances that were occurring within productive, yet spatially disconnected livestock and crop production systems (Lanyon, 2005;Maguire et al., 2005). When applied to landscape data, these types of budgets have been used to produce widely used risk vulnerability maps for nutrient runoff and leaching from agricultural lands receiving manures, helping to target nutrient management and conservation programs (Kellogg, 2001). ...

Phosphorus, Animal Nutrition, and Feeding: Overview
  • Citing Chapter
  • January 2005

... The advantage of using NPs rather than other fertilizers, especially through foliar application, is that direct interaction with soil systems is avoided, eliminating potential ecological risks [37,100]. This may be due to the characteristics of andosol soil, which has a large presence of allophane clays that could complex the ions, reducing their mobility and incorporation into the plant through the roots [103]. In this sense, engineered nanoparticles of Ag and Cu could increase Pi retention in soil size fractions, which can decrease soil fertility [104]. ...

Phosphorus Dynamics in Tropical Soils
  • Citing Chapter
  • January 2005

... Significant differences were found among clones in nitrogen and phosphorus retention, but the relation between plant size and nutrient accumulation was not straightforward due to clone variability in tissue concentrations. It is important to consider plants' nutrient accumulation in wetlands, where nitrogen-inorganic forms in the soil can easily lixiviate, and available phosphorus is usually low due to edaphic factors (Reddy et al. 2005, Hantush et al. 2013, Spera et al. 2020. Furthermore, variability in nutrient cycling could have a relevant impact since soil properties determine global and regional patterns of soil microbial communities (Kang et al. 2021). ...

Biogeochemistry of Phosphorus in Wetlands
  • Citing Chapter
  • January 2005

... High yields of high-quality fruits are impossible without supplying plants with the necessary nutrition, including phosphorus. The value of phosphorus needed for plant organisms, including apple trees, has been determined in many scientific works (Larsen, 1967;Hanlon et al., 2005). But less attention is paid to phosphorus fertilization problems than to nitrogen and potassium nutrition because there is often no close relationship between phosphorus application and yield increase (Boyton and Oberly, 1966). ...

Phosphorus Nutrition of Ve getable Crops and Fruits
  • Citing Chapter
  • January 2005