J. M. Martin’s research while affiliated with Montana State University and other places

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Publications (69)


Graphical representation of polymorphism between Grain Number Increase 1 (GNI‐A1) alleles. The ancestral allele of GNI‐A1 encodes an asparagine (N) at the 105th codon, while missense alleles GNI‐A1‐105Y encodes a tyrosine, and GNI‐A1‐105K encodes a lysine.
Representative spikes from the family Lanning/Egan 68, the heterogeneous inbred family (HIF) family with the largest average difference in spike size between Grain Number Increase 1 (GNI‐A1) 105N and 105K allele classes. Primary spikes from different allele classes did not vary in spikelets per spike but did vary in seeds per spikelet resulting in an overall increase in seeds per primary spike in lines containing the GNI‐A1‐105K allele.
The Grain Number Increase 1 alleles GNI‐A1‐105Y and ‐105K increase grain number in spring wheat
  • Article
  • Full-text available

May 2024

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58 Reads

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1 Citation

C. O. Hale

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B. J. Tillett

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J. M. Martin

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[...]

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M. J. Giroux

Wheat (Triticum aestivum L.) has inflorescences made up of multiple spikelets arranged along a central rachis, with each spikelet producing between one and four grains. The Grain Number Increase 1 (GNI‐A1) gene wheat directly influences grain number per spikelet and grain size. Three naturally occurring alleles have been described previously: GNI‐A1‐105N, 105Y, and 105K. This project's goal was to characterize the impact of these alleles within hard red spring wheat cultivars in Montana, where each of the alleles is common. The 105N allele and the 105K allele were compared through analysis of an F5 Vida by Spring‐Yellowstone recombinant inbred line (RIL) population, and with near isogenic lines (NILs) derived from the same population. The 105N allele and the 105Y allele were compared with NILs derived from an F4 Lanning by Egan RIL population. We analyzed the impact of each of the three alleles and compared their effects on inflorescence architecture, grain size, grain yield, grain quality, and milling quality under Bozeman, MT, field conditions. Data show that either loss‐of‐function alleles (105Y and 105K) increased grain number per spikelet by 5% when compared to the more functional allele (105N) across all years and environments tested. Overall grain size was not significantly reduced and there was also not a significant increase in overall grain yield.

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Daily climatic data including precipitation (cm), average temperature (°C), and max temperature (°C) from April thru August for the following test locations: (a) 2013 Bozeman, MT, rainfed; (b) 2013 Bozeman, MT, irrigated; (c) 2014 Bozeman, MT, rainfed; (d) 2014 Huntley, MT. rainfed; and (e) 2014 Sidney, MT, irrigated. Planting date, average recombinant inbreed lines (RIL) heading date and irrigation date are also reported for each location
Genetic analysis of stay‐green, yield, and agronomic traits in spring wheat

November 2020

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45 Reads

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13 Citations

Hard red spring wheat (Triticum aestivum L.) grown in rainfed environments in the northern Great Plains of North America frequently encounter drought and heat stress during grain‐fill, thus reducing yield. Delayed leaf senescence after heading, known as the stay‐green trait, has been found to help spring wheat tolerate drought and heat stress during grain‐fill. To better understand how the stay‐green trait relates to expression of other agronomic traits, data was analyzed from a recombinant inbred line (RIL) population derived from a ‘Vida’/MTHW0202 cross grown in rainfed and irrigated environments. The genetic architecture controlling traits measured in this study were also examined. Results found the stay‐green trait was significantly correlated to overall yield (P < .001, r = .37) in rain‐fed environments, but was not significantly correlated to yield (P = .26, r = .09) in irrigated environments. Three quantitative trait loci (QTL) located on chromosomes 2D, 4A, and 4D were associated with the stay‐green trait. The 4A stay‐green QTL, previously designated QGfd.mst‐4A, was collocated with QTL for seed number per head, thousand kernel weight, and heading date. The 4D stay‐green QTL overlaps the Rht‐D1 plant height gene, and the allele prolonging the stay‐green period co‐segregates with the wild‐type (tall) Rht‐D1a allele. Results from this study provide a better understanding of the relationship between stay‐green and agronomic traits in rainfed vs. irrigated environments. Additionally, understanding the genetic architecture controlling stay‐green and agronomic traits will aid in selecting future drought‐tolerant spring wheat varieties.


Correction to: Genetic characterization and expression analysis of wheat (Triticum aestivum) line 07OR1074 exhibiting very low polyphenol oxidase (PPO) activity

Theoretical and Applied Genetics

The above-mentioned article was published in 2015 with an error in the reverse primer sequence for the PPOA2d1074 marker, which made amplification difficult. The reverse primer was missing a thymine nucleotide at the thirteenth position (GCGGTGCTTCACTTGGT).


Tiller number (a), leaf length (b) and chlorophyll (c) throughout development of rice with native (WT) or increased expression of AGPase in leaves and seeds (LS) under four soil nutrition treatments in which concentration of all nutrients varied linearly to N. Black and grey bars represent WT and LS values respectively. Replicated trials were combined to give n = 12–17 for each genotype within each treatment. Leaf length corresponds to the uppermost, fully expanded leaf at each growth stage. SPAD chlorophyll values represent the mean of three random measurements at 1 month, and three measurements on the uppermost flag leaf at anthesis and maturity. *, ** Indicates significant difference between LS and WT at p-value ≤ 0.05, and 0.01 respectively using one-tailed, equal variance t tests with the hypothesis that LS plant growth would be responsive to nutrient availability
Above ground biomass (a), productive panicle number (b) seed number (c) and individual seed weight (d) of rice with native (WT) or increased expression of AGPase in leaves and seeds (LS) were examined under four nutrition treatments in which all nutrient concentrations varied in accordance to N. Black and grey bars represent WT and LS values respectively. Replicated trials were combined to give n = 12–17 for each genotype within each treatment. *,**Indicates significant difference between LS and WT at p-value ≤ 0.05, and 0.01 respectively using one-tailed, equal variance t tests with the hypothesis that LS plant growth would be responsive to nutrient availability
Starch isolated from 14 DAF flag leaves at the end of the photoperiod from rice plants with native levels of AGPase expression (WT) or increased AGPase expression in leaves and seeds (LS) grown under four nutrition treatments with n = 9. Concentration of all nutrients varied in accordance to N for all treatments. *, **Indicates significant difference between LS and WT at p-value < 0.05 and 0.01 respectively using one-tailed, equal variance t tests with the hypothesis that expression of the leaf and seed AGPase transgene would increase starch in flag leaves relative to the WT
Percentage crude protein in flag leaves of rice with native (WT) or increased expression of AGPase in leaves and seeds (LS) in response to four nutrition treatments in which all nutrient concentrations varied linearly to N. Total nitrogen was measured using a LECO FP-528 combustion method nitrogen analyzer and converted to percent crude protein by multiplying by a factor of 6.25. *, **Represent significance at p-value ≤ 0.05 and 0.01 respectively using one-tailed, equal variance t tests with the hypothesis that LS tissue would have decreased nitrogen content compared to WT flag leaves
Net change in metabolism in flag leaves harvested at 14 days after flowering (DAF) at the end of the photoperiod in rice plants with increased leaf and seed AGPase expression (LS) compared to wild type (WT) in response to nutrient level. Concentration of nutrients within each treatment changed linearly with N. LS/WT Ratio indicates percentage of metabolites that were significantly up or down-regulated between genotypes within each metabolic class with a sample size of n = 5. Metabolites were identified via a GC-TOF MS–MS untargeted metabolomic study with a total of 116 identified compounds. The number of metabolites identified within each class are as follows: 25 amino acids and derivatives, 13 nitrogen containing compounds, 28 carbohydrates, 27 organic acids, and 8 phenolic compounds
Yield increases resulting from AGPase overexpression in rice are reliant on plant nutritional status

November 2019

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94 Reads

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13 Citations

Plant Growth Regulation

Upregulation of starch biosynthesis in either source or sink tissue has been shown to increase yield under non-limiting resources. Previously we demonstrated that overexpression of AGPase in both leaf and seed tissue results in greater yield increases than overexpression in a single tissue alone. This study examines the link between starch biosynthesis, plant yield, and plant nutrition. Rice overexpressing AGPase in leaves and seeds (LS) was grown under four nutrition treatments and compared to wild type (WT) sister plants. In this study yield differences were most pronounced at low to mid nutrition levels. Greatest differences were observed at 0.075 g N L⁻¹, where biomass and seed weight per plant were increased by 45% in LS plants. Alternatively leaf starch trended higher at mid to high nutrition, but was only significant at 0.1 g N L⁻¹, where starch was 2.59 × higher compared to the WT. This was in contrast with photosynthetic rates. Rates were unchanged between LS and WT plants at 0.05 g N L⁻¹ nutrition, but significantly lower by 25% in LS plants at 0.1 g N L⁻¹ and 0.2 g N L⁻¹ nutrition. This study provides further insight into the complex interactions between starch biosynthesis, plant metabolism, and plant growth.


Maturity Traits Related to Climate Adaptation Affect Quality Characteristics in Hard Red Spring Wheat

September 2018

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59 Reads

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4 Citations

Maturity traits such as days to heading and days to physiological maturity have a large impact on agronomic characteristics of wheat (Triticum aestivum L.) cultivars grown in specific environments. Extended green leaf and green glume duration after heading in hard red spring wheat have been shown to result in longer grain-fill duration, increased kernel weight, and higher grain yield in dry environments. The genetic relationship between maturity traits, seed quality, and functional bread-making characteristics was investigated for three sets of recombinant inbred lines derived from crosses between hard red spring wheat parents. Early heading date was correlated with increased seed quality as indicated by test weight and kernel weight in all three genetic populations. Days to heading was not consistently correlated with functional quality related to bread-baking. Longer green glume and green leaf duration after heading were typically positively related to seed quality traits including test weight and kernel weight in the three populations. However, increased green leaf and green glume duration after heading were often negatively correlated with functional quality parameters related to bread baking. Our results suggest that selection for long green leaf or green glume duration after heading to stabilize grain yield in a warmer climate may also result in a decrease in bread-making potential. © Crop Science Society of America | 5585 Guilford Rd., Madison, WI 53711 USA All rights reserved.


Marker effect plots for QSnh.mst‐4A sequence‐based MT17.1.141 phenotypic allele means for Choteau and S‐Yellowstone for several agronomic and yield component traits. The vertical dashed lines represent the SE for the mean of each allele. GLADH, green leaf duration after heading.
Evaluation of a QTL Mapping Population Composed of Hard Red Spring and Winter Wheat Alleles Using Various Marker Platforms

March 2018

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82 Reads

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10 Citations

Hard red spring and winter wheat (Triticum aestivum L.) differ due to the need for vernalization to induce flowering in winter wheat, adaptation to different environments, and the requirement for higher grain protein content for end‐use quality in spring wheat. Genetic studies on spring × winter wheat crosses to identify beneficial alleles are difficult due to segregation of vernalization (Vrn) genes. For this experiment, ‘Yellowstone’, a widely grown winter wheat cultivar, was converted to the spring habit through marker‐assisted backcrossing of Vrn‐A1 and is now referred to as ‘S‐Yellowstone’. S‐Yellowstone was crossed to the spring wheat cultivar ‘Choteau’ to produce a population of 95 spring habit recombinant inbred lines (RILs). The RILs and parents were evaluated in field trials for 2 yr where S‐Yellowstone had higher grain yield and lower grain protein than Choteau. A quantitative trait locus (QTL) on chromosome 4A had pleiotropic effects on several traits. The S‐Yellowstone allele at this locus resulted in more seeds per head, accounting for 59.5% of the variation across all environments. The QTL was designated QSnh.mst‐4A. However, the S‐Yellowstone QSnh.mst‐4A allele also resulted in lower grain protein across all environments. Results suggest that the favorable QSnh.mst‐4A allele for seed number per head identified in the winter wheat parent might be useful for increasing yield in spring wheat, but consequences of the negative pleiotropic effects on grain protein content might be significant.


Table 4 . Impact of alternative alleles at QTn.mst-6B in five pairs of near-isogenic lines on yield and yield components based on competition trials in 2013. 
Impact of a Quantitative Trait Locus for Tiller Number on Plasticity of Agronomic Traits in Spring Wheat

March 2016

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215 Reads

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21 Citations

Variability of production environments challenges wheat (Triticum aestivum L.) breeders to develop genotypes with the potential to perform well under different levels of resource availability. An important trait that may provide plasticity to wheat is productive tiller number (PTN). This paper reports two studies. The first study tested the impact of a quantitative trait locus (QTL) for PTN on yield and other traits in a set of near-isogenic lines (NILs) grown over nine environments in the Pacific Northwest. Results showed that an allele for high tiller number at QTn.mst-6B enhanced early tiller (ETN) formation regardless of environments. Under favorable conditions, the large number of early tillers translated into a capacity for high PTN. Seed weight and seed diameter were negatively affected by the QTn.mst-6B high tiller allele. The second study assessed the impact of QTn. mst-6B under different competition and soil resource levels in three trials in Bozeman, MT. Three treatments were imposed on NIL pairs in replicated experiments: (i) bordered rows that limited soil resources to each NIL, (ii) nonbordered rows with less competition that provided more soil resources to each NIL, and (iii) space-planted plants with limited competition for soil resources. Results complemented those found in the multienvironment trials, as the high tiller allele caused high PTN at low competition levels when soil resources were more abundant. Increased yield as a result of the high tiller allele at QTn.mst-6B was only detectable in the highest resource treatment and environment. © Crop Science Society of America | 5585 Guilford Rd., Madison, WI 53711 USA All rights reserved.



Impact of the D genome and quantitative trait loci on quantitative traits in a spring durum by spring bread wheat cross

June 2015

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66 Reads

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24 Citations

Theoretical and Applied Genetics

Key message The impact of the D genome and QTL in the A and B genomes on agronomic performance of hexaploid wheat and tetraploid durum was determined using novel recombinant inbred line populations derived from interploid crosses. Abstract Genetic differences between common hexaploid (6X) bread wheat (Triticum aestivum, 2n = 6x = 42, genome, AABBDD) and tetraploid (4X) durum wheat (T. turgidum subsp. durum, 2n = 4x = 28, genome, AABB) may exist due to effects of the D genome and allelic differences at loci in the A and B genomes. Previous work allowed identification of a 6X by 4X cross combination that resulted in a large number of fertile recombinant progeny at both ploidy levels. In this study, interspecific recombinant inbred line populations at both 4X and 6X ploidy with 88 and 117 individuals, respectively, were developed from a cross between Choteau spring wheat (6X) and Mountrail durum wheat (4X). The presence of the D genome in the 6X population resulted in increased yield, tiller number, kernel weight, and kernel size, as well as a decrease in stem solidness, test weight and seed per spike. Similar results were found with a second RIL population containing 152 lines from 18 additional 6X by 4X crosses. Several QTL for agronomic and quality traits were identified in both the 4X and 6X populations. Although negatively impacted by the lack of the D genome, kernel weight in Mountrail (4X) was higher than Choteau (6X) due to positive alleles from Mountrail on chromosomes 3B and 7A. These and other favorable alleles may be useful for introgression between ploidy levels.


Citations (62)


... This is likely in part to it containing a rare allele, for Montana durum wheat, of the Grain Number Increase (GNI) gene that confers larger seed size (Tillett et al., 2022). Previous studies have demonstrated that the GNI-105N allele confers larger seed size versus the GNI-105Y allele in spring wheat populations Hale et al., 2024;Sakuma et al., 2019). (Hale et al., 2024). ...

Reference:

Registration of ‘MT Blackbeard’ and ‘MT Raska’ durum wheat
The Grain Number Increase 1 alleles GNI‐A1‐105Y and ‐105K increase grain number in spring wheat

... In Poland, flours are classified into and date of N application [8,18,51,52]. The color of flour is negatively correlated with the ash content, and it is also weakly influenced by N fertilization [8,18,[53][54][55][56][57][58][59]. An increase in the N rate increases the protein content of flour [60][61][62]. ...

Influence of Genotype, Environment, and Nitrogen Management on Spring Wheat Quality

... In recent years, UAV-based high-throughput imaging phenotyping has been widely used to quantify crop growth traits and physiological properties, such as plant height [8], canopy area [9], biomass [10], canopy temperature [11], chlorophyll content [12], leaf senescence [13], stay-green [14], quality and yield [15], and abiotic stress [16,17]. Physiological studies have indicated that leaf stay-green is closely related to wheat heat-resistance [18][19][20]. Soil Plant Analysis Development (SPAD), known as an indicator of leaf greenness, reflects the relative chlorophyll content in leaf blades [21]. Although many spectral indices based on spectral data have been currently developed for monitoring SPAD, the use of UAV multispectral data to characterize the stay-greenness properties of crop leaves and applied them to screen heat-tolerant varieties is still relatively limited in current research [22][23][24][25][26]. Therefore, in this study, we proposed to use SPAD and SPAD dropping rate (SDR) as heat-tolerant screening traits and construct a classification model based on machine learning for screening different heat-tolerant types of wheat. ...

Genetic analysis of stay‐green, yield, and agronomic traits in spring wheat

... An Arabidopsis study found that AtWRKY75 is a positive regulator of flowering initiation and binds to the FT promoter [62]. There is also evidence that WRKY transcription factors regulate leaf starch metabolism [29,63]. ...

Yield increases resulting from AGPase overexpression in rice are reliant on plant nutritional status

Plant Growth Regulation

... Plants in HS disturbed the grain amylose to amylopectin ratio by decreasing amylose (Schittenhelm et al., 2020). HS has shown adverse effects on photo-assimilate production and its translocation to sink (Blake et al., 2018). Damage was noted on tissue dehydration with limited assimilate production in HS (Balla et al., 2019). ...

Maturity Traits Related to Climate Adaptation Affect Quality Characteristics in Hard Red Spring Wheat
  • Citing Article
  • September 2018

... The RIL population in this study was derived from a cross between cultivars hard red spring Vida (PI642366) and a spring habit version of the hard red winter variety Yellowstone (PI 643428). The spring habit Yellowstone (PI 643428) was created by marker-assisted backcrossing of the spring habit allele of the VRN-A1 gene into Yellowstone (Bruckner et al., 2007;Cook et al., 2018;Lanning et al., 2006). Vida contains the 105K allele and Spring-Yellowstone contains the 105N allele. ...

Evaluation of a QTL Mapping Population Composed of Hard Red Spring and Winter Wheat Alleles Using Various Marker Platforms

... Inactivation of the susceptibility gene Mildew Locus O (MLO) increases durable and broad-spectrum resistance to powdery mildew in plants, but it is also accompanied by growth defects and yield loss [21,22]. The WSMV resistance gene 1 (Wsm1) enhances wheat resistance to wheat streak mosaic virus, but the average yield decreases by 21% [23]. However, we found that AtTLP1b could synergistically negatively regulate seed oil content and resistance to S. sclerotiorum in Arabidopsis. ...

Field Evaluation of Transgenic and Classical Sources of Wheat streak mosaic virus Resistance

... Wheat streak mosaic virus (WSMV) causes streak mosaic disease in wheat (Triticum aestivum L.) and has been reported in many regions around the world (Fahim et al., 2011;Sharp et al., 2002). The WSMV is transmitted by wheat curl mites (WCM: Aceria tosichella Keifer) (Navia et al., 2013) and wheat is the preferred host for both WCM and WSMV ( Baleya et al., 2001;Murray & Brennan, 2009). WSMV-infected wheat plants develop yellow leaf streaks during early infection and the symptom could spread to the entire leaf if the virus is not effectively controlled. ...

Agronomic and end-use qualities of Wheat streak mosaic virus resistant spring wheat
  • Citing Article
  • November 2001

Crop Science

... While the role of weeds in decreasing yields due to direct competitive interactions has been widely studied (Zimdahl, 2004), their impact on crops through increased over-winter mortality, that is, winterkill, has received little attention. Winterkill in autumn-sown cereals can result in decreased crop yield (Holen et al., 2001), reduced competitive ability against weeds (O'Donovan et al., 1999; Blackshaw et al., 2000; Lemerle et al., 2004; Beres et al., 2010) and complete loss of the crop (Murray et al., 1999). The causes of winterkill vary depending on the amount of snow cover in crop fields. ...

Response of winter wheat to simulated stand reduction
  • Citing Conference Paper
  • March 2001

Agronomy Journal

... We observed gene expression patterns consistent with altered cell division and reduced responses to heat stress due to the BR application. Plant growth conditions, brassinosteroid and stress treatments, and morphological data collection Three hard red spring wheat varieties Vida, Hi-Line, and MTHW0202 were studied for responses to brassinosteroid treatments, due to varied developmental patterns: Vida is high tillering (34), MTHW0202 is early maturing (unpublished), and Hi-Line is photoperiod insensitive (35). For all experiments, ve seeds were planted per 20 cm diameter pot in soil (Sunshine Mix #1, Sungro Horticulture) and grown in a growth chamber in a complete random design. ...

Impact of a Quantitative Trait Locus for Tiller Number on Plasticity of Agronomic Traits in Spring Wheat