J. Jed Brown’s research while affiliated with Qatar University and other places

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Publications (9)


The effectiveness of fully protected areas in promoting abundance of sharks and rays
Effectiveness of fully protected areas in promoting abundance of sharks and rays, based on log-ratio effect sizes inside/outside of fully protected areas (n = 66). Green dots represent positive results where the 95% confidence interval of the effect size does not overlap zero and yellow a null result. 75% confidence intervals are also displayed, and the superscript H indicates that significant heterogeneity (* < 0.05, *** < 0.001) was associated with the effect size, with n representing the number of fully protected areas used to calculate the overall effect size.
The effectiveness of fully protected areas in promoting abundance of sharks
Green dots represent positive results where the 95% confidence interval of the effect size does not overlap zero and yellow where they do. Effect sizes were weighed based on the inverse of the variance with smaller points having a lower weighting.
Effectiveness of fully protected areas in promoting shark and ray abundance
Effectiveness in promoting abundance of wide-ranging and reef-associated sharks (left), the most abundant species within the reef-associated group (middle), and small and large rays (right) based on log-ratio effect sizes inside/outside of fully protected areas. Green dots represent results where the 95% CI (upper and lower horizontal bounds) of the effect size does not overlap zero and yellow dots represent a null result overlapping zero. Also displayed are 75% CIs (bold portion of the vertical bar). For each category, the number of fully protected areas used to calculate the overall effect size is shown (n); an H indicates significant heterogeneity (*<0.05, ***<0.001) associated with the effect size.
Effectiveness of fully protected areas and fisheries management for shark conservation
Green points represent a fully protected area with a greater abundance of sharks; yellow represents a protected area where 95% CIs overlap zero. Multiple fully protected areas were sampled at some locations, hence point displacement was used to distinguish between areas in clusters. Locations where fisheries management strategies for sharks were deemed effective are shown by blue ticks and ineffective with red crosses (see ‘Fisheries management and fully protected areas’ and Methods). Shark sanctuaries (a nationwide ban on shark fishing) and remote locations (total gravity of human impacts =0) were excluded from the fisheries management analysis. For individual effect size results and fisheries management classifications by location, see Extended Data Fig. 2 and Supplementary Table 1.
Relative importance of explanatory variables in predicting the effectiveness of fully protected areas in protecting reef-associated sharks
Variable scores are based on summed AIC weights (see Methods). The four most important variables that were also included in top models (see Methods) were plotted to demonstrate the direction and magnitude of their relationship with fully protected area effect sizes (n = 66). Shading indicates the standard error confidence bands, and error bars show both 95% and 75% CIs.

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Directed conservation of the world’s reef sharks and rays
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May 2024

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1,046 Reads

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12 Citations

Nature Ecology & Evolution

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Demian D. Chapman

Many shark populations are in decline around the world, with severe ecological and economic consequences. Fisheries management and marine protected areas (MPAs) have both been heralded as solutions. However, the effectiveness of MPAs alone is questionable, particularly for globally threatened sharks and rays (‘elasmobranchs’), with little known about how fisheries management and MPAs interact to conserve these species. Here we use a dedicated global survey of coral reef elasmobranchs to assess 66 fully protected areas embedded within a range of fisheries management regimes across 36 countries. We show that conservation benefits were primarily for reef-associated sharks, which were twice as abundant in fully protected areas compared with areas open to fishing. Conservation benefits were greatest in large protected areas that incorporate distinct reefs. However, the same benefits were not evident for rays or wide-ranging sharks that are both economically and ecologically important while also threatened with extinction. We show that conservation benefits from fully protected areas are close to doubled when embedded within areas of effective fisheries management, highlighting the importance of a mixed management approach of both effective fisheries management and well-designed fully protected areas to conserve tropical elasmobranch assemblages globally.

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Widespread diversity deficits of coral reef sharks and rays

June 2023

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948 Reads

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21 Citations

Science

A global survey of coral reefs reveals that overfishing is driving resident shark species toward extinction, causing diversity deficits in reef elasmobranch (shark and ray) assemblages. Our species level analysis revealed global declines of 60 to 73% for five common resident reef shark species and that individual shark species were not detected at 34 to 47% of surveyed reefs. As reefs become more shark-depleted, rays begin to dominate assemblages. Shark-dominated assemblages persist in wealthy nations with strong governance and in highly protected areas, whereas poverty, weak governance, and a lack of shark management are associated with depauperate assemblages mainly composed of rays. Without action to address these diversity deficits, loss of ecological function and ecosystem services will increasingly affect human communities.



Fig. 14.1 Clustering for six S. bigelovii populations (LA, GA, MI, FL2, SP, FL1) irrigated with brackish groundwater (GW) and seawater (SW) for all parameters studied
List of abbreviations for the traits that were studied for S. bigelovii plants
Seed yield, biomass, ash, and root parameters of six S. bigelovii populations treated with brackish groundwater (GW) and seawater (SW). Values (mean AE s.e.) followed by dissimilar letter imply statistically significant difference ( p 0.01 and p < 0.05)
Pearson correlation analysis conducted for all growth attributes for the six S. bigelovii populations. Only the statistically significant coefficients are presented ( p < 0.01 and p < 0.05). Values above diagonal (gray color) refer to seawater (SW) and below diagonal to brackish groundwater (GW) treatment
Crop Potential of Six Salicornia bigelovii Populations Under Two Salinity Water Treatments Cultivated in a Desert Environment: A Field Study

September 2020

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139 Reads

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7 Citations

Halophyte farming seems to be a promising alternative to conventional agriculture under marginal environments, since it does not compete with dwindling fresh water and land resources. For this purpose halophytic species need to be domesticated to serve as a “crop” plant. Field evaluation of six Salicornia bigelovii Torr. populations (LA, GA, MI, FL2, SP, FL1) was conducted in 2012–2013 in the United Arab Emirates applying two irrigation treatments: brackish groundwater (20 dSm−1) and seawater (55 dSm−1) to examine their growth performance taking into account 24 plant characteristics, biomass, seed yield parameters, and growth stages attributes. The experimental results indicated that S. bigelovii populations were highly variable for the majority of traits. Irrigation with seawater negatively influenced the agronomic performance of S. bigelovii populations compared to groundwater. SP, MI, and GA populations received higher values for almost all characteristics observed, as compared to LA, FL1, and FL2 populations especially under groundwater treatment. Seawater extended the duration of growth cycle for all Salicornia populations compared to groundwater irrigation. The outcomes clearly indicated that the salinity level had an impact on S. bigelovii populations’ performance and yield potential. It is suggested that screening should be evaluated under both optimum and full-strength saline water to optimize biomass and seed production. The existing genotypes could be further improved through breeding taking into account spike characteristics and days to flowering as revealed by path analysis. Combining suitable germplasm with proper agronomic practices, there is a big potential to develop this halophytic species plantations for economically viable production systems in hot and dry regions.


Global status and conservation potential of reef sharks

July 2020

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2,994 Reads

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273 Citations

Nature

Decades of overexploitation have devastated shark populations, leaving considerable doubt as to their ecological status1,2. Yet much of what is known about sharks has been inferred from catch records in industrial fisheries, whereas far less information is available about sharks that live in coastal habitats³. Here we address this knowledge gap using data from more than 15,000 standardized baited remote underwater video stations that were deployed on 371 reefs in 58 nations to estimate the conservation status of reef sharks globally. Our results reveal the profound impact that fishing has had on reef shark populations: we observed no sharks on almost 20% of the surveyed reefs. Reef sharks were almost completely absent from reefs in several nations, and shark depletion was strongly related to socio-economic conditions such as the size and proximity of the nearest market, poor governance and the density of the human population. However, opportunities for the conservation of reef sharks remain: shark sanctuaries, closed areas, catch limits and an absence of gillnets and longlines were associated with a substantially higher relative abundance of reef sharks. These results reveal several policy pathways for the restoration and management of reef shark populations, from direct top-down management of fishing to indirect improvement of governance conditions. Reef shark populations will only have a high chance of recovery by engaging key socio-economic aspects of tropical fisheries.


Considerations for Producing Bioenergy from Halophyte Feedstocks

April 2019

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94 Reads

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10 Citations

With the growing criticisms of using arable land and edible crops to produce first-generation biofuels instead of food for humans, there is an increasing interest in using marginal lands and water sources to grow biofuel feedstocks to produce second-generation biofuels. One possible way forward would be to use seawater or other high-salinity water to grow salt-tolerant plants (halophytes). Halophytes have the potential to grow and produce lignocellulosic biomass and oilseeds on high-salinity water such as seawater. No halophyte bioenergy crops have been domesticated to date. However many of the species that have been investigated have shown good characteristics, both in the composition and yield of the straw biomass and in the oilseeds to produce good-quality lignocellulosic ethanol, biodiesel, or other forms of bioenergy and compare favorably to conventional biofuel feedstocks. Here the potential of using halophytes as biofuel feedstocks is reviewed, and the various considerations that would need to be taken into account before embarking on any commercial effort to produce biofuels from halophytes are described.


Table 2 . Metabolites composition of some of the microalgae and cyanobacteria. 
Comparison of aerial biomass productivity of conventional feed sources with a few marine microalgae with commercial potential.
The composition of essential amino acids (g/100 g protein) in different feed ingredients and microalga Nannochloropsis sp. and cyanobacterium Chroococcidiopsis sp.
Sustainable Agriculture in the Arabian/Persian Gulf Region Utilizing Marginal Water Resources: Making the Best of a Bad Situation

April 2018

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756 Reads

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67 Citations

One way to encourage agricultural self-sufficiency in arid regions is to increase the productivity of conventional freshwater agriculture. Another way is to develop and implement novel strategies and technologies that do not deplete scarce freshwater. Here we describe several options for countries in the Gulf region to increase their agricultural production by taking advantage of a lesser used resource—marginal water. Marginal water can be treated sewage effluent, produced oilfield water, brackish groundwater or seawater. We describe how this resource can be used to grow salt-tolerant forage crops, microalgae and aquaculture crops. Policies needed to implement and/or scale-up such practices are also outlined.


Table 3 . Descriptive statistics (minimum, maximum and coefficient of variation) for developmental stages of eleven S. bigelovii populations irrigated with seawater. Values having the same letter are not significantly different (LSD 0.05 ). Multiple range test was conducted per trait for all S. bigelovii populations (per column).
Table 5 . Significant (p<0.01 and p<0.05) correlation coefficients among all growth parameters for eleven S. bigelovii populations irrigated with seawater (SW).
Table 6 . Path coefficient analysis showing direct and indirect effects of several traits on seed weight/m 2 for all S. bigelovii populations.
Table 7 . Path coefficient analysis showing direct and indirect effects of several traits on fresh shoot biomass /m 2 for all S. bigelovii populations.
Evaluating the growth performance of eleven Salicornia bigelovii populations under full strength seawater irrigation using multivariate analyses

October 2016

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362 Reads

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38 Citations

Australian Journal of Crop Science

Halophytes constitute an indispensable part of seawater farming systems implemented in coastal areas of desert lands where they do not compete with good quality land and water resources. Salicornia bigelovii is considered one of the most promising halophytic species that will grow in a biosaline context. However, suitable germplasm needs to be identified, domesticated and improved in order to achieve high enough yields to compete economically to conventional crops. In the current study, eleven S. bigelovii Torr. populations were evaluated for 22 growth parameters and irrigated with full-strength seawater (SW≈55 dS/m).The study assessed the adaptability of such plant material under the hot and dry climatic conditions that prevail in the Arabian Peninsula. High variation was observed among S. bigelovii populations for most of the characteristics under study. S. bigelovii genotypes were categorized in four groups based on their growth performance and use: for seed production, green biomass as vegetables for human consumption, and biomass as livestock feed; the fourth category was comprised of those halophytic genotypes that demonstrated poor overall performance. Pearson correlation analysis highlighted positive and negative associations among the growth parameters. Path analysis unveiled some interesting interrelationships among growth parameters that could be used for further selection to increase seed production such as number of seeds per spike, number of branches, days to flowering and duration of seed maturity. Plant height and growth cycle could be selected for biomass improvement. The multivariate statistical analyses applied in this study, i.e. clustering, correlation and path analyses were very effective in classifying S. bigelovii genotypes and revealed interrelationships among growth traits that could be selected towards S. bigelovii improvement in terms of seed and biomass yield.


A Review of the North American Halophyte Suaeda linearis (Ell.) Moq.

June 2016

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43 Reads

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1 Citation

Suaeda linearis (Ell.) Moq. is a New World temperate, subtropical, and tropical maritime species that typically occurs 1.0–1.5 m above the mean high tide mark. It is a facultative annual that occurs on saturated substrates consisting of unconsolidated sand, shell fragments, and slightly elevated saline clays and sandy clays. Also known as sea blite, it is found in salinity conditions ranging from 10 to 50 parts per thousand. Sexual reproduction is the only mechanism of reproduction. Seed production is prolific and seed banks are well-supplied with this species. Seeds are dimorphic, and germination is high in both full sun and in shaded conditions.

Citations (8)


... This apparent weakness is exacerbated by negative correlations, both between these two topics and with other topics that would be expected to be closely related. For example, demographics of species sub-populations are often related to ontogenetic or sexual segregation of habitat preferences 44 , genetic connectivity is often a reflection of a species' dispersal behaviour 45 , and spatial management is less effective for species that can migrate beyond the borders of a protected area 46 . Despite these clear ecological connections, Population Structure, Genetics, and Markets and Management were all negatively correlated with Movement Ecology. ...

Reference:

Opportunities to enhance conservation success for sharks
Directed conservation of the world’s reef sharks and rays

Nature Ecology & Evolution

... The second set of connections can be seen in those groups of topics that associate with more than one part of the topic nexus. is subsequently linked closely with the key life-history topics, including Growth, Reproduction, Early Life, and Sexual Dimorphism, which are the underpinnings of fisheries stock assessments and management 26,27 . Fisheries & Bycatch also links to Spatial Distribution & Environmental Change, which is key in defining the spatial risk to sharks posed by fisheries [28][29][30] and mortality due to ship strikes 31 , as well as the future of fisheries and sharks in a changing climate 1 . Similarly, Spatial Management forms a secondary link between Markets & Fisheries Management and Public Perceptions and likely reflects the role that public attitudes and engagement play in both the establishment and ongoing effectiveness of management strategies for sharks 32,33 . ...

Widespread diversity deficits of coral reef sharks and rays
  • Citing Article
  • June 2023

Science

... Among most studied Salicornia species, S. bigelovii Torr is the most searched species as it is most salt tolerant (Ayala and O'Leary, 1995), which makes them promising for cultivation of this oilseed species in desert areas under irrigation with sea water (Glenn et al., 2013). S. bigelovii has attracted increasing interest due to its potential use in various applications, such as food due to its richness in nutrients such as ascorbic acid and chlorophyll in addition to its characteristic flavor (Lyra et al., 2020;Liu et al., 2020), in production of biofuels due to its oil content (El-Tarabily et al., 2020) and in agricultural and economic potential as biofertilizers, due to this species being associated with a variety of microorganisms that colonize roots of plant and establish a mutualistic relationship (mycorrhiza), which consequently promotes plant growth and also confers benefits to other plants (Pseudomonas sp. (SDT3), Bacillus velezensis (SMT38), Pseudarthrobacter oxydans (SRT15) and Bacillus zhangzhouensis (HPJ40) (Mathew et al., 2020;Valle-Romero et al., 2023). ...

Crop Potential of Six Salicornia bigelovii Populations Under Two Salinity Water Treatments Cultivated in a Desert Environment: A Field Study

... Marine predatory fish biomass has decreased dramatically since the onset of industrialised fishing Worm, 2003, 2005) and global elasmobranch (shark and ray) populations are in long-term decline Worm, 2003, 2005;Dulvy et al., 2014;MacNeil et al., 2020;Dulvy et al., 2021;Pacoureau et al., 2021;Simpfendorfer et al., 2023). The role of sharks in structuring marine communities (Ferretti et al., 2010;Heupel et al., 2014), and thus the potential for wider ecosystem impacts linked to ongoing depletion (Heithaus et al., 2008;McCauley et al., 2012), have prompted calls for conservation action (Chapman and Frisk, 2013). ...

Author Correction: Global status and conservation potential of reef sharks

Nature

... Overfishing currently puts one-third of all elasmobranch species at risk of extinction (Dulvy et al. 2021). Reefassociated sharks have almost completely vanished from around 20% of the world's coral reefs (MacNeil et al. 2020), and oceanic shark abundance has declined by 70% ). In the Greater Caribbean, where sharks were once described as one of the most common groups of species (Watkins 1924), anthropogenic pressures have led to the large-scale absence of sharks on coral reefs (Ward-Paige et al. 2010). ...

Global status and conservation potential of reef sharks

Nature

... A research study showed that microalgae cultivation in saline water could reduce the demand for agricultural land and freshwater by over 90% compared to soybean and maize production. This makes microalgae cultivation particularly valuable in regions experiencing water scarcity and soil degradation due to intensive farming [138]. Microalgae also exhibit higher productivity and resource efficiency compared to terrestrial crops. ...

Sustainable Agriculture in the Arabian/Persian Gulf Region Utilizing Marginal Water Resources: Making the Best of a Bad Situation

... These initiatives rely on the use of saline groundwaters either directly, or indirectly through land-based aquaculture, to irrigate Salicornia under these hyper-arid and saline conditions. The benefits from the food, fodder, and fuel value of halophyte production have been well detailed (Lyra et al. 2014(Lyra et al. , 2016Araus et al. 2021;Al-Tamimi et al. 2023a). However, less is known about the environmental impacts on groundwaters from the use of saline aquifers for irrigation. ...

Evaluating the growth performance of eleven Salicornia bigelovii populations under full strength seawater irrigation using multivariate analyses

Australian Journal of Crop Science