Ilan Marek’s research while affiliated with Technion – Israel Institute of Technology and other places

What is this page?


This page lists works of an author who doesn't have a ResearchGate profile or hasn't added the works to their profile yet. It is automatically generated from public (personal) data to further our legitimate goal of comprehensive and accurate scientific recordkeeping. If you are this author and want this page removed, please let us know.

Publications (342)


Relevant background and introduction to this research
Reported conditions do not effect the direct arylation of cyclopropene 2a
Substrate scope. All reactions were conducted on a 0.5 mmol scale at 0.25 M concentration unless otherwise noted. aConducted at 0.1 M concentration in THF at 50 °C for 20 h using 1 equiv. Ag2O instead of Me4NOAc
Kinetic isotope effect experiment
Proposed catalytic cycle

+1

General palladium-catalyzed cross coupling of cyclopropenyl esters
  • Article
  • Full-text available

May 2025

·

1 Read

Zachary P. Sercel

·

Ilan Marek

We report a method for the direct palladium-catalyzed cross coupling reactions of cyclopropenyl esters bearing a variety of substitution patterns with Csp² iodides. This reaction is largely insensitive to the electronic nature of the coupling partner. Tetramethylammonium acetate, a halide sequestrant, was exceptionally effective as an organic base. An observed KIE of 2.5 revealed C–H bond cleavage to be involved in the turnover-limiting step. This method enables the rapid assembly of cyclopropenes whose preparation previously required the use of toxic tin and arsenic reagents.

Download

Formally Stereoretentive SN1 Reactions of Homoallylic Tertiary Alcohols Via Nonclassical Carbocation

May 2025

·

3 Reads

Journal of the American Chemical Society

We present a stereoretentive nucleophilic substitution of homoallylic tertiary alcohols via the formation of a nonclassical cyclopropyl carbinyl (CPC) carbocation intermediate. This strategy enables the creation of highly congested tertiary centers with preserved stereocontrol, addressing the typical challenges of carbocation instability and reactivity in SN1 mechanisms. The stabilization of the CPC intermediate is crucial for achieving precise regio- and stereoselectivity, significantly enhancing the utility of SN1-type mechanisms in complex molecule synthesis.


Nucleophilic substitution reactions and our reaction design
Preparation of α‐fluoroalkyl cyclopropyl carbinols
Substrate scope of Fe‐catalyzed intramolecular Friedel–Crafts alkylation reaction.
Ring‐opening‐elimination reaction for selected electron‐deficient substrate.
Synthetic transformations.
Fe‐Catalyzed Stereospecific Intramolecular Friedel–Crafts‐type Reaction of Fluoroalkyl Cyclopropyl Carbinols via Non‐classical Carbocation

Here we describe a Fe‐catalyzed stereospecific intramolecular Friedel–Crafts‐type reaction of polysubstituted stereodefined fluoroalkyl cyclopropyl carbinols. This transformation provides access to a series of fluoroalkyl group‐substituted dihydro‐1H‐indenols bearing three continuous stereogenic centers including two congested tetra‐substituted stereocenters. The key to the realization of this reaction relies on the electronic destabilizing effect of fluoroalkyl group to tune the stability and reactivity of non‐classical cyclopropyl‐carbinyl cation intermediate. Functional group interconversions of the obtained diastereomerically pure dihydro‐1H‐indenols further demonstrated the synthetic utility of this rationally designed reaction.


Approaches to stereoselective SN1 reactions and complexity to selective reaction at non-classical carbocation
a, Established method for the stereoinvertive nucleophilic substitution at quaternary carbon stereocentre of cyclopropyl carbinol derivatives. b, Phenonium sulfonate ion pairs as intermediates in the intramolecular rearrangement of the 3-phenyl-butanol system. c, The interconversion reactions of cyclobutyl, cyclopropylcarbinyl (CPC) and allylcarbinyl derivatives into non-classical carbocations. d, Complexity generated by substitution.
Proposed molecular rearrangement with mechanistic blueprint
Double stereoinversion in nucleophilic substitution through molecular rearrangement: upon activation of alcohol 8, π-bond neighbouring group participation yields the stereodefined CPC 7, which undergoes a regioselective nucleophilic substitution, resulting in the fully rearranged product 9 with inversion of configuration at both C-3 and C-4.
Stereoinvertive nucleophilic substitution at quaternary carbon stereocentre in acyclic systems
a, Thiocyanation reactions were performed on a 0.15–0.4 mmol scale, with yields determined following purification via silica gel chromatography. Diastereomeric ratios were determined by analysing the ¹³C NMR spectra of the crude reaction mixtures. b, Hydrolysis reactions were conducted on a 0.15–0.4 mmol scale, and yields were measured after purification by silica gel chromatography. Diastereomeric ratios were determined from the ¹³C NMR spectra of the crude reaction mixtures. r.t., room temperature. c,d, Etherification and azidation reactions were carried out on a 0.2 mmol scale. Yields were determined following purification by silica gel chromatography, and diastereomeric ratios were evaluated through ¹³C NMR analysis of the crude reaction mixtures.
Convergent synthesis of starting materials (8a–8ab) from vinyl iodide or allyl phosphate
Stereoinvertive halogenation at quaternary stereocentre in acyclic systems
Stereospecific molecular rearrangement via nucleophilic substitution at quaternary stereocentres in acyclic systems

March 2025

·

4 Reads

·

1 Citation

Nature Chemistry

Nucleophilic substitution at tetravalent (sp³) carbon is a fundamental transformation in organic synthesis, essential for creating carbon–carbon and carbon–heteroatom bonds. While the mechanism of the SN2 reaction is well understood, achieving stereochemical control in SN1-type reactions remains extremely challenging due to the complexity of successive carbocation intermediates. Here we present a strategy for preparing complex molecular skeletons via stereospecific SN1 at a quaternary stereocentre in acyclic systems. By leveraging neighbouring group participation, we facilitate the selective formation of a unique cyclopropylcarbinyl cation intermediate that undergoes selective nucleophilic substitution with high diastereoselectivity and complete inversion of configuration at a distant position from the original carbocation via molecular rearrangement. This methodology has been applied to generate homoallylic tertiary fluorides, bromides, chlorides, ethers, thiocyanates and azides, demonstrating its applicability in accessing diverse functional groups with exceptional diastereoselectivities. This transformation opens new avenues for constructing complex molecular architectures through precise stereocontrol of C–C bond cleavage at a quaternary stereocentre in acyclic systems.



Access to Quaternary‐Substituted Cyclobutylsilanes by Ring Opening of Arylbicyclobutanes with Silyllithium Reagents

February 2025

·

5 Reads

·

3 Citations

Disclosed herein is the reaction of silyllithium reagents with quaternary‐substituted arylbicyclobutanes to diastereoselectively form polysubstituted cyclobutylsilanes by C−C bond cleavage. The bicyclobutanes are generated in situ, by lithium‐halogen exchange, from readily accessible (bromomethyl)iodocyclopropane precursors, rendering this a one‐pot transformation. The trapping of a generated cyclobutyllithium intermediate with an electrophile was also demonstrated, providing a cyclobutane product with vicinal quaternary stereocenters. The utility of the cyclobutylsilane products was showcased by Tamao−Fleming oxidation to prepare a quaternary‐substituted cyclobutanol.


Access to Quaternary‐Substituted Cyclobutylsilanes by Ring Opening of Arylbicyclobutanes with Silyllithium Reagents

January 2025

Angewandte Chemie

Disclosed herein is the reaction of silyllithium reagents with quaternary‐substituted arylbicyclobutanes to diastereoselectively form polysubstituted cyclobutylsilanes by C–C bond cleavage. The bicyclobutanes are generated in situ, by lithium‐iodine exchange, from readily accessible (bromomethyl)iodocyclopropane precursors, rendering this a one‐pot transformation. The trapping of a generated cyclobutyllithium intermediate with an electrophile was also demonstrated, providing a cyclobutane product with vicinal quaternary stereocenters. The utility of the cyclobutylsilane products was showcased by Tamao–Fleming oxidation to prepare a quaternary‐substituted cyclobutanol.


Iterative synthesis of stereodefined polyacetals and their domino-Coates–Claisen rearrangement

January 2025

·

8 Reads

We report a fully stereocontrolled synthesis of previously unknown unsaturated polyacetals through an iteration of two steps: (1) Pd-catalyzed hydroalkoxylation of alkoxyallenes; and (2) base-mediated isomerization of propargyl ethers into alkoxyallenes. Site- and stereoselective alkene isomerization of the capping allyl group initiates a domino-Coates–Claisen rearrangement, which completely rearranges the iteratively assembled backbone with the stereochemistry of the newly formed stereocentres controlled by the configuration of the acetal centres in the starting materials. The resulting products feature multiple stereocentres in a 1,3-relationship, which map onto a broad range of bioactive natural products, including deoxypropionates.


Stereoselective Synthesis of 1,n‐Dicarbonyl Compounds Through Palladium‐Catalyzed Ring Opening/Isomerization of Densely Substituted Cyclopropanols

November 2024

·

13 Reads

We report a highly diastereoselective protocol for the synthesis of 1,4‐ and 1,5‐dicarbonyl compounds from densely substituted cyclopropanols. The methodology involves a palladium‐catalyzed ring opening reaction followed by a “metal‐walk” and oxidation of a remote hydroxyl group. The methodology represents a new application of cyclopropanols as initiation sites for chain walking remote functionalization. Importantly, this approach provides a straightforward access to highly valuable succinaldehyde derivatives bearing vicinal quaternary and tertiary stereocenters as single diastereomers.


Stereoselective Synthesis of 1,n‐Dicarbonyl Compounds Through Palladium‐Catalyzed Ring Opening/Isomerization of Densely Substituted Cyclopropanols

November 2024

·

18 Reads

·

1 Citation

Angewandte Chemie

We report a highly diastereoselective protocol for the synthesis of 1,4‐ and 1,5‐dicarbonyl compounds from densely substituted cyclopropanols. The methodology involves a palladium‐catalyzed ring opening reaction followed by a “metal‐walk” and oxidation of a remote hydroxyl group. The methodology represents a new application of cyclopropanols as initiation sites for chain walking remote functionalization. Importantly, this approach provides a straightforward access to highly valuable succinaldehyde derivatives bearing vicinal quaternary and tertiary stereocenters as single diastereomers.


Citations (60)


... The most common PGs are ester and ether groups, which can handle the acidic glycosylation conditions well. Often, auxiliaries [147][148][149][150][151] are used to control stereoselectivity in sugar synthesis, specifically to achieve a high stereoselectivity (Fig. 8b). In 2018, Rijs, Boltje, and their team reported the use of collision-induced dissociation tandem mass spectrometry to produce glycosyl cations in the gas phase 60 . ...

Reference:

Elucidating reactive sugar-intermediates by mass spectrometry
Stereoinvertive SN1 Through Neighboring Group Participation

... Our group has a long-standing interest in stereoselective synthesis, particularly focusing on acyclic stereocontrol. In recent years, we have developed methodologies to create acyclic backbones with multiple stereocentres through the ring opening of cyclopropane [7][8][9][10][11][12][13] . These approaches use the exergonic ring Nature Chemistry Article https://doi.org/10.1038/s41557-025-01783-2 ...

Highly Diastereoselective Preparation of Tertiary Alkyl Thiocyanates en Route to Thiols by Stereoinvertive Nucleophilic Substitution at Nonclassical Carbocations
  • Citing Article
  • November 2023

Organic Letters

... Linear alkanes [16], as major constituents of petroleum and natural gas, exhibit remarkable chemical stability that hinders their direct conversion into high-value organic chemical products. However, their catalytic oxidation into oxygenated compounds (alcohols, aldehydes, ...

Selective Terminal Functionalization of Linear Alkanes
  • Citing Article
  • May 2023

Angewandte Chemie

Jeffrey Bruffaerts

·

Inbar Kesten

·

·

[...]

·

Ilan Marek

... [16] In 2023, Marek and Zhang's group reported a chiral dirhodium(II) complex-catalyzed enantioselective cyclopropenation reaction of disubstituted alkynes with 2,2,2trifluorodiazoethane (Scheme 2). [17] By screening the reaction conditions, they found that both the solvent and chiral dirhodium catalyst [18] played crucial roles in improving the reactivity and controlling the enantioselectivity. This transformation provided efficient access to a broad range of enantioenriched trifluoromethyl-substituted cyclopropenes with excellent functional group compatibility. ...

Dirhodium(II)-catalyzed enantioselective cyclopropenation of internal alkynes with trifluoromethyl carbene
  • Citing Article
  • May 2023

Chem Catalysis

... Our group has a long-standing interest in stereoselective synthesis, particularly focusing on acyclic stereocontrol. In recent years, we have developed methodologies to create acyclic backbones with multiple stereocentres through the ring opening of cyclopropane [7][8][9][10][11][12][13] . These approaches use the exergonic ring Nature Chemistry Article https://doi.org/10.1038/s41557-025-01783-2 ...

Highly Diastereoselective Preparation of Tertiary Alkyl Isonitriles by Stereoinvertive Nucleophilic Substitution at a Nonclassical Carbocation

Organic Letters

... Our group has a long-standing interest in stereoselective synthesis, particularly focusing on acyclic stereocontrol. In recent years, we have developed methodologies to create acyclic backbones with multiple stereocentres through the ring opening of cyclopropane [7][8][9][10][11][12][13] . These approaches use the exergonic ring Nature Chemistry Article https://doi.org/10.1038/s41557-025-01783-2 ...

Stereospecific nucleophilic substitution at quaternary carbon stereocenters of cyclopropyl carbinols
  • Citing Article
  • February 2023

Chem

... [8,9] The known methods for the preparation of trifluoromethylsubstituted cyclopropanes were a topic of several comprehensive reviews. [10][11][12][13] For the case of trisubstituted cyclopropanes, they typically fall into one of the three general strategies: Michael-type addition of nucleophiles to CF 3 -substituted alkenes followed by intramolecular cyclization [14][15][16][17][18][19] (Scheme 1, A), metal-promoted carbene transfer (Scheme 1, B), [20][21][22][23][24][25][26][27][28][29] and the [3 + 2] cycloaddition -N 2 extrusion sequence (Scheme 1, C); [30][31][32][33][34][35][36] cyclopropanation of CF 3 -substituted styrenes [37] and modification of CF 3 -containing cyclopropenes [38] can be also mentioned. The major drawbacks of the first two approaches include involvement of strong organic or mineral bases, which impose limitations on the reaction scope (A), poor atom economy (A and B), and the use of expensive metal catalysts (B). ...

Stereoselective Preparation of CF 3 -Containing Cyclopropanes
  • Citing Article
  • December 2022

Organic Letters

... Marek and colleagues devised an effective approach for the stereoselective synthesis of tertiary C-O bonds by a stereoinvertive nucleophilic substitution at the quaternary carbon stereocenter of cyclopropyl carbinol derivatives (Scheme 71). The nucleophiles used in this substitution process are alcohols, phenols, and water [117]. The synthesis of highly congested tertiary homoallyl alcohols and ethers can now be achieved in a stereoselective manner due to this substitution reaction, which proceeds in mild circumstances and tolerates several functional groups. ...

Stereoselective Construction of Tertiary Homoallyl Alcohols and Ethers by Nucleophilic Substitution at Quaternary Carbon Stereocenters

... Our group has a long-standing interest in stereoselective synthesis, particularly focusing on acyclic stereocontrol. In recent years, we have developed methodologies to create acyclic backbones with multiple stereocentres through the ring opening of cyclopropane [7][8][9][10][11][12][13] . These approaches use the exergonic ring Nature Chemistry Article https://doi.org/10.1038/s41557-025-01783-2 ...

Stereoselective Construction of Tertiary Homoallyl Alcohols and Ethers by Nucleophilic Substitution at Quaternary Carbon Stereocenter
  • Citing Article
  • November 2022

Angewandte Chemie

... While these are interesting advantages, the use of epoxidation fine-tuning with structural support reveals that bulkier substrates have increasing difficulty in diffusing into the metallic catalytic center. This is backed by the recent work of Cohen [101], where heavy alkenyl cyclopropyl carbinol substrates were only epoxidized with [VO(acac) 2 ] complexes due to the impressive selectivity from the rigid substrate's cyclopropyl core. With more than 75% yield and a product ratio of 98:02, the proposed layer-models had no impact when they were exposed to the catalytic sites, as an improvement in enantioselectivity was achieved (explained due to the steric effects of the epoxidation). ...

Directed Diastereoselective Cyclopropanation and Epoxidation of Alkenyl Cyclopropyl Carbinol Derivatives

Organic Letters