Hyun-Do Jang’s research while affiliated with National Institute of Biological Resources and other places

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Publications (24)


Comparative morphological analysis reveals a new record of Boehmeria nakashimae (Urticaceae) in Korea
  • Article

September 2023

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12 Reads

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1 Citation

Korean Journal of Plant Taxonomy

Hyeong Jun JO

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Hyun-Do JANG

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Dae-Hui JEONG

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[...]

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A newly recorded species, Boehmeria nakashimae Yahara, is confirmed for the first time to be distributed on forest edges on Jejudo Island, Korea. This species is known to be endemic to northern Kyushu, Japan. It is characterized by ovate to broadly ovate, ellipticovate, or sub-orbicular middle leaf shapes, serrulate-dentate and uniform margins, 17–29 teeth on one side, a short caudate or narrowly acute apex, dense glomerules at fruiting, and densely strigillose on the stems, both surfaces of the leaves, the perianth of staminate flowers, and achenes. Therefore, it is given the new name ‘Je-ju-top-mo-si-pul’ in Korean based on its serrulate-dentate leaf margin and geographical distribution. A description, photographs, illustrations, and keys of related taxa in Korea are provided.


A checklist of endemic plants on the Korean Peninsula II
  • Article
  • Full-text available

June 2023

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308 Reads

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13 Citations

Korean Journal of Plant Taxonomy

Following recent taxonomic, distributional, and nomenclatural revisions, an updated checklist of the endemic plants on the Korean Peninsula is needed. This study provides an updated checklist of vascular plants endemic to the Korean Peninsula and describes their distribution within administrative provinces. The revised checklist includes 373 endemic taxa (304 species, six subspecies, 49 varieties, and 14 nothospecies) from 179 genera and 64 families, representing 9.5% of the total native flora of the Korean Peninsula. Asteraceae (41 taxa), Ranunculaceae (29 taxa), Liliaceae s.l. (24 taxa), and Rosaceae (22 taxa) were the most widely represented families. Compared with the previous most recent checklist published in 2017, 39 taxa were excluded from the checklist: one taxon was excluded because it did not have a valid published name; seven taxa were excluded because their natural habitat extended to neighboring countries; four taxa were excluded because they were treated as rank form; and 27 taxa were excluded because they have been identified as heterotypic synonyms of taxa distributed outside the Korean Peninsula. 52 new taxa have been included, based on the literature. This checklist will help to focus conservation efforts and provide a framework for research, conservation, and policy implementation for these endemic taxa.

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Fig. 1 Northern limit line and cur rent distributional ranges for 13 warm temperate evergreen broad-leaved tree species designated as climate-sensitive biological indicator species in South Korea. Blue dots indicate species locations and red lines indicate species northern distribution limits.
Latitudes of the northern distribution limit of 13 warm temperate evergreen broad-leaved tree species designated as climate- sensitive biological indicator species in South Korea
Northern distribution limits and future suitable habitats of warm temperate evergreen broad-leaved tree species designated as climate-sensitive biological indicator species in South Korea

December 2022

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97 Reads

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1 Citation

Journal of Ecology and Environment


Impatiens hambaeksanensis (Balsaminaceae), a new species from South Korea

October 2022

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142 Reads

A new species Impatiens hambaeksanensis from Gangwon-do, South Korea, is described and illustrated, based on its morphology and distribution. I. hambaeksanensis is different from I. furcillata , another similar Impatiens species in South Korea, in some ways: I. hambaeksanensis possesses a serrate leaf margin with flat tooth tip, while I. furcillata possesses a crenate leaf margin with erect tooth tip; it has an erect inflorescence, while I. furcillata has a pendulous inflorescence; it has a smaller flower which is 2–2.6 cm long, while I. furcillata has a flower of 2.3–3.2 cm; the flower is white or pinkish-white with yellowish and purplish spots, while I. furcillata has a white lower sepal and pinkish-white lateral united petals with yellowish spots; the distal part of the lower sepal is mostly not coiled or rarely 1-coiled, while that of I. furcillata is never coiled; the spur tip is expanded, round and slightly biparted, while that of I. furcillata is expanded, ellipsoidal and clearly biparted. A taxonomic description, a holotype and photos of morphological characteristics of the new species are provided. A table which includes the morphological comparison and a geographical distribution map are presented as well.


Mosla dadoensis (Lamiaceae), a new species from the southern islands of South Korea

September 2022

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265 Reads

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1 Citation

Mosla dadoensis (Lamiaceae), a new species from the southern islands of South Korea, is described and illustrated. The new species is morphologically similar to M. chinensis , but is distinguished from the latter by having two types of hairs on its stems, wider leaf blades, longer corolla length, and ellipsoid nutlets with a narrowly U-shaped extended area of abscission scar. Mosla dadoensis is also distinguished from the Chinese narrow endemic M. hangchouensis by having an included pistil to the corolla, smaller ellipsoid nutlets, and later flowering and fruiting season. Phylogenetic analyses, based on two nuclear ribosomal (ETS, ITS) and three chloroplast ( rbc L, mat K, trn L-F) DNA regions, confirmed that the new species was constructed as monophyletic, and that M. dadoensis and M. hangchouensis form a sister group with robust support. We hereby provide a detailed morphological description of M. dadoensis with its corresponding geographical distributions, and comparison tables of related taxa.


Nomenclatural review of new names proposed by Yong No Lee

March 2022

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18 Reads

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4 Citations

Korean Journal of Plant Taxonomy

This review provides information about the nomenclatural status of new names proposed by Dr. Yong No Lee, in accordance with the current International Code of Nomenclature for Algae, Fungi, and Plants. A total of 363 designations and names were proposed from 16 books and 95 papers by Dr. Yong No Lee, and their status was examined, with 161 designations found to be not validly published. In addition, 13 later isonyms and ten later homonyms were found by this review. However, 173 names were found to be legitimate. All designations and names were categorized according to their nomenclatural status and were listed by place of publication. The nomenclatural statuses of six designations or names, including “Iris odaesanensis,” were not confirmed in this review. It is therefore necessary to undertake further research into the nomenclatural status of these taxa by examining their types and published protologues.


Type specimens of vascular plants in the herbarium of the National Institute of Biological Resources (II)

March 2022

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21 Reads

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1 Citation

Phytotaxa

We provide information on 143 sheets of type specimens of 39 species and infraspecific taxa of vascular plants stored in the herbarium of the National Institute of Biological Resources. The specimens were donated by Changwon National University (Prof. Hyeok-Jae Choi), Chungbuk National University (Prof. Byoung-Un Oh), Ewha Womans University (Prof. Chang-Sook Lee), Hallym University (Prof. Young-Dong Kim), Jeonbuk National University (Prof. Muyeol Kim), Korea National Arboretum, Mokwon University (Prof. Jeong Ki Sim), Sungkyunkwan University (Prof. Seung-Chul Kim), and some researchers at KB. The specimens included four sheets for holotypes, 46 sheets for isotypes, and 93 sheets for paratypes of three species and infraspecific taxa of pteridophytes, 21 dicotyledons, and 15 monocotyledons. Nine sheets were sourced from China and 134 sheets were sourced from Korea.


Maximum-likelihood phylogenetic tree based on complete chloroplast genomes of 23 species. Numbers above nodes indicate bootstrap values with 1,000 replicates. The bottom scale bar represents the number of substitutions per site. The species highlighted is Ligularia species.
The complete chloroplast genome sequence of Ligularia stenocephala (Maxim.) Matsum. & Koidz. (Asteraceae: Senecioneae)

February 2022

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68 Reads

Ligularia stenocephala (Maxim.) Matsum. & Koidz is a widely known edible plant species in Korea. It contains various useful antioxidant compounds and has been developed as a horticultural cultivar blooming showy inflorescence. We report the complete plastid genome (plastome) of Ligularia stenocephala, a collection from Korea. The plastome of L. stenocephala is 151,158 base pairs (bp) long and includes a pair of inverted repeat (IR) regions (24,830 bp each) that are separated by a large single copy (LSC) region (83,265 bp) and a small single copy (SSC) region (18,233 bp). The phylogenetic tree shows that L. stenocephala is closely related to L. fischeri with strong bootstrap support.


The maximum likelihood tree of family Scrophulariaceae with the outgroup, Plantago fengdouensis, was constructed based on chloroplast genome sequences. Number on the nodes are bootstrap values from 1,000 replicates.
Characterization of the complete chloroplast genome of Scrophularia cephalantha endemic to Korea

October 2021

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41 Reads

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2 Citations

Scrophularia species are highly valued and widely used traditional medicinal plants in East Asia. In this article, the complete chloroplast genome of Scrophularia cephalantha, a species endemic to South Korea, is reported for the first time. The genome is 153,016 bp long, and it is composed of a pair of 25,485 bp inverted repeats (IRs), separated by a large single copy (LSC) region of 84,124 bp, and a small single copy (SSC) region of 17,922 bp. There are 133 predicted genes in the genome, comprising 88 protein-coding genes, 37 tRNAs, and 8 rRNAs, with an overall GC content of 38%. Phylogenetic analysis based on the chloroplast genome data showed that S. cephalantha is a sister species to S. buergeriana and S. ningpoensis. The data provide useful molecular information for phylogenetic and evolutionary studies of the genus Scrophularia and its related species.


A chromosome‐scale genome assembly and annotation of the spring orchid (Cymbidium goeringii)

October 2021

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98 Reads

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13 Citations

Molecular Ecology Resources

Cymbidium goeringii, commonly known as the spring orchid, has long been favored for horticultural purposes in Asian countries. It is a popular orchid with much demand for improvement and development for its valuable varieties. Until now, its reference genome has not been published despite its popularity and conservation efforts. Here, we report the de novo assembly of the C. goeringii genome, which is the largest among the orchids published to date, using a strategy that combines short‐ and long‐read sequencing and chromosome conformation capture (Hi‐C) information. The total length of all scaffolds is 3.99 Gb, with an N50 scaffold size of 178.2 Mb. A total of 29,556 protein‐coding genes were annotated and 3.55 Gb (88.87% of genome) repetitive sequences were identified. We constructed pseudo molecular chromosomes using Hi‐C, incorporating 89.4% of the scaffolds in 20 chromosomes. We identified 220 expanded and 106 contracted genes families in C. goeringii after divergence from its close relative. We also identified new gene families, resistance gene analogs and changes within the MADS‐box genes, which control a diverse set of developmental processes during orchid evolution. Our high quality chromosomal‐level assembly of C. goeringii can provide a platform for elucidating the genomic evolution of orchids, mining functional genes for agronomic traits and for developing molecular markers for accelerated breeding as well as accelerating conservation efforts.


Citations (10)


... Lév.) Koidz. and A. uljinensis B. U. Oh and H. J. Choi are endemic to Korea, with distributions limited exclusively to Korea [8]. ...

Reference:

Comparison of the Complete Chloroplast Genomes of Astilbe: Two Korean Endemic Plant Species
A checklist of endemic plants on the Korean Peninsula II

Korean Journal of Plant Taxonomy

... Using both de novo and library-based repetitive sequence annotation, we annotated 82.95% of the G. gibba genome as repeat elements. The repetitive content of G. gibba was higher than the most of the other sequenced orchids except for Cymbidium goeringii (88.87%; Chung et al. 2022). Retrotransposable elements, known to be the dominant form of repeats in angiosperm genomes, constitute a large part of the genome and include the most abundant subtypes, such as LTR/Copia (15.82%), ...

A chromosome‐scale genome assembly and annotation of the spring orchid (Cymbidium goeringii)
  • Citing Article
  • October 2021

Molecular Ecology Resources

... Scrophularia L. belongs to the family Scrophulariaceae, which comprises approximately 200-270 species (Ortega Olivencia, 2009;Jang et al., 2021). This genus is distributed throughout the Northern Hemisphere and has square stems (sometimes winged stems) and generally opposite leaves. ...

Characterization of the complete chloroplast genome of Scrophularia cephalantha endemic to Korea

... Despite projections of suitable conditions (based on five climatic predictors) on some portion of the westernmost region, soil salinity, a variable not accounted for in this study, may have prevented the possible distribution of white forsythia near the western coast, except the SOUTHERN group, which is currently the only extant population closest to the Yellow Sea. This emphasizes the identity of this basal lineage as a stable, rear-edge population(Hampe & Petit, 2005) which remained unmixed and has been in existence in situ since before the Early Holocene, not to mention the conservation significance of the protected area (Byeonsanbando National Park) where this genetic group is found(Leem et al., 2020). ...

Floristic study of Byeonsanbando National Park in Korea
  • Citing Article
  • December 2020

Korean Journal of Plant Taxonomy

... Carex has been placed within the tribe Cariceae and divided into several subgenera in many ways based on the following characters: the stigma number, achene shape, inflorescence structure, and arrangement of the staminate and pistillate flowers within the spikes (Ball, 1990;Reznicek, 1990;Goetghebeur, 1998;Nam et al., 2020). Traditional subgeneric classification was recognized by Kükenthal (1909): subg. ...

Carex brevispicula (Cyperaceae), a new species from Korea
  • Citing Article
  • December 2020

Korean Journal of Plant Taxonomy

... This small volcanic island spans 187,554 m 2 and consists of two primary islets. Arabis takesimana Nakai is endemic to Korea and mainly distributed in Ulleung-do Island (Yang et al. 2015). A plant sample of A. takesimana was collected from Ulleung-do Island, a volcanic island located 87 km northwest of Dok-do Island (Sun et al. 2014). ...

A florisitic study of Ulleungdo Island in Korea

Korean Journal of Plant Taxonomy

... Provincial Park (Ro- Young et al., 2014) The research is focused on 800 taxa are distributed in the Chilgapsan Provincial Park. (Kellison et al., 2017) The research is focused on public parks. ...

The Flora of Vascular Plants in the Chilgapsan Provincial Park, Korea

Journal of Asia-Pacific Biodiversity

... Seven species of Scrophularia (S. buergeriana, S. koraiensis, S. kakudensis, S. takesimensis, S. cephalantha, S. kakudensis var. microphylla, and S. alata) are distributed throughout Korea (Jang and Oh, 2013). All Korean Scrophularia species are included in sect. ...

A Taxonomic Study of Korean Scrophularia L. (Scrophulariaceae) Based on Morphological Characters
  • Citing Article
  • April 2013

Korean Journal of Plant Resources

... In terms of biodiversity conservation, these findings indicate that cliff plant communities along the coasts might be sensitive to biological invasion of alien plants 11 , which could be magnified by grazing of the introduced cliff-dwelling ungulates. In fact, the proportion of alien species was similar between the grazed coastal cliffs (9.8%) and non-cliff areas (8.9%) [51][52][53][54] , both of which were higher than those in the ungrazed coastal cliffs (5.3%) as well as the inland cliffs (0.6-1.4%). Considering that coastal cliffs of the neighboring, well-preserved island reserve featured the lower proportion of alien plant species (2.1%) 30 , the anthropogenically introduced herbivores should be excluded to conserve the native plant communities along the coastal cliffs. ...

Floristic Study of Gageodo in Korea

Korean Journal of Plant Resources