Hong Xi's research while affiliated with Seoul Semiconductor Co. and other places

Publications (83)

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Utricularia tenuicaulis Miki 1935 is an aquatic carnivorous plant species found in East Asia including Korea and Japan. In this study, the chloroplast genome of U. tenuicaulis was successfully sequenced. The assembled genome (153,976 bp; GC ratio, 37.0%) contains four subregions, with the large single copy (LSC; 84,596 bp; 34.9%) and small single c...
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White-backed planthopper (WBPH), Sogatella furcifera (Horváth), is one of the major sap-sucking rice pests in East Asia. We have determined a new complete mitochondrial genome of WBPH collected in the Korean peninsula using NGS technology. Its length and GC percentages are 16,613 bp and 23.8%, respectively. We observed one polymorphic site, a non-s...
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The chloroplast genome of Limonium tetragonum (Thunb.) Bullock, a halophytic species, was sequenced to understand genetic differences based on its geographical distribution. The cp genome of L. tetragonum was 154,689 bp long (GC ratio is 37.0%) and has four subregions: 84,572 bp of large single-copy (35.3%) and 12,813 bp of small single-copy (31.5%...
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The complete chloroplast genome of Zoysia macrostachya Franch. & Sav. isolated in Korea is 135,902 bp long (GC ratio is 38.4%) and has four subregions; 81,546 bp of large single-copy (36.3%) and 12,586 bp of small single-copy (32.7%) regions are separated by 20,885 bp of inverted repeat (44.1%) regions, including 130 genes (83 protein-coding genes,...
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Castanopsis sieboldii (Makino) Hatus is an evergreen tree that distributes in Eastern Asia including Islands of Korea and Japan. The chloroplast genome of C. sieboldii was successfully sequenced. Its length is 160,705 bp long (GC ratio is 36.8%) and has four subregions: 90,821 bp of large single copy (34.6%) and 19,014 bp of small single copy (30.8...
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GATA transcription factors (TFs) are widespread eukaryotic regulators whose DNA-binding domain is a class IV zinc fnger motif (CX2CX17–20CX2C) followed by a basic region. We identifed 262 GATA genes (389 GATA TFs) from seven Populus genomes using the pipeline of GATA-TFDB. Alternative splicing forms of Populus GATA genes exhibit dynamics of GATA g...
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Apostichopus japonicus (Selenka, 1867), is one of the economically important species cultivated in the adjacent seas in East Asian countries. Due to this importance, 17 complete mitochondrial genomes of A. japonicus are available now. Nucleotide diversity of 17 A. japonicus mitochondrial genomes exhibited gene-specific features, which can be utiliz...
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Arabidopsis thaliana (L.) Heynh. is a small plant species that serves as a model organism of plant biology and genetics. Here, we present the first complete mitochondrial genome of Korean A. thaliana natural isolate (named as 180404IB4), which is 368,875 bp long and contains 58 genes (33 protein-coding genes, 22 tRNAs, and three rRNAs), with a GC r...
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We presented a complete chloroplast genome of a new species candidate of Plantago depressa, Willd. named as Plantago wonjuenesis sp. nov, which is 164,946 bp long (GC ratio is 38.0%) and has four subregions: 82,985 bp of large single copy and 4,647 bp of small single-copy regions are separated by 38,657 bp of inverted repeat regions including 94 pr...
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Sogatella furcifera Horvath, commonly known as the white-backed planthoppers (WBPH), is an important pest in East Asian rice fields. Fungal endosymbiosis is widespread among planthoppers in the infraorder Fulgoromorpha and suborder Auchenorrhyncha. We successfully obtained complete mitogenome of five WBPH fungal endosymbionts, belonging to the Ophi...
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GATA transcription factors (TFs) are widespread eukaryotic regulators whose DNA-binding domain is a class IV zinc finger motif (CX2CX17-20CX2C) followed by a basic region. Due to the low cost of genome sequencing, multiple strains of specific species have been sequenced: e.g., number of plant genomes in the Plant Genome Database (http://www. plantg...
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Korean effective microorganisms (KEM) comprise a commercial microbial complex originating from the microorganisms found in traditional Korean fermented foods, including kimchi. Using next-generation sequencing (NGS) technology, the complete genome sequence of Lentilactobacillus parabuchneri, considered a major species of KEM, was assembled. L. para...
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Blochmannia endosymbionts ( Gammaproteobacteria ) live in bacteriocytes, which are specialized cells found in the genus Camponotus and its neighbor genera. In this announcement, we describe the complete genome sequence of the Blochmannia endosymbiont of Colobopsis nipponica , which originated from a colony collected in the Republic of Korea.
Poster
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Due to the rapid development of sequencing technologies, at least 2,174 plant genomes of 713 species have been sequenced, which are available on the recent released Plant Genome Database (PGD; Release 2.7; http://www.plantgenome.info/). Based on the PGD, 27 of 162 species of widely used herbal plants and 52 of 559 herbal plants listed in the ‘herba...
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The genus Crematogaster is a diverse group of ants found around the world. We have completed the mitochondrial genome of Crematogaster teranishii, which is the first mitochondrial genome of the genus. The mitochondrial genome is 17,442 bp long and 20.3% in GC ratio, which is similar to those of other ants. It contains 13 protein-coding genes, two r...
Poster
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Owing to next generation and third generation sequencing technologies, a large amount of plant genomes have been sequenced and released in public. To deal with them systematically and efficiently, Plant Genome Database (PGD; http://www.plantgenome.info/) was established and has been updated more than 4 years. Here, we announced recently updated Rel...
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We de novo assembled the complete mitochondrial genome of the green peach aphid, Myzus persicae, using its genomic DNA isolated from the bell pepper in Korea. The circular mitogenome of M. persicae is 16,936 bp long and contains the standard 37 genes: 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes, as well as a single con...
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We have determined the second mitochondrial genome of Epanerchodus koreanus Verhoeff, 1937 collected in limestone cave of Korea. The circular mitochondrial genome of E. koreanus is 15,581 bp long. It includes 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes. Its gene order was different from the rest three Polydesmida mit...
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We have determined a mitochondrial genome of Ricania speculum (Walker, 1851) collected in Jeollabuk-do, Republic of Korea. The circular mitogenome of R. speculum is 15,530 bp long which is shorter than that of the previous mitogenome of R. speculum by 199 bp. It includes 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNAs. Intras...
Poster
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Accumulated researches for invasive insect pests have presented that various pests have been already settled down or are in progress to invasion to Korea: e.g., Solenopsis invicta, Linepithema humile, Metcalfa pruinosa, and Anoplolepis gracilipes. The Integrated Platform for Invasive Pests (IPIP; http://ipip.infoboss.co.kr:2020/) which was develope...
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Completed mitochondrial genome of a new species candidate of Rosa rugosa, named as Rosa angusta, is 303,484 bp long. The overall GC content of this mitochondrial genome is 45.2%. It contains 52 genes covering 31 protein-coding genes, 17 tRNAs, and 3 rRNAs. In comparison to R. rugosa mitochondrial genome assembled from the public NGS raw reads, 124...
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Figulus binodulus Waterhouse is a small stag beetle distributed in East Asia. We determined the first mitochondrial genome of F. binodulus of which is 16,261-bp long including 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNAs, and a single large noncoding region of 1,717 bp. Gene order of F. binodulus is identical to the ancestral...
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Arabidopsis thaliana (L.) Heynh. is a model organism of plant molecular biology. More than 1,700 whole genome sequences have been sequenced, but no Korean isolate genomes have been sequenced thus far despite the fact that many A. thaliana isolated in Japan and China have been sequenced. To understand the genetic background of Korean natural A. thal...
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Blochmannia endosymbionts, belonging to Gammaproteobacteria, live in bacteriocytes, which are specialized cells for these bacterial species in the Camponotus genus (carpenter ants). In this announcement, we describe the complete genome sequence of the Blochmannia endosymbiont of Camponotus nipponensis, which originated from a C. nipponensis colony...
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The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea is 155,125 bp long (GC ratio is 36.9%) and has four subregions: 84,458 bp of large single copy (34.9%) and 18,737 bp of small single copy (30.4%) regions are separated by 25,965 bp of inverted repeat (42.6%) regions including 129 genes (84 protein-coding genes, eight rRNAs...
Poster
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The Dolichoderus quadripunctatus group is a taxonomic group found in the Holarctic regions, characterized by their propodeum overhanging the petiole and pronotum without angles. Currently four North American and two Eurasian species have been recognized. The Eurasian complex is composed of the European D. quadripunctatus and the east Asian D. sibir...
Poster
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Due to the increment of international trade, insect pests have been invaded from outside of Korea: e.g., Solenopsis invicta, Metcalfa pruinosa, and Anoplolepis gracilipes. Various efficient methods to identify and to monitor them, especially using molecular techniques have been established. Fundamental data for these methods should be marker sequen...
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Ricania speculum is called as black planthopper, belonging to the family Ricaniidae. We have determined a mitochondrial genome of fungal endosymbiont of R. speculum, belonging to the family Ophicocordycipitaceae. The circular mitogenome of this fungus is 66,785 bp including 32 protein-coding genes, 2 ribosomal RNA genes, and 19 transfer RNAs. Its G...
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Whole genome sequence of Abeliophyllum distichum Nakai (Oleaceae) cultivar Ok Hwang 1 Ho, which is Korean endemic species, was recently sequenced to understand its characteristics. Acteoside is one of major useful compounds presenting various activities, and its several proposed biochemical pathways were reviewed and integrated to make precise bioc...
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We presented two complete chloroplast genomes of cold resistance coffee trees (Coffea arabica L.), named as CH1 and CH2 cultivated in Jeju island, Korea. Their length is 155,187 bp long (GC ratio is 37.4%) and has four subregions: 85,160 bp of large single copy (LSC; 35.4%) and 18,135 bp of small single copy (SSC; 31.3%) regions are separated by 25...
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Rhopalosiphum nymphaeae (Linnaeus, 1761) is a heteroecious polyphagous aphid, which can survive underwater. We have determined mitochondrial genome of R. nymphaeae collected in Korea. The circular mitogenome of R. nymphaeae is 15,594 bp including 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNAs, and a single large non-coding regio...
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Hipparchia autonoe (Esper, 1783) is a protected butterfly species found in Mt. Halla in South Korea. We have determined mitochondrial genome of H. autonoe collected in Mt. Halla. The circular mitogenome of H. autonoe is 15,300 bp long, which is shorter than previously sequenced mitogenome by 189 bp due to differences of tandem repeats. It includes...
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Riccia fluitans L. is the most common species in Riccia genus. To investigate intraspecific variations on mitochondrial genomes of R. fluitans, we completed mitochondrial genome of R. fluitans. Its length is 185,640 bp, longer than that of NC_043906 by 19 bp and it contains 74 genes (42 protein-coding genes, 3 rRNAs, 28 tRNAs, and 1 pseudogene). 18...
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Nylanderia flavipes (Smith, 1874) is a Formicine ant found in East Asia. We have completed mitochondrial genome of N. flavipes of which length is 16,687 bp including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs, and a control region. The base composition was AT-biased (GC ratio is 18.9%). Gene order of N. flavipes presents a uni...
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Aphaenogaster famelica (Smith, 1874) is a slender ant found in Korea. We have completed the mitochondrial genome of A. famelica of which length is 19,464 bp, the third longest ant mitogenome so far. It was AT-biased (GC ratio is 18.0%) and includes 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and a control region. The ex...
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Rotunda rotundapex (Miyata & Kishida, 1990) is a silk moth identified in Korea. We completed its mitochondrial genome which is 15,298 bp long and the shortest mitogenome of Bombycidae s.str. It includes 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs, and a control region. Comparison with COI sequence of Taiwan isolate suggests the...
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We presented the second complete chloroplast genome of the plant. The length of chloroplast genome is 158,587 bp, consisting of four subregions: 87,050 bp of LSC and 18,503 bp of SSC regions separated by a pair of 26,517 bp IR regions. It includes 129 genes (84 protein-coding genes, 8 rRNAs, and 37 tRNAs). A low-level of molecular variation within...
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Ochetellus glaber (Mayr, 1867) is a dolichoderine ant found in the warm regions of Asia and Australia. We have determined the mitochondrial genome of O. glaber whose length is 16,259 bp including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs, and a single large control region. The base composition was AT-biased (GC ratio is 17.8%...
Poster
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Ants are eusocial insects belonging to family Formicidae. They have been investigated in vaious aspects, one of which is utilizing molecular sequences such as mitochondrial genomes and whole genomes. Due to rapid development of NGS technologies, speed of releasing whole genome sequences of insect species has increased sharply, resulting in whol...
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Aconitum coreanum (H. Lév.) Rapaics listed in the Korean Red List is a medicinal herb. We presented complete chloroplast genome, which is 157,024 bp long and has four subregions: 87,637 bp of large single-copy and 16,901 bp of small single-copy regions, which are separated by two 26,243 bp inverted repeat regions including 132 genes (86 protein-cod...
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Viburnum erosum is a deciduous shrub distributed in eastern Asia. As part of the systematic study to understand the phylogenetic relationship of V. erosum, we present the complete chloroplast genome of V. erosum. Its length is 158,624 bp and it has four subregions: 87,060 bp of large single-copy and 18,530 bp of small single-copy regions separated...
Poster
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GATA transcription factors (TFs) are widespread eukaryotic regulators whose DNA-binding domain is a class IV zinc finger motif (CX2CX17-20CX2C) followed by a basic region. With 349 Ascomycota fungal genomes belonging to 159 genera, we successfully identified 2,437 GATA genes (2,486 GATA TFs) to understand phylogenomic position of Ascomycota fungal...
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Populus alba x Populus glandulosa is a hybrid species made by Dr. Hyun. It is called as Hyunsasi tree in Korea. It has been used as a good resource for genetic engineering because it is sterile. Here, we presented its complete chloroplast and mitochondrial genomes: chloroplast genome is identical to that of P. alba (156,505 bp and 129 genes coverin...
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We presented complete chloroplast genome of Prince Ginseng, Pseudostellaria heterophylla which is 149,795 bp long and has four subregions: 81,460 bp of large single copy (LSC) and 16,983 bp of small single copy (SSC) regions are separated by 25,676 bp of inverted repeat (IR) regions including 126 genes (81 CDS, 8 rRNAs, and 37 tRNAs). The overall G...
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To understand genetic features of new candidate cultivar, Dae Ryun of A. distichum, chloroplast genome was sequenced. Its length is 156,019 bp and has four subregions: 86,783 bp of large single-copy (LSC) and 17,828 bp of small single-copy (SSC) regions are separated by 25,704 bp of inverted repeat (IR) regions including 133 genes (87 protein-codin...
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Complete chloroplast genome of candidate new species from Rosa rugosa, named as Rosa angusta, is 156,989 bp long and has four subregions: 86,227 bp of large single copy (LSC) and 18,816 bp of small single copy (SSC) regions are separated by 25,793 bp of inverted repeat (IR) regions including 130 genes (85 protein-coding genes, eight rRNAs, and 37 t...
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Cirsium rhinoceros (H.Lév. & Vaniot) Nakai has been used a traditional medicine. Complete chloroplast genome of C. rhinoceros is 152,576 bp long and has four subregions: 87,262 bp of large single copy (LSC) and 21,486 bp of small single copy (SSC) regions that are separated by 18,742 bp of inverted repeat (IR) regions including 133 genes (88 protei...
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To understand genetic background of Salix gracilistyla Miq., we presented its complete chloroplast genome which is 155,557 bp and has four sub regions: 84,530 bp of large single copy (LSC) and 16,218 bp of small single copy (SSC) regions are separated by 27,405 bp of inverted repeat (IR) regions including 130 genes (84 protein-coding gene, eight rR...
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We presented complete chloroplast genome of Coffea arabica BM1 which is 155,189 bp long and has four subregions: 85,159 bp of large single copy (LSC), and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, 8 rRNAs, and 37 tRNAs). The overall GC conten...
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Liriodendron tulifipera L. belongs to Magnoliaceae which is one of the basal angiosperm families. To understand intra-species variations on chloroplast genome in Liriodendron genus, we presented complete chloroplast genome of L. tulifipera, which is 156,387 bp long and has four subregions: 85,606 bp of large single copy (LSC) and 18,778 bp of small...
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Neocaridina heteropoda koreana Kubo, 1938 is a freshwater shrimp native to the Korean peninsula. We have determined the mitogenome of N. heteropoda koreana, which's length is 15,558 bp long including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs, and a single large non-coding region of 674 bp. Its GC ratio is 33.0%. Gene order of...
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Chloroplast genome of Sang Jae, new candidate cultivar of Abeliophyllum distichum Nakai, has been sequenced to reveal infraspecific relationship of wildtypes and cultivars. Its length is 156,008 bp long (GC ratio is 37.8%) and has four subregions: 86,773 bp of large single copy (35.8%) and 17,827 bp of small single copy (31.9%) regions are separate...
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We presented complete chloroplast genome of Leucobryum juniperoideum which is 124,649 bp long and has four subregions: 86,309 bp of large single copy (LSC) and 18,696 bp of small single copy (SSC) regions are separated by 9,882 bp of inverted repeat (IR) regions including 127 genes (82 protein-coding genes, eight rRNAs, and 37 tRNAs). The overall G...
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We presented a complete chloroplast genome of Fissidens nobilis which is 124,962 bp long and has four subregions: 86,122 bp of large single-copy (LSC) and 18,708 bp of small single-copy (SSC) regions are separated by 10,066 bp of inverted repeat (IR) regions including 127 genes (82 protein-coding genes, 8 rRNAs, and 37 tRNAs). The overall GC conten...
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The fall armyworm, Spodoptera frugiperda, is a serious pest in large numbers on more than 350 plant species in the world. We have determined a 15,388 bp mitogenome of S. frugiperda which includes 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNAs. The base composition was AT-biased (81.3%). Phylogenetic trees present that Korean...
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We presented complete chloroplast genome of Coffea arabica L. 'Typica' which is 155,187 bp long and has four subregions: 85,159 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, eight rRNAs, and 37 tRNAs). The overal...
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Aphid gosypii Glover, 1877 is a widely recognized economically important aphid species in the world. We have determined mitochondrial genome of A. gossypii collected in Korean peninsula. The circular mitogenome of A. gossypii is 15,872 bp including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs, and a single control region of 627...
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Riccia fluitans L. (Marchantiales) is an aquatic liverwort usually found in lentic environments. Here, we presented a complete chloroplast genome of R. fluitans (MK645896) which is 121,682 bp long and has four subregions: 81,626 bp of large single copy (LSC) and 20,254 bp of small single copy (SSC) regions are separated by 9,901 bp of inverted repe...
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As a Korean endemic plant, Salix koriyanagi Kimura belongs to the genus Salix L. which is the largest genus of Salicaceae. In this study, we presented a complete chloroplast genome from male individual of S. koriyanagi which is 155,548 bp and has four subregions: 84,415 bp of large single copy (LSC) and 16,125 bp of small single copy (SSC) regions...
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Abeliophyllum distichum Nakai is the only species in Abeliophyllum genus, which is Korean endemic. Ok Hwang 1ho, the first official cultivar of A. distichum., displays that colour of corolla is light yellow (8D and 9D). Here, we completed chloroplast genome of A. distichum cultivar Ok Hwang 1ho to understand genetic diversity of A. distichum cultiv...
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C iComplete chloroplast genome of Coffea arabica of high production individual (HP1) is 155,191 bp long and has four subregions: 85,164 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions, separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, eight rRNAs, and 37 tRNAs). The o...
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We have determined the mitochondrial genome of Chilo suppressalis (Walker, 1863) collected in Korea. The circular mitogenome of C. suppressalis was 15,341 bp including 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNAs, and a single large non-coding region of 622 bp. The base composition was AT-biased (95.4%). Through alignment of t...
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Illicium anisatum L. is a neighbor species of Illicium verum used for making anti-virus vaccine. Here, we completed the chloroplast genome of I. anisatum. Its length is 142,747 bp long and has four subregions: 100,833 bp of large single copy (LSC) and 20,227 bp of small single copy (SSC) regions are separated by 10,844 bp of inverted repeat (IR) in...
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Camellia japonica L. is an ornamental species due to its beautiful red flowers blooming in winter. Here, we completed the chloroplast genome of C. japonica isolated in Soyeonpyeongdo located at the northernmost in South Korea. Its length is 156,971 bp long and has four subregions: 86,673 bp of a large single copy (LSC) and 18,394 bp of small single...
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Rhynchocypris oxycephalus (Sauvage and Dabry de Thiersant, 1874) distributed in East Asia is small cold-water fish. We completed whole mitochondrial genome of R. oxycephalus caught in Korea. Its length is 16,583 bp, which is shorter than those of three mitochondrial genomes from China and Japan. Three hundred ninety seven of 1,278 SNPs and 27 of 44...
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Coffea arabica is major cultivated species of coffee. We selected cold hardiness of C. arabica (named as CH3) based on selection of coffee seeds in Jeju Island, Korea. Here, we presented complete chloroplast genome of cold resistance C. arabica which is 155,192 bp long and has four subregions: 85,163 bp of large single copy (LSC) and 18,137 bp of s...
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Coffea arabica L. taking 70% of world coffee production is also used as an ornamental species. One imported coffee tree from Indonesia near to thirty years ago of which leaf is wrinkled (named as IN1) was chosen to know its genetic background. Here, we presented complete chloroplast genome of Coffea arabica IN1 which is 155,277 bp long and has four...
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Camellia japonica L. usually blooms red flower in winter in Jeju island, Korea, considered a species which should not be planted in the garden. Here, we completed chloroplast genome of C. japonica isolated in Seogwang-ri, Jeju island for comparing that isolated in Wimi-ri, Jeju island. Its length is 156,971 bp long and has four subregions: 86,673 b...
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To study the intraspecific variation of the sea cucumber, Apostichopus japonicus, we sequenced three complete mitochondrial genomes, especially from different body color variants (green, black, and red) of Apostichopus japonicus in Geomum-do, Republic of Korea. The full lengths of green, black, and red sea cucumber mitochondrial genomes are 16,106...
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Ilex integra Thunb. is an ornamental tree distributed in Korea, Taiwan, mid-Southern China, and Japan. To understand the genetic differences between I. integra and I. cornuta, we presented complete chloroplast genome of I. integra, which is 157,548 bp long and has four subregions: 86,935 bp of large single copy (LSC) and 18,426 bp of small single c...
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Ilex cornuta Lindl. is a species distributed in eastern China and Korea, utilized as traditional medical plants as well as horticultural species. Here, we completed chloroplast genome of I. cornuta. Its length is 157,224 bp long and has four subregions: 86,610 bp of large single copy (LSC) and 18,429 bp of small single copy (SSC) regions are separa...
Poster
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GATA transcription factors (TFs) are widespread eukaryotic regulators whose DNA-binding domain is a class IV zinc finger motif (CX2CX17-20CX2C) followed by a basic region. We identified GATA TFs from seven Populus genomes to understand phylogenomic position of Populus GATA TFs. 262 GATA TFs (389 transcripts) from seven Populus genomes were classifi...
Poster
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GATA transcription factors (TFs) are widespread eukaryotic regulators whose DNA-binding domain is a class IV zinc finger motif (CX2CX17–20CX2C) followed by a basic region. We identified GATA TFs from 19 eco-type A. thaliana genomes to understand infra-specific characteristics of A. thaliana GATA TFs. 566 GATA genes (772 GATA TFs) from 19 genomes we...
Poster
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Currently, more than 200 plant species have been sequenced and/or published; however, there is no central repository for plant genome sequences. NCBI genome database, as a general sequence repository, does not contain all published plant genomes with gene models (e.g. Utricularia gibba). Ensembl (Release 37) and Phytozome (v 12.1) are another plant...
Poster
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Owing to Next Generation Sequencing (NGS) technologies. More than 15,000 whole genome sequences have been sequenced till now ranging from bacteria to human. There are several major data archives, such as NCBI, DDBJ, and EBI, for collecting them. These databases serve structured file of genome information, such as fasta and gff3 files, web interface...
Poster
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Owing to next generation sequencing technologies as well as research interests in genome sequences, more than 100 fish species are available in public. However, there is no integrated repository for fish genomes. For example, Ensembl (http://www.ensembl.org/; Release 90) contains around 13 fish genomes, which is smaller number of genomes archived i...
Poster
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In the natural world, no organism exists without interacting with other species, reflecting that interaction is a key to understand species. Many insect species interact with host plants and their natural enemies including parasitoid wasps; for example, aphids destruct cultivated plants over the world through interacting with plants and wraps utili...
Poster
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Genome, defined as a blend of gene and chromosome, is whole nucleotide sequences of one organism. Currently, more than 180 plant genomes have been sequenced and/or published; however, there is no central repository for plant genome sequences. NCBI genome database, as a general sequence repository, does not contain all published plant genomes with g...
Poster
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Coffee is one of favorite drink in the world. The best countries for coffee production in the world are Brazil, Vietnam, and Indonesia. Recently, Coffea canephora which is paternal species of Coffea arabica was successfully sequenced. It presents overall features of coffee genome, however, it is not cultivated species for coffee bean. With the aid...
Poster
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Pseudostellaria longipedicellata S. Lee, K. Heo & S.C Kim is newly identified species in Korea. Because P. longipedicellata shares almost all morphological characters with Pseudostellaria palibiniana (Takeda) Owhi except a pedicel length that expands significantly during flowering and fruiting seasons. To understand P. longipedicellata, we have inv...