Hong Wu’s research while affiliated with South China Agricultural University and other places

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Publications (197)


Transcriptomics and metabolomics analyses of the effects of plant age and organ on caffeic acid derivative accumulation in Echinacea purpurea
  • Article

May 2025

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5 Reads

Plant Physiology and Biochemistry

Jianhao Lin

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Qiao Yang

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Hong Wu


(A) Zanthoxylum nitidum planting base in Yunfu City, Guangdong Province, China. The (B) fruit, (C) leaves, (D) stems, and (E) roots of the Z. nitidum.
(A) Essential oil extraction rates from different parts of Zanthoxylum nitidum on a dry weight basis. Different letters indicate statistically significant differences between samples (p < 0.05). Secretory cavities (white arrows) on the (B) leaves and (C) pericarp of Z. nitidum.
The GC-MS profiles of different parts of Zanthoxylum nitidum.
The components of different parts of Zanthoxylum nitidum (A) heatmap, (B) hierarchical cluster analysis (HCA), and (C) principal component analysis (PCA).
The (A) ferric reducing antioxidant power (FRAP), (B) the total antioxidant capacity of ABTS+ (2,2′-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid)), (C) the DPPH (1,1-diphenyl-2-picrylhydrazyl) radical scavenging activity, and (D) the antioxidant potency composite index (APCI) of different parts of Zanthoxylum nitidum. The different letters indicate significant difference (p < 0.05).
Comparison of Essential Oil Components and In Vitro Antioxidant Activity of Zanthoxylum nitidum from Different Parts
  • Article
  • Full-text available

April 2025

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8 Reads

Zanthoxylum nitidum is a traditional Chinese herb, but limited information is available concerning its composition and pharmacological effects of essential oils from different parts of Z. nitidum. This study examined the composition and in vitro antioxidant activity of essential oils from different parts of Z. nitidum in China. The results indicate that the highest essential oil extraction rate was obtained from the pericarps (0.42%), primarily consisting of caryophyllene oxide (15.33%), nerolidol 2 (14.03%), and spathulenol (9.64%). This was followed by the leaves (0.21%), stems (0.09%), and roots (0.05%), with the highest content in their essential oils being caryophyllene (27.03%), cadina-1(10),4-diene (25.76%), and benzyl benzoate (17.11%), respectively. Hierarchical cluster analysis (HCA) and principal component analysis (PCA) revealed that, compared with the essential oils from stems and leaves, the essential oils from roots and pericarps showed relatively smaller differences and were usually clustered into one category. The leaf essential oil has the highest in vitro antioxidant activity, followed by the root, pericarp, and stem. This study aims to provide a scientific reference for the rational development and utilization of different parts of Z. nitidum, especially the leaf essential oil.

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17-kmer distribution in two Morinda officinalis genomes. (A) Morinda officinalis (cultivated) (B) Morinda officinalis (wild). The dashed line indicates the expected Kmer-peaks.
Circos plots of two Morinda officinalis genomes. (A) Image showing the morphological attributes of cultivated and wild M. officinalis (B) Circos plot of M. officinalis (cultivated) and M. officinalis (wild) genome. Concentric circles from outermost to innermost show (A) chromosomes and megabase values, (B) gene density, (C) GC content, (D) repeat density, (E) LTR density, (F) LTR Copia density, (G) LTR Gypsy density and (H) inter-chromosomal synteny (features B-G are calculated in non-overlapping 500 Kb sliding windows).
Hi-C map of the M. officinalis (cultivated) and M. officinalis (wild). Map showing genome-wide all-by-all interactions. The map shows a high resolution of individual chromosomes that are scaffolded and assembled independently. The heat map colors ranging from light pink to dark red indicate the frequency of Hi-C interaction links from low to high (0–10).
Phylogenetic position of M. officinalis. The phylogenetic tree constructed by IQtree with ‘-b 100’ using 317 single copy orthologues of two Morinda species and eight other representative plant species. The numbers below the middle of each branch represent the bootstrap values.
Chromosome-scale genomes of wild and cultivated Morinda officinalis

March 2025

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19 Reads

Scientific Data

Morinda officinalis is a renowned medicinal and edible plant native to southern China and northern Vietnam. Its dried roots, known as bajitian are extensively used in traditional Chinese medicine to treat various ailments. Driven by the increasing market demand, the wild populations of M. officinalis have been threatened, leading to the surge of cultivated varieties. Here, we present the chromosome-scale genome assemblies of both wild and cultivated M. officinalis, achieved through a combination of nanopore long-read sequencing and Hi-C technology, resulting in high-quality genomes for the wild (423 Mb) and cultivated (425 Mb) M. officinalis, boasting scaffold N50 values of 5.91 Mb and 10.99 Mb, respectively. Additionally, we predicted 31,308 and 29,528 protein-coding genes in wild and cultivated M. officinalis, respectively. Approximately 96.3% and 97.8% of the assembled sequences were anchored to 11 pseudo-chromosomes for the wild and cultivated genomes. The high-quality chromosome-scale genomes of M. officinalis could serve as a valuable resource for understanding the genetic basis of medicinal trait variations, improving cultivation practices, and conserving this ecologically and economically important species.


Evaluation of the authenticity of Citri Grandis Exocarpium based on metabolomics and transcriptomics

March 2025

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10 Reads

Medicinal Plant Biology

Citri Grandis Exocarpium (CGE) is derived from the immature or nearly mature dried outer peel of Citrus grandis 'Tomentosa' (Huazhou pomelo) or C. grandis (L.) Osbeck (pomelo). CGE is a traditional medicinal herb from Guangdong Province (China) that primarily contains active substances, such as flavonoids, with expectorant, antitussive, and anti-inflammatory properties. However, the differences in quality and the mechanisms underlying these differences between the two plant sources specified in the Chinese Pharmacopoeia have not been fully elucidated. For the first time, this study systematically analyzed Huazhou pomelo (C. grandis 'Tomentosa' ) from its authentic production region and Sanhong pomelo (C. grandis (L.) Osbeck) from Meizhou by using an integrated analysis of metabolomics and transcriptomics. The results showed that the flavonoid components in both extracts were generally consistent, indicating that both pomelos could serve as sources of CGE. However, the content differed significantly. Flavonoids related to medicinal effects, such as naringin and hesperidin, were significantly more abundant in Huazhou pomelo than in Sanhong pomelo, with compounds such as 5-demethylnobiletin detected only in Huazhou pomelo. The integrative metabolomics and transcriptomics analysis identified 11 key structural genes and transcription factors potentially involved in flavonoid biosynthesis, providing candidate targets for functional validation. This study uncovered the molecular basis for Huazhou pomelo being superior in quality to Sanhong pomelo as an authentic medicinal material for CGE and provided scientific evidence for optimizing quality standards and enhancing its commercial value. Furthermore, this study provided a theoretical foundation for further functional research.


Assessment of quality in volatile oil from three basic sources of Xinyi from Hubei by anatomy, GC-MS, and chemometric methods

February 2025

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29 Reads

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1 Citation

Xinyi” (Magnolia biondii Pampan., Magnolia denudata Desr., and Magnolia sprengeri Pampan.) is a traditional Chinese medicine listed in the Pharmacopoeia of the People’s Republic of China. “Xinyi” has anti-inflammatory, anti-allergic, antioxidant, and antibacterial effects, and has significant curative effects in the treatment of acute and chronic rhinitis, allergic rhinitis, and other rhinitis symptoms. However, comparative quality assessments of these three species are scarce. This study investigated the variations in the volatile oil content and composition in the flower buds of M. biondii, M. denudata, and M. sprengeri using the gas chromatography–mass spectrometry (GC–MS) and the microscopic analysis at different growth stages. This study indicated the following findings. (1) The volatile oil levels varied among the species, with M. biondii, M. denudata, and M. sprengeri peaking, respectively. In addition, the cell density was positively correlated with the oil deposition. (2) The content of 1,8-Cineole varied significantly, where M. biondii exhibited the high levels at 14.50% at stage 4 and 16.40% at stage 5; M. denudata peaked at 17.87% at stage 5; and M. sprengeri was 1.07% at stage 3. Moreover, M. biondii and M. denudata from Hubei exceeded the Pharmacopoeia’s 1% standard, whereas M. sprengeri did not. These findings underscore the need to improve the herb production standards and provide valuable data for assessing the therapeutic potential of these “Xinyi” species.





Citations (67)


... The alkaloid camptothecin, found in the roots, bark, and fruits of the tree, has demonstrated effectiveness in treating leukemia, cancer, diabetes, and cardiovascular habitats. Since MaxEnt has low requirements for distribution data and provides stable and reliable predictions, it has been widely applied in species habitat suitability assessments and studies of species' spatiotemporal distribution patterns [15][16][17][18]. ...

Reference:

Insight into the Influence of Ecological Factors on Shaping Distribution Patterns of Camptotheca acuminata for Conservation and Management
The combined effects of climate, soil, and rhizospheric microorganisms determine the quality and suitable production zones of Stellaria dichotoma L. var. lanceolata Bge. in China

... Its dried roots are a traditional Chinese medicinal material and have been included in various editions of the Pharmacopoeia of the People's Republic of China (PPRC). They possess properties such as anti-inflammatory, analgesic, antioxidant, antibacterial, and antitumor effects [3][4][5][6][7]. Currently, Z. nitidum is widely applied in the pharmaceutical industry as well as in daily-use products and cosmetics [4]. ...

A comparative analysis of the composition of the primary bioactive molecules, antioxidant activities, and anti-inflammation abilities of the roots of Zanthoxylum nitidum harvested at different years of cultivation
  • Citing Article
  • December 2024

Industrial Crops and Products

... Over evolutionary time, plants have developed a diverse array of defence mechanisms to effectively counteract pathogen invasion. Among these, the host-produced oxidative burst, characterised by the production of hydrogen peroxide (H 2 O 2 ) mediated by NADPH oxidases (also known as Respiratory Burst Oxidase Homologues, RBOHs), is widely acknowledged as a key generalised defence mechanism against pathogen attack in plants (Singh et al. 2021;Ma et al. 2025). Plant cell surfacelocalised pattern recognition receptors (PRRs) detect pathogenassociated molecular patterns (PAMPs) to perceive pathogen invasion and activate RBOHs for the production of apoplastic H 2 O 2 . ...

The OXI1 kinase regulates plant immunity by linking microbial pattern-induced ROS burst to MAPK activation
  • Citing Article
  • November 2024

The Plant Cell

... However, the chemical composition of C. cassia EO differed from that reported by Vu and Ho 35 ; Yang et al. 46 and Ma et al. 47 where the major compound was the trans-cinnamaldehyde with a total percentage of 99.24%, 74.60% and 75.65%, respectively. Recent research conducted by Li et al. 48 reported that the variation in climate conditions has a significant influence on the phytochemical profile and the percentage of C. cassia EO (the percentage of trans-cinnamaldehyde varied in 31 samples collected from different habitat in the same area from China). Also, Thinh et al. 49 revealed that the various extraction techniques such as hydro-distillation, steam distillation, and microwave-assisted hydro-distillation has a significant influence the phytochemical profile of EO. ...

Investigation of the impact of diverse climate conditions on the cultivation suitability of Cinnamomum cassia using the MaxEnt model, HPLC and chemometric methods in China

... Notably, in flavonoid biosynthesis, type IV CHI interacts with chalcone synthase (CHS) via protein-protein interactions, enhancing THC production while reducing CTAL formation (Waki et al., 2020;Wolf-Saxon et al., 2023). Researchers typically further validate CHIL based on this biological function (Xu et al., 2022;Lewis et al., 2024;Zhang et al., 2024). Due to the lack of key active sites, type V CHI is presumed to lack chalcone isomerase activity. ...

CcCHIL, a type IV chalcone isomerase that can improve (2S)-naringenin production in Saccharomyces cerevisiae
  • Citing Article
  • September 2024

Food and Bioproducts Processing

... The recovery of a choromosome-scale Citrus reticulata cv. Chachiensis genome enabled the identification of a putative caffeic acid O-methyltransferase, which help reveal the polymethoxylated flavonoid biosynthetic pathway [81]. ...

An integrated multi-omics approach reveals polymethoxylated flavonoid biosynthesis in Citrus reticulata cv. Chachiensis

... Microbial interactions can enhance plant disease resistance and stress tolerance, which may indirectly promote the production of secondary metabolites. These interactions also regulate secondary metabolite synthesis by influencing plant growth, directly modulating metabolic pathways, or altering the plant's endogenous environment [56,68] . For instance, studies have found that endophytic fungi can induce D. officinale to accumulate polysaccharides and flavonoids, thereby enhancing the efficiency of carbon assimilation and turnover [49,52,68]. ...

Regulation of secondary metabolites accumulation in medicinal plants by rhizospheric and endophytic microorganisms

Medicinal Plant Biology

... Additionally, relative humidity exhibited a significant positive relationship with trans-cinnamaldehyde, indicating that higher humidity also promotes the accumulation of EOs and trans-cinnamaldehyde. Variations in oil composition may also be associated with fungal pathogen attacks, particularly during rainy months [32]. Recently, Ye et al. [35] reported that cinnamyl-CoA reductase is involved in trans-cinnamaldehyde biosynthesis in C. cassia. Understanding how environmental factors such as temperature influence trans-cinnamaldehyde accumulation and applying this knowledge to production holds significant potential for various industries. ...

Identification of a cinnamoyl-CoA reductase from Cinnamomum cassia involved in trans-cinnamaldehyde biosynthesis

Planta

... Medicinal plants are rich sources of valuable natural compounds with promising therapeutic potential, which play a crucial role in traditional and evidence-based medicine 1 . The gradual development of more advanced instrumental extraction techniques and analytical methods has allowed for the comprehensive identification of numerous bioactive plant metabolites 2 . ...

Special issue: Manipulation/regulation of secondary metabolites in medicinal plants
  • Citing Article
  • March 2024

Plant Physiology and Biochemistry

... Its dried roots are a traditional Chinese medicinal material and have been included in various editions of the Pharmacopoeia of the People's Republic of China (PPRC). They possess properties such as anti-inflammatory, analgesic, antioxidant, antibacterial, and antitumor effects [3][4][5][6][7]. Currently, Z. nitidum is widely applied in the pharmaceutical industry as well as in daily-use products and cosmetics [4]. ...

Comparison of the bioactive components and antioxidant activities of wild-type Zanthoxylum nitidum roots from various regions of Southern China
  • Citing Article
  • November 2023