Harm Bartholomeus’s research while affiliated with Wageningen University & Research and other places

The ecosystem services offered by pollinators are vital for supporting agriculture and ecosystem functioning, with bees standing out as especially valuable contributors among these insects. Threats such as habitat fragmentation, intensive agriculture, and climate change are contributing to the decline of natural bee populations. Remote sensing could be a useful tool to identify sites of high diversity before investing into more expensive field survey. In this study, the ability of Unoccupied Aerial Vehicles (UAV) images to estimate biodiversity at a local scale has been assessed while testing the concept of the Height Variation Hypothesis (HVH). This hypothesis states that the higher the vegetation height heterogeneity (HH) measured by remote sensing information, the higher the vegetation vertical complexity and the associated species diversity. In this study, the concept has been further developed to understand if vegetation HH can also be considered a proxy for bee diversity and abundance. We tested this approach in 30 grasslands in the South of the Netherlands, where an intensive field data campaign (collection of flower and bee diversity and abundance) was carried out in 2021, along with a UAV campaign (collection of true color-RGB-images at high spatial resolution). Canopy Height Models (CHM) of the grasslands were derived using the photogrammetry technique "Structure from Motion" (SfM) with horizontal resolution (spatial) of 10 cm, 25 cm, and 50 cm. The accuracy of the CHM derived from UAV photogrammetry was assessed by comparing them through linear regression against local CHM LiDAR (Light Detection and Ranging) data derived from an Airborne Laser Scanner campaign completed in 2020/2021, yielding an R 2 of 0.71. Subsequently, the HH assessed on the CHMs at the three spatial resolutions, using four different heterogeneity indices (Rao's Q, Coefficient of Variation, Berger-Parker index, and Simpson's D index), was correlated with the ground-based flower and bee diversity and bee abundance data. The Rao's Q index was the most effective heterogeneity index, reaching high correlations with the ground-based data (0.44 for flower diversity, 0.47 for bee diversity, and 0.34 for bee abundance). Interestingly, the correlations were not significantly influenced by the spatial resolution of the CHM derived from UAV photogrammetry. OPEN

The recent success of large language models and AI chatbots such as ChatGPT in various knowledge domains has a severe impact on teaching and learning Geography and GIScience. The underlying revolution is often compared to the introduction of pocket calculators, suggesting analogous adaptations that prioritize higher-level skills over other learning content. However, using ChatGPT can be fraudulent because it threatens the validity of assessments. The success of such a strategy therefore rests on the assumption that lower-level learning goals are substitutable by AI, and supervision and assessments can be refocused on higher-level goals. Based on a preliminary survey on ChatGPT's quality in answering questions in Geography and GIScience, we demonstrate that this assumption might be fairly naive, and effective control in assessments and supervision is required.

The concept of fire resilience has become increasingly relevant as society looks to understand and respond to recent wildfire events. In particular, the idea of a 'fire resilient landscape' is one which has been utilised to explore how society can coexist with wildfires. However, the concept of fire resilient landscapes has often been approached in silos, either from an environmental or social perspective; no integrated definition exists. Based on a synthesis of literature and a survey of scientists and practitioners, we propose to define a fire resilient landscape as 'a socio-ecological system that accepts the presence of fire, whilst preventing significant losses through landscape management, community engagement and effective recovery.' This common definition could help guide policy surrounding fire resilient landscapes, and exemplify how such landscapes could be initiated in practice. We explore the applicability of the proposed definition in both Mediterranean and temperate Europe.

Introduction 3D semantic segmentation of plant point clouds is an important step towards automatic plant phenotyping and crop modeling. Since traditional hand-designed methods for point-cloud processing face challenges in generalisation, current methods are based on deep neural network that learn to perform the 3D segmentation based on training data. However, these methods require a large annotated training set to perform well. Especially for 3D semantic segmentation, the collection of training data is highly labour intensitive and time consuming. Data augmentation has been shown to improve training on small training sets. However, it is unclear which data-augmentation methods are effective for 3D plant-part segmentation. Methods In the proposed work, five novel data-augmentation methods (global cropping, brightness adjustment, leaf translation, leaf rotation, and leaf crossover) were proposed and compared to five existing methods (online down sampling, global jittering, global scaling, global rotation, and global translation). The methods were applied to PointNet++ for 3D semantic segmentation of the point clouds of three cultivars of tomato plants (Merlice, Brioso, and Gardener Delight). The point clouds were segmented into soil base, stick, stemwork, and other bio-structures. Results and disccusion Among the data augmentation methods being proposed in this paper, leaf crossover indicated the most promising result which outperformed the existing ones. Leaf rotation (around Z axis), leaf translation, and cropping also performed well on the 3D tomato plant point clouds, which outperformed most of the existing work apart from global jittering. The proposed 3D data augmentation approaches significantly improve the overfitting caused by the limited training data. The improved plant-part segmentation further enables a more accurate reconstruction of the plant architecture.

Background Habitat structure strongly influences niche differentiation, facilitates predator avoidance, and drives species-specific foraging strategies of bats. Vegetation structure is also a strong driver of echolocation call characteristics. The fine-scale assessment of how bats utilise such structures in their natural habitat is instrumental in understanding how habitat composition shapes flight- and acoustic behaviour. However, it is notoriously difficult to study their species-habitat relationship in situ. Methods Here, we describe a methodology combining Light Detection and Ranging (LiDAR) to characterise three-dimensional vegetation structure and acoustic tracking to map bat behaviour. This makes it possible to study fine-scale use of habitat by bats, which is essential to understand spatial niche segregation in bats. Bats were acoustically tracked with microphone arrays and bat calls were classified to bat guild using automated identification. We did this in multiple LiDAR scanned vegetation plots in forest edge habitat. The datasets were spatially aligned to calculate the distance between bats’ positions and vegetation structures. Results Our results are a proof of concept of combining LiDAR with acoustic tracking. Although it entails challenges with combining mass-volumes of fine-scale bat movements and vegetation information, we show the feasibility and potential of combining those two methods through two case studies. The first one shows stereotyped flight patterns of pipistrelles around tree trunks, while the second one presents the distance that bats keep to the vegetation in the presence of artificial light. Conclusion By combining bat guild specific spatial behaviour with precise information on vegetation structure, the bat guild specific response to habitat characteristics can be studied in great detail. This opens up the possibility to address yet unanswered questions on bat behaviour, such as niche segregation or response to abiotic factors in interaction with natural vegetation. This combination of techniques can also pave the way for other applications linking movement patterns of other vocalizing animals and 3D space reconstruction.

Unoccupied aerial vehicle laser scanning (UAV-LS) has been increasingly used for forest structure assessment in recent years due to the potential to directly estimate individual tree attributes and availability of commercial solutions. However, standardised procedures for campaign planning are still largely missing. This study investigated scanner properties and flight planning to provide recommendations on minimising forest canopy occlusion and thereby maximise exploration of canopy volume. A flight campaign involving two UAV-LS systems was conducted over a dense, wet tropical forest at the Paracou research station (French Guiana). Four experiments on scanner properties and flight planning were conducted, analysed and recommendations derived. First, the scanner pulse repetition rate (PRR) should be at least 100kHz per 1ms−1 flight speed based on 360° FOV for exploration of middle canopy strata (5m to 20m). Higher PRR are beneficial for exploration of lower canopy (

Calibration and validation of aboveground biomass (AGB) (AGB) products retrieved from satellite-borne sensors require accurate AGB estimates across hectare scales (1 to 100 ha). Recent studies recommend making use of non-destructive terrestrial laser scanning (TLS) based techniques for individual tree AGB estimation that provide unbiased AGB predictors. However, applying these techniques across large sites and landscapes remains logistically challenging. Unoccupied aerial vehicle laser scanning (UAV-LS) has the potential to address this through the collection of high density point clouds across many hectares, but estimation of individual tree AGB based on these data has been challenging so far, especially in dense tropical canopies. In this study, we investigated how TLS and UAV-LS can be used for this purpose by testing different modelling strategies with data availability and modelling framework requirements. The study included data from four forested sites across three biomes: temperate, wet tropical, and tropical savanna. At each site, coincident TLS and UAV-LS campaigns were conducted. Diameter at breast height (DBH) and tree height were estimated from TLS point clouds. Individual tree AGB was estimated for ≥170 trees per site based on TLS tree point clouds and quantitative structure modelling (QSM), and treated as the best available, non-destructive estimate of AGB in the absence of direct, destructive measurements. Individual trees were automatically segmented from the UAV-LS point clouds using a shortest-path algorithm on the full 3D point cloud. Predictions were evaluated in terms of individual tree root mean square error (RMSE) and population bias, the latter being the absolute difference between total tree sample population TLS QSM estimated AGB and predicted AGB. The application of global allometric scaling models (ASM) at local scale and across data modalities, i.e., field-inventory and light detection and ranging LiDAR metrics, resulted in individual tree prediction errors in the range of reported studies, but relatively high population bias. The use of adjustment factors should be considered to translate between data modalities. When calibrating local models, DBH was confirmed as a strong predictor of AGB, and useful when scaling AGB estimates with field inventories. The combination of UAV-LS derived tree metrics with non-parametric modelling generally produced high individual tree RMSE, but very low population bias of ≤5% across sites starting from 55 training samples. UAV-LS has the potential to scale AGB estimates across hectares with reduced fieldwork time. Overall, this study contributes to the exploitation of TLS and UAV-LS for hectare scale, non-destructive AGB estimation relevant for the calibration and validation of space-borne missions targeting AGB estimation.