Haowen Xu’s research while affiliated with Wenzhou Medical University and other places

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Publications (7)


Ubiquitin‐specific protease 25 (USP25) is down‐regulated in myocardial ischemia/reperfusion injury (MI/RI) myocardium tissues. (A) RNA transcriptome sequencing was used to detect mRNA expression of UPS family members of deubiquitinating enzymes (DUBs) during MI/RI. RNA transcriptome sequencing was performed on Sham (n = 3) and I/R‐induced (n = 3) mice heart samples, respectively. We use log2 of the fold change as the source of data for the x‐axis and −log10 of the p value as the source of data for the y‐axis. Fold change > 1.5 times and p ˂ .05 indicate statistically significant. Myocardial tissue in mice was subjected to 30 min of ischaemia, followed by a subsequent period of 4 h of reperfusion to induce I/R injury. Neonatal rat primary cardiomyocytes (NRPCs) were cultured in glucose‐ and foetal bovine serum (FBS)‐deprived DMEM under hypoxic conditions for a duration of 4 h to elicit hypoxic injury. Subsequently, the medium was replaced with high‐glucose media containing 10% FBS, after which the cardiomyocytes were incubated under normoxic conditions for an additional 6 h to induce hypoxia/reoxygenation (H/R) injury, compared to the sham group. (B) Myocardial tissue in mice was subjected to 30 min of ischaemia, followed by a subsequent period of 4 h of reperfusion to induce I/R injury. NRPCs were cultured in glucose‐ and FBS‐deprived DMEM under hypoxic conditions for a duration of 4 h to elicit hypoxic injury. Subsequently, the medium was replaced with high‐glucose media containing 10% FBS, after which the cardiomyocytes were incubated under normoxic conditions for an additional 6 h to induce H/R injury. Real‐time quantitative polymerase chain reaction (RT‐qPCR) analysis of the USP25 mRNA expression that was differentially expressed in RNA transcriptome sequencing induced by cardiomyocyte H/R injury and myocardial I/R injury (n = 3). (C) RT‐qPCR analysis of the mRNA expression of USP25 in myocardial tissues of ischaemic cardiomyopathy patients and normal heart tissues (n = 3). (D and E) Representative western blot (D) and densitometric quantification (E) for USP25 in I/R‐induced heart tissue in the area of myocardial injury at different reperfusion time points and normal heart tissues in mice (n = 6). (F and G) Representative western blot (F) and densitometric quantification (G) for USP25 in H/R‐induced NRPCs at different reoxygenation time points and normoxia‐treated NRPCs (n = 3). Significance is defined as *p < .05, **p < .01, ****p < .0001.
Ubiquitin‐specific protease 25 (USP25) deficiency exacerbates myocardial ischemia/reperfusion injury (MI/RI) in mice. The whole‐body USP25 knockout (USP25−/−) mice and wild‐type littermates were subject to acute MI/RI (30 min ischemia followed by 4 h reperfusion) and sham operation. (A–C) Representative images of sections stained with Evans Blue and 2,3,5‐triphenyltetrazolium chloride (TTC) (A) and quantitative data for area at risk (AAR) and left ventricular (LV) area (B) and infarcted area size (INF) and AAR (C). (D–F) The content of creatine kinase (CK)‐MB (D), lactate dehydrogenase (LDH) (E) and cTnI (F) in serum from each group. (G and H) Representative images of sections stained with TUNEL in the infarcted area (red: positive cells; scale bar, 1 mm and 100 µm; G) and quantitative data (H). Significance is defined as *p < .05, **p < .01, ***p < .001, ****p < .0001. The abbreviation ‘NS’ denotes no statistical significance (p > .05).
Ubiquitin‐specific protease 25 (USP25) deficiency aggravates ischemia/reperfusion (I/R)‐induced cardiac remodelling. The whole‐body USP25 knockout (USP25−/−) mice and wild‐type littermates were subject to chronic myocardial I/R injury (MI/RI) (30 min ischaemia followed by 2‐week reperfusion) and sham operation. (A) Representative M‐mode echocardiographic images from each group in mice. (B and C) Ejection fraction (EF, B) and fractional shortening (FS, C). (D) Representative images of Masson staining of heart sections (scale bar, 1 mm and 50 µm). (E and F) Representative images of sections stained with TUNEL in the infarcted area (green: positive cells; scale bar, 100 µm; E) and quantitative data (F). (G and H) Representative western blot results of Col‐1 and TGF‐β in heart tissues (G) and quantitative data (H). (I) The content of ANP in serum from each group. Significance is defined as *p < .05, **p < .01, ***p < .001, ****p < .0001. The abbreviation ‘NS’ denotes no statistical significance (p > .05).
Identification of NLRP3 as the potential substrate protein of ubiquitin‐specific protease 25 (USP25) in ischemia/reperfusion (I/R)‐induced cardiomyocyte injury. (A) The workflow of USP25 substrate screening. Neonatal rat primary cardiomyocytes (NRPCs) were transfected with Flag‐USP25 plasmids, followed by hypoxia/reoxygenation (H/R) stimulation. Anti‐Flag and protein G‐Sepharose beads were added to the cell samples for coimmunoprecipitation (Co‐IP). The binding proteins were extracted, digested to peptide, and then performed for LC–MS/MS analysis. (B) Two‐dimensional (2D) plot with log10 signal intensity of the quantified proteins on the y axis (revealing the enrichment in Flag‐USP25‐IP) and molecular weight (MW) of protein on the x axis. (C) The table shows the candidate substrates of USP25 screened by the LC–MS/MS. (D and E) Co‐IP of endogenous (D) and exogenous (E) USP25 and NLRP3 in primary cardiomyocytes treated with or without H/R injury. Endogenous USP25 was immunoprecipitated by anti‐USP25 antibody. Exogenous USP25 was immunoprecipitated by anti‐Flag antibody. IgG, immunoglobulin G. (F) Co‐IP of USP25 and NLRP3 in NIH/3T3 cells co‐transfected with Flag‐USP25 and His‐NLRP3 plasmids. Exogenous NLRP3 was immunoprecipitated by anti‐His antibody. (G) Schematic illustration of the NLRP3 domain deletion construct used in Figure 5I. (H) Schematic illustration of the USP25 domain deletion construct used in Figure 5J. (I) Co‐IP of wt‐NLRP3, mut‐NLRP3 and USP25 in NIH/3T3 cells co‐transfected with overexpression plasmids of HA‐His‐wt‐NLRP3, HA‐His‐mut‐NLRP3 and Flag‐USP25. Exogenous normal or mutated NLRP3 was immunoprecipitated by anti‐Flag antibody. (J) Co‐IP of wt‐USP25, mut‐USP25 and NLRP3 in NIH/3T3 cells co‐transfected with overexpression plasmids of Flag‐wt‐USP25, Flag‐mut‐USP25 and His‐NLRP3. Exogenous normal or mutated USP25 was immunoprecipitated by anti‐Flag antibody. IgG, immunoglobulin G.
Ubiquitin‐specific protease 25 (USP25) negatively regulates NLRP3 activity both in vitro and in vivo. (A and B) Representative western blot for USP25 and NLRP3 in neonatal rat primary cardiomyocytes (NRPCs) transfected with overexpression plasmids of Flag‐USP25 (A, n = 3) and ischaemia/reperfusion (I/R)‐induced heart tissues from wild‐type mice and USP25−/− mice (B, n = 6). (C and D) Co‐immunoprecipitation of endogenous ASC and NLRP3 in NRPCs treated with or without LPS/Nig stimulation (C) and I/R‐induced heart tissues from wild‐type mice and USP25−/− mice (D). Endogenous ASC was immunoprecipitated by using anti‐ASC antibody. NRPCs were subject to 1 µg/mL LPS for 6 h for priming, followed by stimulating with 10 µM Nigericin (Nig) for 30 min after transfection with plasmids. Wild‐type mice and USP25−/− mice were subject to 30 min ischaemia followed by 4 h reperfusion. (E and F) Immunofluorescence staining of ASC in NRPCs. ASC specks were detected by immunostaining using anti‐ASC antibody, and cells were counter‐stained with nuclei‐staining DAPI (E). The histogram quantitates the percentage of cells that exhibit ASC speck formation (F) (scale bar, 20 µm). (G) Co‐immunoprecipitation of ASC in chemically cross‐linked NP‐40 insoluble fractions and in NP‐40‐soluble fractions from cell lysates of NRPCs. (H and I) The release of lactate dehydrogenase (LDH) (H) and IL‐1β (I) in culture medium. NRPCs were subject to hypoxia/reoxygenation (H/R) injury (4 h hypoxia followed by 6 h reoxygenation) after transfection with plasmids. (J) Cell viability of NRPCs. (K and L) Representative western blot results of Cleaved Caspase‐1 and gasdermin D (GSDMD)‐N in NRPCs (K) and quantitative data (L). (M and N) Representative western blot results of Cleaved Caspase‐1 and GSDMD‐N in mouse myocardial tissues (M) and quantitative data (N). Significance is defined as *p < .05, **p < .01, ****p < .0001. The abbreviation ‘NS’ denotes no statistical significance (p > .05).

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Ubiquitin‐specific protease 25 improves myocardial ischemia–reperfusion injury by deubiquitinating NLRP3 and negatively regulating NLRP3 inflammasome activity in cardiomyocytes
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  • Full-text available

February 2025

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11 Reads

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Diyun Xu

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Lingfeng Zhong

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Background Myocardial ischemia/reperfusion injury (MI/RI) restricts the effect of myocardial reperfusion therapy and lacks effective prevention and treatment methods. Deubiquitinating enzymes (DUBs), especially members of the ubiquitin‐specific protease (USP) family of DUBs, are key proteins in the ubiquitination modification process and play a vital role in MI/RI. Therefore, we aimed to investigate the role of USP25, as a member of the USP family, in MI/RI and its molecular mechanism. Methods Transcriptome sequencing was applied to evaluate the differential expression of USP families during hypoxia/reoxygenation (H/R) and validated in human and mouse heart samples and cardiomyocytes by performing quantitative polymerase chain reaction. Wild‐type or USP25−/− mice were used to develop the MI/RI model. Co‐immunoprecipitation (Co‐IP) combined with liquid chromatography–tandem mass spectrometry analysis was used to screen the potential substrate protein of USP25 in H/R‐induced cardiomyocyte injury. TUNEL and Hoechst/propidium iodide staining and western blot were used to detect the level of pyroptosis. In addition, cardiomyocyte‐specific USP25 overexpression in NLRP3−/− mice with AAV9 vectors was used to validate the biological function of USP25 and NLRP3 interaction. Results We found that the expression level of USP25 was significantly decreased in I/R‐induced mouse heart tissues and primary cardiomyocytes in a time‐dependent manner. USP25 deficiency exacerbated MI/RI and aggravated I/R‐induced cardiac remodelling in mice. Mechanistically, USP25 directly binds to NLRP3 protein and K63‐linkedly deubiquitinates NLRP3 at residue K243 via its active site C178, thus hindering NLRP3–ASC interaction and ASC oligomerization to inhibit NLRP3 activation and pyroptosis in cardiomyocytes. We further showed that the overexpression of USP25 in cardiomyocytes ameliorated MI/RI in mice, whereas this protective effect disappeared when NLRP3 is knocked out. Conclusions Our study demonstrated that USP25 ameliorates MI/RI by regulating NLRP3 activation and its mediated pyroptosis. This finding extends the protective role of USP25 in cardiovascular disease and provides an experimental basis for future USP25‐based drug development for the treatment of MI/RI. Key points The deubiquitinating enzyme USP25 was down‐regulated both in myocardial ischemia/reperfusion injury (MI/RI) myocardium tissues. The deficiency of USP25 worsened exacerbated MI/RI in mice, whereas the overexpression of USP25 in cardiomyocytes mitigated this pathological phenotype. USP25 directly interacts with the NLRP3 protein and deubiquitinates it via K63 linkage at residue K243 through its active site C178, thus affecting NLRP3‐ASC interaction and ASC oligomerization to inhibit NLRP3 activation and pyroptosis in cardiomyocytes.

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Ergolide covalently binds NLRP3 and inhibits NLRP3 inflammasome-mediated pyroptosis

May 2023

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16 Reads

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12 Citations

International Immunopharmacology

Background: NLR family pyrin domain-containing 3 (NLRP3)-mediated pyroptosis plays a key role in various acute and chronic inflammatory diseases. Targeted inhibition of NLRP3-mediated pyroptosis may be a potential therapeutic strategy for various inflammatory diseases. Ergolide (ERG) is a sesquiterpene lactone natural product derived from the traditional Chinese medicinal herb, Inula britannica. ERG has been shown to have anti-inflammatory and anti-cancer activities, but the target is remains unknown. Hypothesis/purpose: This study performed an in-depth investigation of the anti-inflammatory mechanism of ERG in NLRP3-mediated pyroptosis and NLPR3 inflammasome related sepsis and acute lung injury model. Methods: ELISA and Western blot were used to determine the IL-1β and P20 levels. Co-immunoprecipitation assays were used to detect the interaction between proteins. Drug affinity response target stability (DARTS) assays were used to explore the potential target of ERG. C57BL/6J mice were intraperitoneally injected with E. coli DH5α (2 × 109 CFU/mouse) to establish a sepsis model. Acute lung injury was induced by intratracheal administrationof lipopolysaccharide in wild-type mice and NLRP3 knockout mice with or without ERG treatment. Results: We showed that ERG is an efficient inhibitor of NLRP3-mediated pyroptosis in the first and second signals of NLRP3 inflammasome activation. Furthermore, we demonstrated that ERG irreversibly bound to the NACHT domain of NLRP3 to prevent the assembly and activation of the NLRP3 inflammasome. ERG remarkably improved the survival rate of wild-type septic mice. In lipopolysaccharide-induced acute lung injury model, ERG alleviated acute lung injury of wild-type mice but not NLRP3 knockout mice. Conclusion: Our results revealed that the anti-pyroptosis effect of ERG are dependent on NLRP3 and NLRP3 NACHT domain is ERG's direct target. Therefore, ERG can serve as a precursor drug for the development of novel NLRP3 inhibitors to treat NLRP3 inflammasome mediated inflammatory diseases.


Tanshinone IIA analogue 15a inhibits NLRP3-mediated inflammation by activating mitophagy in macrophages to alleviate acute tubular necrosis

March 2023

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11 Reads

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2 Citations

International Immunopharmacology

Background: Acute tubular necrosis (ATN) is a common type of acute renal failure. Recent studies have shown that NOD-like receptor family pyrin domain-containing 3 (NLRP3) inflammasome-mediated pyroptosis in macrophages plays a crucial role in the progression of ATN. Previously, we synthesized an anti-inflammatory compound 15a based on Tanshinone IIA (Tan IIA). In the present study, we found that compound 15a exhibited a greater inhibitory effect on NLRP3-mediated pyroptosis than Tan IIA in vitro. Methods: C57BL/6 and NLRP3-knockout (NLRP3-KO) mice were intraperitoneally injected with LPS or folic acid (FA) to develop ATN. In vitro, bone marrow-derived macrophages (BMDMs) were treated with LPS for 3 h and then treated with ATP for 0.5 h. Results: We explored the mechanism by which compound 15a inhibited NLRP3 inflammasome in BMDMs as well as its renal protective effect against ATN in mice. We found that compound 15a exhibited a protective effect on mitochondria and reduced the production of mitochondrial reactive oxygen species (mtROS). Moreover, we revealed that compound 15a remarkably reduced the production of mtROS by promoting mitophagy, which resulted in the inhibition of NLRP3 inflammasome to alleviates ATN in mice. Conclusion: In summary, compound 15a inhibited NLRP3-mediated inflammation by activating mitophagy in macrophages to alleviate ATN. Our results identified compound 15a as a promising candidate for the treatment of NLRP3-driven ATN.


Doublecortin-like kinase 1 activates NF-κB to induce inflammatory responses by binding directly to IKKβ

March 2023

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53 Reads

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9 Citations

Cell Death and Differentiation

Doublecortin-like kinase 1 (DCLK1), a microtubule-associated protein kinase, is involved in neurogenesis, and its levels are elevated in various human cancers. Recent studies suggest that DCLK1 may relate to inflammatory responses in the mouse model of colitis. However, cellular pathways engaged by DCLK1, and potential substrates of the kinase remain undefined. To understand how DCLK1 regulates inflammatory responses, we utilized the well-established lipopolysaccharide (LPS)-stimulated macrophages and mouse model. Through a range of macrophage-based and cell-free platforms, we discovered that DCLK1 binds directly with the inhibitor of κB kinase β (IKKβ) and induces IKKβ phosphorylation on Ser177/181 to initiate nuclear factor-κB (NF-κB) pathway. Deficiency in DCLK1, achieved by silencing or through pharmacological inhibition, prevented LPS-induced NF-κB activation and cytokine production in macrophages. We further show that mice with myeloid-specific DCLK1 knockout or DCLK1 inhibitor treatment are protected against LPS-induced acute lung injury and septic death. Our studies report a novel functional role of macrophage DCLK1 as a direct IKKβ regulator in inflammatory signaling and suggest targeted therapy against DCLK1 for inflammatory diseases.


Discovery of alantolactone as a naturally occurring NLRP3 inhibitor to alleviate NLRP3‐driven inflammatory diseases in mice

February 2023

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104 Reads

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19 Citations

Background and Purpose The NLR family pyrin domain‐containing 3 (NLRP3) inflammasome is activated in many inflammatory conditions. So far, no low MW compounds inhibiting NLRP3 have entered clinical use. Identification of naturally occurring NLRP3 inhibitors may be beneficial to the design and development of compounds targeting NLRP3. Alantolactone is a phytochemical from a traditional Chinese medicinal plant with anti‐inflammatory activity, but its precise target remains unclear. Experimental Approach A bank of phytochemicals was screened for inhibitors of NLRP3‐driven production of IL‐1β in cultures of bone‐marrow‐derived macrophages from female C57BL/6 mice. Models of gouty arthritis and acute lung injury in male C57BL/6J mice were used to determine the in vivo effects of the most potent compound. Key Results Among the 150 compounds screened in vitro, alantolactone exhibited the highest inhibitory activity against LPS + ATP‐induced production of IL‐1β in macrophages, suppressing IL‐1β secretion, caspase‐1 activation and pyroptosis. Alantolactone directly bound to the NACHT domain of NLRP3 to inhibit activation and assembly of NLRP3 inflammasomes. Molecular simulation analysis suggested that Arg335 in NLRP3 was a critical residue for alantolactone binding, leading to suppression of NLRP3–NEK7 interaction. In vivo studies confirmed significant alleviation by alantolactone of two NLRP3‐driven inflammatory conditions, acute lung injury and gouty arthritis. Conclusion and Implications The phytochemical alantolactone inhibited activity of NLRP3 inflammasomes by directly targeting the NACHT domain of NLRP3. Alantolactone shows great potential in the treatment of NLRP3‐driven diseases and could lead to the development of novel NLRP3 inhibitors.


Figure 3 COS directly targets NLRP3 NACHT domain. (A) Structure of biotinylated costunolide (bio-COS). (B) Streptavidin-covered beads with biotin and COS or bio-COS were incubated with the cell lysates of LPS-primed BMDMs for 6 h. As indicated, the levels of bound proteins (Pull-down) and total proteins (Input) were determined using Western blotting. (C) Streptavidin-covered beads with biotin and COS or bio-COS were incubated with the cell lysates of HEK-293T cells transfected with high expression plasmid of Flag-NLRP3-PYD, Flag-NLRP3-NACHT, and Flag-NLRP3-LRR for 6 h. As indicated, the levels of bound proteins (Pull-down) and total proteins (Input) were determined using Western blotting. (D) Binding affinity of COS with rhNLRP3-NACHT was determined using an SPR assay. (E) Binding affinity of COS with rhNLRP3-NACHT was determined using a BLI assay. (F) Western blotting analysis of NLRP3 by SDD-AGE or SDS-PAGE assay in LPS-primed BMDMs treated with COS for 0.5 h and stimulated with ATP for 0.5 h. (G) ATPase activity assay for endogenous NLRP3 proteins in the presence of different concentrations of COS. Data are presented as the mean AE SEM, n Z 3; ***P < 0.001.
Costunolide covalently targets NACHT domain of NLRP3 to inhibit inflammasome activation and alleviate NLRP3-driven inflammatory diseases

September 2022

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87 Reads

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49 Citations

Acta Pharmaceutica Sinica B

The NLRP3 inflammasome’s core and most specific protein, NLRP3, has a variety of functions in inflammation-driven diseases. Costunolide (COS) is the major active ingredient of the traditional Chinese medicinal herb Saussurea lappa and has anti-inflammatory activity, but the principal mechanism and molecular target of COS remain unclear. Here, we show that COS covalently binds to cysteine 598 in NACHT domain of NLRP3, altering the ATPase activity and assembly of NLRP3 inflammasome. We declare COS’s great anti-inflammasome efficacy in macrophages and disease models of gouty arthritis and ulcerative colitis via inhibiting NLRP3 inflammasome activation. We also reveal that the α-methylene-γ-butyrolactone motif in sesquiterpene lactone is the certain active group in inhibiting NLRP3 activation. Taken together, NLRP3 is identified as a direct target of COS for its anti-inflammasome activity. COS, especially the α-methylene-γ-butyrolactone motif in COS structure, might be used to design and produce novel NLRP3 inhibitors as a lead compound.

Citations (4)


... As the concentration of proteolytic enzymes increased, proteins in the solvent group gradually degraded, while andrographolide inhibited the hydrolysis of the target protein, dynamin-related protein 1 (DRP1), compared to the control group [48]. Moreover, DARTS confirmed the targets of polyphyllin D, a natural product effective against NSCLC [49], ergolide, a sesquiterpene lactone natural product with anti-inflammatory and anticancer activities used to treat inflammatory diseases [50], aconitine, an active compound exhibiting cardiotoxic effects found in Aconitum species [51], crellastatin A, a cytotoxic sulfated bis-steroid isolated from the Vanuatu Island marine sponge Crella sp. [52], cryptotanshinone, isolated from the roots of Salvia miltiorrhiza inhibiting the terminal differentiation of human keratinocytes [53], and grape seed extract in anti-colorectal cancer applications [54] ( Table 6). ...

Reference:

Recent advances in identifying protein targets of bioactive natural products
Ergolide covalently binds NLRP3 and inhibits NLRP3 inflammasome-mediated pyroptosis
  • Citing Article
  • May 2023

International Immunopharmacology

... 51 It has been reported that DCLK1, Regulates NF-κB signaling pathway. 52 The NF-κB signaling pathway plays an important role in various cellular processes such as metastasis, DNA damage, apoptosis, tumorigenesis, and immune response against cancer. 53 There have been numerous investigations into the role of inflammation in cancer progression. ...

Doublecortin-like kinase 1 activates NF-κB to induce inflammatory responses by binding directly to IKKβ
  • Citing Article
  • March 2023

Cell Death and Differentiation

... By targeting the NLRP3/GSDMD/caspase-1 axis, it suppressed macrophage pyroptosis and effectively alleviated IgG-IC-induced ALI (98). Alantolactone inhibits the activation and assembly of nlrP3 inflammasomes, lPS-aTP-induced il-1β secretion and caspase-1 activation in macrophages by binding directly to the nacHT domain of NLRP; it also reduces macrophage pyroptosis (99). α-linolenic acid can alleviate neT-induced aM pyroptosis and ali/ardS by mediating pyrin inflammasome activation (100). ...

Discovery of alantolactone as a naturally occurring NLRP3 inhibitor to alleviate NLRP3‐driven inflammatory diseases in mice

... The compound costunolide (COS) is a well-established natural sesquiterpene lactone [16], known for its diverse pharmacological activities including anti-cancer [17] and anti-inflammatory properties [18]. A study has found that COS reduced the oxidative stress in PC12 cells by decreasing the ROS level and elevating MMP [19]. ...

Costunolide covalently targets NACHT domain of NLRP3 to inhibit inflammasome activation and alleviate NLRP3-driven inflammatory diseases

Acta Pharmaceutica Sinica B