Gwilym P. Lewis’s research while affiliated with Royal Botanic Gardens, Kew and other places

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Publications (232)


Phylogenomics, morphological evolution, and taxonomic revision of Spirotropis, a newly delimited legume genus of ecologically dominant Amazonian tree species
  • Article
  • Full-text available

February 2025

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184 Reads

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1 Citation

Taxon

Bernarda De

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Souza Gregório

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[...]

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Spirotropis (Leguminosae, Papilionoideae) is a Neotropical genus of trees that has long remained circumscribed to just one species, S. longifolia. Evidence from previous molecular phylogenetic analyses of nuclear and plastid loci and morphological features supports expanding its circumscription to encompass species from the polyphyletic Clathrotropis s.l. that are widely distributed in the Amazonian forests. Here, we reassess the evolutionary relationships of Spirotropis and Clathrotropis s.l. based on a new plastome-wide phylogenomic analysis of the genistoid legumes. The evolutionary histories of selected morphological characters were estimated through Bayesian stochastic mapping over a robust phylogeny of the Ormosieae clade in order to investigate synapomorphies that define an expanded concept of Spirotropis. The newly circumscribed genus Spirotropis was recovered as a well-supported monophy-letic group comprising five species: the type S. longifolia, three species added from Clathrotropis s.str. (S. nitida, S. paradoxa, S. rosea) and the newly described S. fusca endemic to Venezuela. These species are represented by trees with fragrant flowers and spirally twisted keel petals that grow from tropical lowland rain forests, including seasonally flooded forests, to montane forests. In this study, we present identification keys for the Ormosieae genera and the Spirotropis species, in addition to full taxonomic descriptions , illustrations, maps of geographic distribution, and comments on the morphological distinctiveness, nomenclature, and ecology of each species.

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Knowledge gaps in legume diversity and distribution and prospects for future research

December 2024

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336 Reads

Brazilian Journal of Botany

Despite significant advancements in legume (Leguminosae or Fabaceae) taxonomy, biogeography and phylogenetics, substantial knowledge gaps persist, limiting our ability to understand their diversity, evolutionary history and conservation needs. In this study we used a robust taxonomic backbone and information housed in publicly available biodiversity repositories to quantify global knowledge gaps within the legume family, focusing on the completeness of species inventory (Linnean shortfall), geographic coverage (Wallacean shortfall), and evolutionary representation (Darwinian shortfall). Our findings underscore that approximately 11% of legume species are yet to be described, with high concentrations in regions such as Iran, Northwestern China, Western Australia, Cape Provinces, and Northeast Brazil. The assessment of gaps in geographic coverage revealed that around 19.8% of legume species lack any occurrence record in public databases. Additionally, nearly 50% of species had fewer than ten occurrence records, and another 50% had incomplete geographic coverage relative to their known distributions. Significant geographic gaps were identified in Temperate Asia, particularly Iran, Afghanistan, and Turkey. Furthermore, the limited availability of comprehensive DNA sequence data for key markers (ITS, matK , psbA , rbcL , trnL ), with 52.5% of species lacking sequences for these markers, poses challenges for accurate phylogenetic inference, especially for clades from poorly sampled regions like South America and Temperate Asia. Addressing these gaps requires integrative approaches that combine herbarium collection assessments, targeted fieldwork, enhanced data integration across repositories, and advanced phylogenetic techniques. By prioritising these strategies, we can accelerate the pace of species discovery and refine biogeographical and phylogenetic understanding for this ecologically and economically important group of plants.



Fig. 1 Species richness and endemism of Brazilian Leguminosae across subfamilies (a) and the ten most speciose genera (b)
Fig. 2 Taxonomic diversity (number of species) and endemism of Leguminosae across the major Brazilian phytogeographic domains; the lower parts of the bars below the lines represent the proportion of species endemic to each domain (a). Images of the phytogeographic domains highlight the remarkable landscape and biomes where Brazilian legumes have greatly diversified: Amazônia (b), Caatinga (c), Cerrado (d), Mata Atlântica (e), Pampa (f), and Pantanal (g). Photos by Ricardo Azoury (b), Domingos Cardoso (c-e), João Iganci (f), and Paulo Robson Souza (g)
Fig. 3 Representatives of native genera of Brazilian Leguminosae in the Amazônia phytogeographic domain: Aldina latifolia (a), Monopteryx uaucu (b), Androcalymma glabrifolium (c), Heterostemon mimosoides (d), Petaladenium urceoliferum (e), and Uleanthus erythrinoides (f). Photos by Domingos Cardoso (a, b, d-f) and Marcus Falcão (c)
Fig. 7 Representatives of native genera of Brazilian Leguminosae in the Pampa phytogeographic domain: Adesmia riograndensis (a), Arachis burkartii (b), Pomaria rubicunda (c), Indigofera asperifolia (d), Mimosa sobralii (e), Lupinus bracteolaris (f), Sellocharis paradoxa (g), and Senna nana (h). Photos by João Iganci (b, c, h), Luciano P. de Queiroz (d), Sérgio Bordignon (a, e, f), and R. Lüdtke (g)
Fig. 10 Kernel density map showing the spatial distribution of the conservation status of Brazilian legume species which were assessed as threatened (233 species) or Data Deficient (125) applying the categories and criteria of the IUCN Red List of Threatened species (CR, critically endangered; EN, endangered; VU, vulnerable; and DD, data deficient)
Assembling the Brazilian flora: overview of Leguminosae diversity The Brazil Flora Group -Leguminosae (Recommended citation: BFG -Leguminosae)

November 2024

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698 Reads

Over the last two centuries, since the treatment of Leguminosae in Flora Brasiliensis, many new legume species and genera have been described, adding to the accumulated body of knowledge on species’ circumscriptions and distribution, published in monographs, taxonomic revisions and regional floristic treatments of specific Brazilian phytogeographic domains. The Flora do Brasil 2020 project was a collaborative effort conducted between 2008 and 2020 to meet the targets set by the Global Strategy for Plant Conservation, an initiative of the Convention on Biological Diversity. The project aimed to inventory and revise the taxonomy of all plant species in Brazil, including Leguminosae. The monograph of the legume family was carried out by a team of 102 taxonomists (10% of the project’s total), who worked towards updating and verifying the taxonomy of these plants in an online platform. Information on the life forms, substrate, endemism level, and geographical distribution for all accepted taxa were provided, alongside morphological descriptions, identification keys, images of herbarium specimens and field photographs. In this work, we have extracted from the Flora do Brasil 2020 project the legume data consolidated on December 31st, 2020 to provide an overview of the species diversity of Leguminosae in Brazil and its distribution across phytogeographic domains. The results revealed that the family is represented by 220 genera, of which 19 are endemic, and a total of 2901 species (1576 endemic). After fully monographing 210 genera (95%), we showcased Leguminosae as the most diverse family in the country, representing 6% of the total vascular plant species documented in the Flora do Brasil 2020. The species are found in all phytogeographic domains, exhibiting a wide range of life forms. The Mata Atlântica and Caatinga domains together contain the largest number of endemic legume genera in Brazil, most of them monospe- cific. A discussion on the conservation status of the Brazilian legume species is also provided. Knowledge of the Brazilian flora is continuously advancing, particularly with regards to Leguminosae, demanding regular taxonomic and nomenclatural updates. Current collaborations have greatly improved our understanding of legume diversity and distribution, providing evidence to inform conservation prioritization and action for the Leguminosae in Brazil’s megadiverse flora.


Assembling the Brazilian flora: overview of Leguminosae diversity: The Brazil Flora Group – Leguminosae (Recommended citation: BFG - Leguminosae)

November 2024

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171 Reads

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1 Citation

Brazilian Journal of Botany

Over the last two centuries, since the treatment of Leguminosae in Flora Brasiliensis, many new legume species and genera have been described, adding to the accumulated body of knowledge on species’ circumscriptions and distribution, published in monographs, taxonomic revisions and regional floristic treatments of specific Brazilian phytogeographic domains. The Flora do Brasil 2020 project was a collaborative effort conducted between 2008 and 2020 to meet the targets set by the Global Strategy for Plant Conservation, an initiative of the Convention on Biological Diversity. The project aimed to inventory and revise the taxonomy of all plant species in Brazil, including Leguminosae. The monograph of the legume family was carried out by a team of 102 taxonomists (10% of the project’s total), who worked towards updating and verifying the taxonomy of these plants in an online platform. Information on the life forms, substrate, endemism level, and geographical distribution for all accepted taxa were provided, alongside morphological descriptions, identification keys, images of herbarium specimens and field photographs. In this work, we have extracted from the Flora do Brasil 2020 project the legume data consolidated on December 31st, 2020 to provide an overview of the species diversity of Leguminosae in Brazil and its distribution across phytogeographic domains. The results revealed that the family is represented by 220 genera, of which 19 are endemic, and a total of 2901 species (1576 endemic). After fully monographing 210 genera (95%), we showcased Leguminosae as the most diverse family in the country, representing 6% of the total vascular plant species documented in the Flora do Brasil 2020. The species are found in all phytogeographic domains, exhibiting a wide range of life forms. The Mata Atlântica and Caatinga domains together contain the largest number of endemic legume genera in Brazil, most of them monospecific. A discussion on the conservation status of the Brazilian legume species is also provided. Knowledge of the Brazilian flora is continuously advancing, particularly with regards to Leguminosae, demanding regular taxonomic and nomenclatural updates. Current collaborations have greatly improved our understanding of legume diversity and distribution, providing evidence to inform conservation prioritization and action for the Leguminosae in Brazil’s megadiverse flora.


The phylogenetic relevance of pollen grain size in legumes: a study case with Adesmia DC. and relatives (Leguminosae – Papilionoideae – Dalbergieae – Adesmia Informal Clade)

October 2024

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36 Reads

Grana

Adesmia is the most species-rich genus in the informal Adesmia clade and temperate South America Leguminosae. The pollen morphology, ultrasculpture, and ultrastructure of 25 species of Adesmia were studied using light, scanning, and electron transmission microscopy to explore micromorphological data informative to the taxonomy of the genus. Additionally, a principal component analysis was performed to elucidate patterns of quantitative data variation among species concerning the most recent molecular data. We provide novel data about the genus, a comprehensive description of the pollen grains and sexine ultrasculpture, and descriptions of the exine ultrastructure. Furthermore, we suggest delimiting two pollen types based on the size of equatorial and polar axis dimensions to help in future palynotaxonomic studies and character optimisation focusing on pollen traits.


A Taxonomic Account of Mucuna (Leguminosae–Papilionoideae) in Africa, Madagascar, and the Indian Ocean Islands, with Comments on Its Biogeographic History

October 2024

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119 Reads

Annals of the Missouri Botanical Garden

A taxonomic account of the papilionoid legume genus Mucuna Adans. in Africa, Madagascar, and the Indian Ocean islands is presented. Fifteen large herbaria that host representative collections of African specimens were visited and online databases consulted. A new phylogenetic analysis is also presented. Nineteen taxa are described and mapped. Twelve species and six infraspecific taxa (including autonyms, thus 15 terminal taxa) of Mucuna are present on the African mainland, where three species are representatives of Mucuna subg. Mucuna and the other nine are members of Mucuna subg. Stizolobium (P. Browne) Baker. In the Madagascar and Indian Ocean islands biodiversity hotspot, Mucuna is represented by six species, two of which (M. gigantea (Willd.) DC. and M. pruriens (L.) DC.) also occur on the African mainland. The other four species are endemic to Madagascar or adjacent islands and are representatives of Mucuna subg. Mucuna. The only representative of Mucuna subg. Stizolobium in Madagascar is M. pruriens. Our study suggests that the African mainland is the center of origin of Mucuna subg. Stizolobium. It is also revealed as the world’s most species-rich region in representatives of this subgenus, whereas on the other continents, subgenus Mucuna is the most diverse.


Beyond 4 × 4: Paramotoring a novel approach to accelerate plant exploration in challenging environments

September 2024

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180 Reads

Societal Impact Statement Addressing the burning environmental crisis, we explore how the ‘extreme sport’ of paramotoring can enhance and accelerate scientific exploration with minimal environmental impact compared to off‐road vehicles. Our study demonstrates the scientific potential of paramotoring to access fragile desert ecosystems and investigate unrecorded habitats and species. Comparisons with 4 × 4s showed significant reductions in CO2‐eq emissions for longer missions and ninefold faster travel times. Unlike off‐road vehicles, which can damage the equivalent of over one football pitch in area per linear kilometre driven, paramotors cause minimal damage. Integrating extreme sports and science can accelerate data and specimen collection for more effective habitat conservation. This has the potential to spark discoveries and engagement across diverse communities. Summary In the face of an urgent climate and environmental crisis, we explore the potential of paramotoring to expand scientific reach and collection capability without the environmental harm associated with off‐road vehicles. In Peru's fog oasis desert, we brought together paramotor experts and scientists to conduct missions involving monitoring, plant sampling, surveying, sensor placement and transportation. We compared the environmental impact and time taken by paramotoring with surveys conducted using off‐road vehicles and walking. Shorter paramotor missions showed small differences in CO2 equivalents and time efficiency compared to off‐road vehicles. However, longer missions (28 km from base camp) revealed up to nine times faster travel and two thirds less CO2 equivalent emissions. Notably, off‐road vehicles left a substantial environmental footprint (700 to 8000 m² per km), whilst paramotors had a minimal impact, with a tiny surface ‘footprint’ of just a few square metres, representing orders of magnitude (1000 to 10,000) less environmental impact. With basic training in identification and sampling, paramotorists collected plant specimens that are invaluable for ongoing and future scientific study. Whilst logistical and safety challenges in transporting scientists via paramotors need further investigation, the benefits, especially compared to surface travel, are evident. Integrating extreme sports into scientific endeavour promises wider and more comprehensive exploration, new discoveries and increased engagement across diverse communities—and in summary—offers significant potential to address urgent environmental challenges.


Repeatome evolution across space and time: Unravelling repeats dynamics in the plant genus Erythrostemon Klotzsch (Leguminosae Juss)

September 2024

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90 Reads

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1 Citation

Molecular Ecology

Fluctuations in genomic repetitive fractions (repeatome) are known to impact several facets of evolution, such as ecological adaptation and speciation processes. Therefore, investigating the divergence of repetitive elements can provide insights into an important evolutionary force. However, it is not clear how the different repetitive element clades are impacted by the different factors such as ecological changes and/or phylogeny. To discuss this, we used the Neotropical legume genus Erythrostemon (Caesalpinioideae) as a model, given its ancient origin (~33 Mya), lineage‐specific niche conservatism, macroecological heterogeneity, and disjunct distribution in Meso‐ and South American (MA and SA respectively) lineages. We performed a comparative repeatomic analysis of 18 Erythrostemon species to test the impact of environmental variables over repeats diversification. Overall, repeatome composition was diverse, with high abundances of satDNAs and Ty3/gypsy‐Tekay transposable elements, predominantly in the MA and SA lineages respectively. However, unexpected repeatome profiles unrelated to the phylogeny/biogeography were found in a few MA ( E. coccineus , E. pannosus and E. placidus ) and SA ( E. calycinus ) species, related to reticulate evolution and incongruence between nuclear and plastid topology, suggesting ancient hybridizations. The plesiomorphic Tekay and satDNA pattern was altered in the MA‐sensu stricto subclade with a striking genomic differentiation (expansion of satDNA and retraction of Tekay) associated with the colonization of a new environment in Central America around 20 Mya. Our data reveal that the current species‐specific Tekay pool was the result of two bursts of amplification probably in the Miocene, with distinct patterns for the MA and SA repeatomes. This suggests a strong role of the Tekay elements as modulators of the genome–environment interaction in Erythrostemon , providing macroevolutionary insights about mechanisms of repeatome differentiation and plant diversification across space and time.



Citations (55)


... & Hook.f. e Spirotropis Tul. (Cardoso et al. 2015(Cardoso et al. , 2017Gregório et al. 2025). Panurea e Spirotropis são exclusivamente amazônicos (Lewis et al. 2005), enquanto Ormosia possui padrão de distribuição disjunto anfipacífico tropical (Rudd 1965;Torke et al. 2022). ...

Reference:

Flora da Bahia: Leguminosae – Ormosia (Papilionoideae: Ormosieae)
Phylogenomics, morphological evolution, and taxonomic revision of Spirotropis, a newly delimited legume genus of ecologically dominant Amazonian tree species

Taxon

... The index ranges from 0 to 1, in which, 0 indicates maximum inequality (i.e., one or a few species are completely dominating) and 1 indicates maximum equitability (i.e., all species have equal abundances). Each unique repeat lineage was treated as a "species" and its copy-number as "individuals" within the "community" (genome) enabling integration into Pielou´s equation (Castro et al. 2024). The abundance of all lineages identified by RepeatExplorer was taken into consideration, providing us with a diversity measure for each genome. ...

Repeatome evolution across space and time: Unravelling repeats dynamics in the plant genus Erythrostemon Klotzsch (Leguminosae Juss)

Molecular Ecology

... , or even the iconic Brazilian "pau-ferro" libidibia ferrea (Mart. ex Tul.) L.P. Queiroz complex, which is now recognized as four species (Oliveira et al. 2024). Moreover, the description of new species distributed throughout the Caatinga highlights the importance of preserving and conserving Caatinga vegetation, considering its vast diversity across several plant groups, especially the legume family, as previously recorded . ...

Reassessing the taxonomy of the Libidibia ferrea complex, the iconic Brazilian tree “pau-ferro” using morphometrics and ecological niche modeling
  • Citing Article
  • May 2024

Brazilian Journal of Botany

... The incongruences are likely due to the fact that the APG IV analysis was conducted using a very limited number of phylogenetic markers [ 67 ]. In contrast, recent phylogenomics / phylotranscriptomic studies are consistent with most of our findings [68][69][70][71][72][73][74][75]. For example, the phylogenetic positions of the Fagales, Rosales, Celastrales-Oxalidales-Malpighiales, Myrtales, Cornales, and Ericales in our study (Fig. 5 C) are consistent with the genome-scale phylogenomics based on coalescent-based analysis of 482 single-copy nuclear orthologous sequences [ 72 ]. ...

Phylogenomics and the rise of the angiosperms

Nature

... The genus Cassia L. (Family: Fabaceae/Leguminosae, subfamily: Caesalpinioideae) is considered as one of the largest genera of angiosperms, it is found naturally in tropical and subtropical regions worldwide [1,2,3]. Its numerous economic applications, particularly in herbal medicine, account for its significance. ...

Advances in Legume Systematics 14. Classification of Caesalpinioideae. Part 2: Higher-level classification

... acanthadesmia Burkart) and 43 series primarily based on macromorphological traits (e.g. presence/absence of spines) that still need to have their monophyly tested in molecular phylogenetic studies (Burkart 1967;Iganci et al. 2013;Monteiro et al. 2024). ...

Towards a Monophyletic Infrageneric Circumscription of Adesmia DC. (Dalbergieae, Leguminosae): a Taxonomic Revision in Adesmia series Adesmia
  • Citing Article
  • March 2024

Phytotaxa

... Wen et al. (2009) mention that this is an uncommon event when compared to the North to South colonization. However, this finding underscores the importance of the Andes as a corridor linking the floras of North and South Americas, as observed in different dry forests legume lineages such as Strombocarpa (Hughes et al. 2022), Desmanthus (Luckow 1993), the Robiniod clade (Lavin et al. 2003;Queiroz and Lavin 2011), Hoffmannseggia (Simpson et al. 2005) and Harpalyce (São-Mateus, et al. 2024). ...

Molecular phylogeny and divergence time of Harpalyce (Leguminosae, Papilionoideae), a lineage with amphitropical diversification in seasonally dry forests and savannas
  • Citing Article
  • February 2024

Molecular Phylogenetics and Evolution

... However, other ecologically important groups still lack more detailed studies such as the papilionoid genus Spirotropis Tul., whose systematics, apart from the detailed description of S. candollei Tul. by Walpers (1846), had long been neglected (Cardoso & al., 2012a(Cardoso & al., , 2013a(Cardoso & al., , 2015b, particularly in the context of its relationship to the genus Clathrotropis (Benth.) Harms, which has recently been demonstrated to be polyphyletic (Gregório & al., 2024). ...

A molecular phylogeny of the early-branching Genistoid lineages of papilionoid legumes reveals a new Amazonian genus segregated from Clathrotropis
  • Citing Article
  • November 2023

Botanical Journal of the Linnean Society

... Hypothesis 1: Mapping individual microbiota x   to soil microbiota within y R  a range. In order to adapt to the universality, the microflora is assumed to remain unchanged and is not constrained by other conditions, such as temperature, humidity, etc. [9], and the microbiota data are used to ...

Island area, isolation and climate effects upon flower traits in a megadiverse archipelago
  • Citing Article
  • October 2023

Journal of Biogeography

... Although most pau-brasil plantations have been established to contribute to the species' conservation, a lack of genetic diversity has been reported in these plantings (Rees et al. 2023). Existing pau-brasil plantations designed for sustainable timber production remain scarce but may become the primary, if not the sole, future source for markets, provided legal registration schemes are met and trees are grown to large enough sizes. ...

Phylogenomic and morphological data reveal hidden patterns of diversity in the national tree of Brazil, Paubrasilia echinata

American Journal of Botany