Guy Cowlishaw’s research while affiliated with Zoological Society of London and other places

What is this page?


This page lists works of an author who doesn't have a ResearchGate profile or hasn't added the works to their profile yet. It is automatically generated from public (personal) data to further our legitimate goal of comprehensive and accurate scientific recordkeeping. If you are this author and want this page removed, please let us know.

Publications (199)


Annual Review of Environment and Resources Wild Meat Is Still on the Menu: Progress in Wild Meat Research, Policy, and Practice from 2002 to 2020
  • Article
  • Full-text available

February 2024

·

319 Reads

·

2 Citations

·

·

·

[...]

·

Katharine Abernethy

Several hundred species are hunted for wild meat in the tropics, supporting the diets, customs, and livelihoods of millions of people. However, unsustainable hunting is one of the most urgent threats to wildlife and ecosystems worldwide and has serious ramifications for people whose subsistence and income are tied to wild meat. Over the past 18 years, although research efforts have increased, scientific knowledge has largely not translated into action. One major barrier to progress has been insufficient monitoring and evaluation, meaning that the effectiveness of interventions cannot be ascertained. Emerging issues include the difficulty of designing regulatory frameworks that disentangle the different purposes of hunting, the large scale of urban consumption, and the implications of wild meat consumption for human health. To address these intractable challenges, we 222 Ingram et al. Annu. Rev. Environ. Resour. 2021.46:221-254. Downloaded from www.annualreviews.org Access provided by 67.86.227.218 on 02/09/24. See copyright for approved use. propose eight new recommendations for research and action for sustainable wild meat use, which would support the achievement of the United Nations Sustainable Development Goals.

Download

Forest plot of standardized estimates of the models with swelling duration (red) and maximal-swelling duration (MSD) (the null model is shown; blue) as response variables. The level of significance is indicated by an unfilled circle (p > 0.05) or a filled circle (p < 0.001). Only group size significantly predicted a decreased MSD in the null model.
The effect of group size on maximal-swelling duration. The line indicates the predicted effect by varying the respective focal variable and by setting all the other covariates to their mean. The shaded area represents the 95% CI.
Cycle length flexibility: is the duration of sexual receptivity associated with changes in social pressures?

November 2023

·

56 Reads

Research in social mammals has revealed the complexity of strategies females use in response to female-female reproductive competition and sexual conflict. One point at which competition and conflict manifests acutely is during sexual receptivity, indicated by swellings in some primates. Whether females can adjust their sexual receptivity from cycle to cycle to decrease reproductive competition and sexual conflict in response to social pressures has not been tested. As a first step, this study explores whether sexual receptivity duration is predicted by social pressures in wild female chacma baboons (Papio ursinus). Given that female baboons face intense reproductive competition and sexual coercion, we predicted that: females could shorten the duration of their sexual receptive period to reduce female–female aggression and male coercion or increase it to access multiple or their preferred male(s). We quantified 157 ovulatory cycles from 46 wild females living in central Namibia recorded over 15 years. We found no support for our hypothesis; however, our analyses revealed a negative correlation between maximal-swelling duration and group size, a proxy of within-group competition. This study provides further evidence that swelling is costly as well as a testable framework for future investigations of ‘cycle length manipulation’.


(A) Distribution of tandem repeat motif sizes. Shaded columns refer to unused sites that either fell in the Pseudo Autosomal Region (shaded in gray in panel (B)) or exceeded the maximum length (100 bp; panel (B)) (B) Chromosomal location and maximum length of identified loci. Colours as in panel (A). (C) Proportion of successful genotypes against whole genome sequencing coverage of each sample, coloured by species and shaped by sex.
(A) Heatmap coloured by the length of each allele in the Papio screening dataset. Samples are clustered according to the phylogeny as described in "Materials and Methods". Sites (columns) are annotated with boxplots of (i) genotype quality, (ii) proportion of reads with a putative stutter artifact, (iii) proportion of reads with an indel in the flanking region, (iv) bar plot number of missing data and finally (v) coloured bar of motif sizes as coulor-coded in legend. Each sample (row) is annotated with a coloured bar of (i) species and (ii) project. (B) Summary of the heatmap in panel A with the distribution of allele length. Samples are divided by alleles and species, each dot size is scaled by the relative proportion in each species (e.g. if two out of three P. papio samples share the same allele the dot will be 2/3 of the maximum size). Sites are identified using the nomenclature proposed in "Materials and Methods". DYS495 and DYS565 are markers homologous to human Y-STRs and the human label has been therefore indicated here. The heatmap was produced with ComplexHeatmap v.2.8.0 R package⁵⁶.
(A) Pairwise normalized distance (number of equal alleles divided by total number of shared alleles) between pedigreed samples from Low coverage dataset. Samples are grouped by pedigree (Fig. S4) and groups are clustered according to the heatmap values. The size of each panel is proportional to the number of shared alleles (i.e. the denominator of the pairwise normalized distance). The coloured bars represent a numerical id for each family, the imputed species (as described in main text), the P. anubis ancestry and the hybrid status (both as reported in ²⁹). (B) Pairwise normalized distance between high coverage P. anubis and P. cynocephalus samples (columns) and low coverage samples (rows). Both rows and columns are clustered by k-means. The barplot represents the number of genotypes for each low coverage sample. Coloured cells give the information to: the species, the family (as coloured as in panel A), the imputed species and the P. anubis ancestry and hybrid status (as reported in Ref.²⁹). Both heatmaps were produced with ComplexHeatmap R package⁵⁶.
(A) Phylogenetic relationships among Theropithecus gelada Y chromosome haplotypes generated using Papio-discovered STRs. Colours refer to demes of origin (see legend). (B) Phylogenetic relationships among Y chromosome haplotypes generated from a selection of Papio and Theropithecus individuals (Macaca dataset) using Macaca-discovered STRs. Colours refers to the demes/species of origin as described in the legend. (C) Phylogenetic relationships among Y chromosome haplotypes of individuals in the Macaca dataset generated by resampling Papio-discovered STRs, as described in the main text. Colours refers to the populations/species of origin as described in the legend. The proportion of times where the node is observed when resampling STR markers is reported in red. (D) Difference in allele calling over loci shared across Papio-based and Macaca-based STRs. Colours in the Species column refer to legend in B/C. The heatmap was produced with ComplexHeatmap v.2.8.0 R package⁵⁶.
Assessing the recovery of Y chromosome microsatellites with population genomic data using Papio and Theropithecus genomes

August 2023

·

118 Reads

·

2 Citations

Y chromosome markers can shed light on male-specific population dynamics but for many species no such markers have been discovered and are available yet, despite the potential for recovering Y-linked loci from available genome sequences. Here, we investigated how effective available bioinformatic tools are in recovering informative Y chromosome microsatellites from whole genome sequence data. In order to do so, we initially explored a large dataset of whole genome sequences comprising individuals at various coverages belonging to different species of baboons (genus: Papio ) using Y chromosome references belonging to the same genus and more distantly related species ( Macaca mulatta ). We then further tested this approach by recovering Y-STRs from available Theropithecus gelada genomes using Papio and Macaca Y chromosome as reference sequences. Identified loci were validated in silico by a) comparing within-species relationships of Y chromosome lineages and b) genotyping male individuals in available pedigrees. Each STR was selected not to extend in its variable region beyond 100 base pairs, so that loci can be developed for PCR-based genotyping of non-invasive DNA samples. In addition to assembling a first set of Papio and Theropithecus Y-specific microsatellite markers, we released TYpeSTeR, an easy-to-use script to identify and genotype Y chromosome STRs using population genomic data which can be modulated according to available male reference genomes and genomic data, making it widely applicable across taxa.


Social network inheritance and differentiation in wild baboons

May 2023

·

94 Reads

·

6 Citations

Immatures' social development may be fundamental to understand important biological processes, such as social information transmission through groups, that can vary with age and sex. Our aim was to determine how social networks change with age and differ between sexes in wild immature baboons, group-living primates that readily learn socially. Our results show that immature baboons inherited their mothers' networks and differentiated from them as they aged, increasing their association with partners of similar age and the same sex. Males were less bonded to their matriline and became more peripheral with age compared to females. Our results may pave the way to further studies testing a new hypothetical framework: in female-philopatric societies, social information transmission may be constrained at the matrilineal level by age- and sex-driven social clustering.



Stable isotopes reveal the effects of maternal rank and infant age on weaning dynamics in wild chacma baboons

November 2022

·

33 Reads

·

4 Citations

Animal Behaviour

Maternal strategies reflect the trade-off between offspring needs and maternal ability to invest, a concept described by the evolutionary theory of parent–offspring conflict. In mammals this conflict has often been investigated by studying weaning, the transition from maternal milk consumption to dietary independence. An investigation of individual variation in weaning can provide information on the adaptive significance of maternal strategies in relation to social and biological variables. We analysed stable nitrogen isotopes of hair samples collected from 22 mother–infant dyads in a wild population of chacma baboons, Papio ursinus, in conjunction with behavioural data on suckling, to explore the temporal dynamics of weaning, as well as the extent and determinants of individual variation in these dynamics. The weaning pattern suggested by isotope values and behavioural data were congruent. The difference between infant and mother stable nitrogen isotope values decreased faster with age in infants of low-ranking mothers, which suggests a faster progression towards weaning, perhaps due to subordinate females experiencing lower resource availability and so being less able to bear the costs of lactation over prolonged periods. Additionally, within-infant variation in stable nitrogen isotope values showed an increase with age (which was not detectable between infants), potentially highlighting the nutritional costs that weaning imposes on offspring. Our combination of isotope analysis and behavioural data from a wild population provides insight into the evolution of maternal strategies. In particular, it suggests that the quantity of care a mother can provide is affected by her rank, with subordinate females possibly not able to lactate for as long and perhaps benefiting from weaning earlier.


Female chacma baboons modulate their sexual receptivity in response to male coercion

September 2022

·

37 Reads

Research in social mammals has revealed the complexity of female counter-strategies to reproductive competition and sexual conflict. For example, comparative research has shown that the length of female sexual receptivity varies with infanticide risk, but whether individuals can strategically adjust their period of receptivity from cycle to cycle remains unknown. This study addresses this gap by exploring whether wild female chacma baboons (Papio ursinus) modulate their receptivity in response to the social environment. Given that female chacma baboons (a) compete for paternal care and (b) that infanticide risk and coercion are high, we predicted that: females could (a) shorten their receptive period to reduce intrasexual aggression and (b) male coercion, or (c) increase their conceptive period to access multiple or their preferred male. We quantified 158 receptivity cycles from 47 females recorded over 15 years. Female swelling duration, but not maximal-swelling, had low repeatability between females, but most variation in both phases stemmed from within females. We found evidence that females decrease their oestrous duration in response to an increasing number of in-group males, possibly to decrease their exposure to sexual coercion. We thus present preliminary evidence for an unexplored mechanism under sexual selection: female cycle length manipulation.


Evolutionary Determinants of Nonseasonal Breeding in Wild Chacma Baboons

August 2022

·

42 Reads

·

4 Citations

The American Naturalist

Animal reproductive phenology varies from strongly seasonal to nonseasonal, sometimes among closely related or sympatric species. While the extent of reproductive seasonality is often attributed to environmental seasonality, this fails to explain many cases of nonseasonal breeding in seasonal environments. We investigated the evolutionary determinants of nonseasonal breeding in a wild primate, the chacma baboon (Papio ursinus), living in a seasonal environment with high climatic unpredictability. We tested three hypotheses proposing that nonseasonal breeding has evolved in response to (1) climatic unpredictability, (2) reproductive competition between females favoring birth asynchrony, and (3) individual, rank-dependent variations in optimal reproductive timing. We found strong support for an effect of reproductive asynchrony modulated by rank: (i) birth synchrony is costly to subordinate females, lengthening their interbirth intervals; (ii) females alter their reproductive timings (fertility periods and conceptions) in relation to previous conceptions in the group; and (iii) the reported effect of birth synchrony on interbirth intervals weakens the intensity of reproductive seasonality at the population level. This study emphasizes the importance of sociality in mediating the evolution of reproductive phenology in group-living organisms, a result of broad significance for understanding key demographic parameters driving population responses to increasing climatic fluctuations.


Immigrant males' knowledge influences baboon troop movements to reduce home range overlap and mating competition

January 2022

·

69 Reads

·

1 Citation

Behavioral Ecology

Mechanistic models suggest that individuals’ memories could shape home range patterns and dynamics, and how neighbors share space. In social species, such dynamics of home range overlap may be affected by the pre-dispersal memories of immigrants. We tested this “immigrant knowledge hypothesis” in a wild population of chacma baboons (Papio ursinus). We predicted that overlap dynamics with a given neighboring troop’s home range should reflect males’ adaptive interests in overlap when the alpha male had immigrated from this neighboring troop but less so when the alpha male originated from elsewhere. We used data collected between 2005 and 2013 on two neighboring troops in Namibia, comprising GPS records of daily ranges, male natal origins, daily females’ reproductive status, and a satellite index of vegetation growth. We found support for our prediction in line with male reproductive strategies but not in line with foraging conditions. In periods with a higher relative number of fertile females over adult males in the focal troop, male baboons would benefit from reducing overlap with their neighbors to mitigate the costs of between-troop mating competition. This was indeed observed but only when the alpha male of the focal troop was an immigrant from that neighboring troop, and not with alpha males of other origins, presumably due to their different knowledge of the neighboring troop. Our findings highlight the role of reproductive competition in the range dynamics of social groups, and suggest that spatial segregation between groups could increase through the combination of dispersal and memory.


Evolutionary determinants of non-seasonal breeding in wild chacma baboons

January 2022

·

9 Reads

Animal reproductive phenology varies from strongly seasonal to non-seasonal, sometimes among closely related or sympatric species. While the extent of reproductive seasonality is often attributed to environmental seasonality, this fails to explain many cases of non-seasonal breeding in seasonal environments. We investigated the evolutionary determinants of non-seasonal breeding in a wild primate, the chacma baboon (Papio ursinus), living in a seasonal environment with high climatic unpredictability. We tested three hypotheses proposing that non-seasonal breeding has evolved in response to (1) climatic unpredictability, (2) reproductive competition between females favoring birth asynchrony, and (3) individual, rank-dependent variations in optimal reproductive timing. We found strong support for an effect of reproductive asynchrony modulated by rank: (i) birth synchrony is costly to subordinate females, lengthening their interbirth intervals, (ii) females alter their reproductive timings (fertility periods and conceptions) in relation to previous conceptions in the group, and (iii) the reported effect of birth synchrony on interbirth intervals weakens the intensity of reproductive seasonality at the population level. This study emphasizes the importance of sociality in mediating the evolution of reproductive phenology in group-living organisms, a result of broad significance for understanding key demographic parameters driving population responses to increasing climatic fluctuations.


Citations (64)


... A carne de animais caçados é um recurso amplamente explorado por populações rurais em diversas partes do mundo, frequentemente servindo como a única fonte de proteína disponível em suas dietas (Nielsen et al., 2018). Nas últimas décadas, o crescimento populacional em áreas próximas a regiões conservadas aumentou a demanda por esse recurso (Ingram et al., 2021), muitas vezes alcançando níveis insustentáveis. Evidências recentes demonstram que áreas sujeitas à caça apresentam uma redução de 58% nas populações de aves e 83% nas de mamíferos em comparação com áreas não caçadas (Benítez-López et al., 2017). ...

Reference:

CONTEXTOS SOCIOECONÔMICOS E SUA INFLUÊNCIA NA SELEÇÃO DE ESPÉCIES EM UMA COMUNIDADE TRADICIONAL NA MATA ATLÂNTICA
Annual Review of Environment and Resources Wild Meat Is Still on the Menu: Progress in Wild Meat Research, Policy, and Practice from 2002 to 2020

... We applied TYPeSTer to the genomes of the gelada samples from the Arsi (Southern) region and Leibniz Institute here analysed to genotype the set of Y-STRs previously recovered from other gelada samples (Mutti et al., 2023). The STRs were assembled in haplotypes and merged with the haplotypic data previously generated (Table S3). ...

Assessing the recovery of Y chromosome microsatellites with population genomic data using Papio and Theropithecus genomes

... Finally, (P4) juveniles who recently experienced the birth of a younger sibling, and especially those who experienced it at a young age, would display more tantrums and self-directed behaviours than those who did not. For (P2−P4), we explored potential sex-differences in juveniles' reactions to TTS, as sex-differences in mother-offspring bond and social behaviour typically emerge early during development in cercopithecines [71][72][73]. ...

Social network inheritance and differentiation in wild baboons

... Maternal aggression and rejection increases, often accompanied by signs of stress and 'depression' in the offspring [44][45][46]48], such as tantrums (a behaviour commonly considered as a behavioural manifestation of mother-offspring conflict [43,49]) or self-directed behaviours (generally indicating anxiety [50][51][52]). In wild chacma baboons (Papio ursinus), maternal behaviour does not change following the birth of a new infant but juveniles nonetheless solicit their mother more often and show more signs of distress (especially those that experience this transition at an older age) than juveniles without a sibling [53]. In wild bonobos (Pan paniscus), juveniles face an abrupt fivefold increase in cortisol level after the birth of their sibling, which endures for more than six months, although they show little behavioural changes [54]. ...

Transition to siblinghood in a wild chacma baboon population
  • Citing Article
  • May 2023

Animal Behaviour

... Second, our estimations of lactation peak and weaning might lack accuracy, due to strong between-populations and betweenindividuals variation. Data quantifying maternal energy expenditure during lactation (Rosetta et al., 2011), or isotopic measures of trophic levels between mothers and infants (Reitsema, 2012;Carboni et al., 2022) would be necessary, for each population, to determine the dynamics of lactation and weaning. Finally, additional unexplored factors can potentially affect reproductive timing and further limit our ability to detect a clear pattern. ...

Stable isotopes reveal the effects of maternal rank and infant age on weaning dynamics in wild chacma baboons
  • Citing Article
  • November 2022

Animal Behaviour

... Importantly, the key adaptive trait that evolved in the Papio genus may not be simply the loss of breeding seasonality per se, but the evolution of a flexible reproductive phenology. A same papionin female can give birth at different timings for successive birth events, depending on her own individual traits or physiological constraints, or alternatively depending on the strategies of other females in the same social group, as shown in Papio ursinus (Dezeure et al., 2021;Dezeure et al., 2023). This reproductive flexibility at the individual level necessarily shapes population patterns of reproductive seasonality, leading to lower reproductive seasonality. ...

Evolutionary Determinants of Nonseasonal Breeding in Wild Chacma Baboons
  • Citing Article
  • August 2022

The American Naturalist

... Within non-human animal groups, empirical work suggests that collective decision-making processes and/or social networks can vary extensively with species, populations and/or environmental or social contexts within populations (e.g. see the case of travelling baboon troops [99][100][101]). It is thus possible that the distribution of collective learning capacities in animal groups would best be predicted by social organization rather than cognitive capacities. ...

Immigrant males' knowledge influences baboon troop movements to reduce home range overlap and mating competition
  • Citing Article
  • January 2022

Behavioral Ecology

... Consistent differences among females in their maternal behaviour can emerge through differences in social and environmental conditions they faced during their own early developmental period or can be intrinsic [15,16]. In humans, consistent behavioural differences among individuals are often termed personality, and this term is applied more and more to nonhuman species as well [17][18][19][20]. Although maternal behaviours are rarely included in the traits used to assign personality, they are interesting candidates to investigate consistent behavioural differences. ...

Potential applications of personality assessments to the management of non-human primates: a review of 10 years of study

... For example, demand for wildlife and other food products is predicted to increase overall in urban areas (Guneralp et al., 2018) even though per capita consumption may decrease (Chaves, Valle, Tavares, Morcatty, & Wilcove, 2021). Urban demand for wildlife is already a major global conservation and societal concern because increasing pressure on wildlife can lead to collapses of target species and a consequent increase in food insecurity among rural residents who depend on wildlife for food and income (Ingram et al., 2021). ...

Wild Meat Is Still on the Menu: Progress in Wild Meat Research, Policy, and Practice from 2002 to 2020

Annual Review of Environment and Resources

... Both species reproduce rapidly and are adaptable, making them resilient to hunting pressure. Duikers' elusiveness and the use of snares, a low-cost hunting method, further contribute to their market prevalence [79,80]. ...

Wild Meat Is Still on the Menu: Progress in Wild Meat Research, Policy, and Practice from 2002 to 2020
  • Citing Article
  • August 2021

Annual Review of Environment and Resources