Genaro M. Soto-Zarazúa’s research while affiliated with Autonomous University of Queretaro and other places

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Publications (69)


Figure 1. The biogeographic and physiographic context of P. cembroides is illustrated as follows: (a) the locations of P. cembroides are mapped based on their distribution across physiographic provinces and biogeographic realms; (b) their distribution is shown relative to altitude above sea level. These visualizations were created using QGIS 3.36.3 software, utilizing metadata from the CONABIO Geoportal and RESOLVE Ecoregions 2017 [46,48].
Figure 3. Cont.
Percentage content of different pine nut species and locations.
Methods to extract and detect fatty acids in P. cembroides and different pine nuts species.
Techniques and Methods for Fatty Acid Analysis in Lipidomics: Exploring Pinus cembroides Kernels as a Sustainable Food Resource
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February 2025

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47 Reads

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Luis Miguel Contreras-Medina

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Enrique Montoya-Morado

The large-scale conversion of forests to agriculture has caused biodiversity loss, climate change, and disrupted dietary fatty acid balances, with adverse public health effects. Wild edibles like pine nuts, especially Pinus cembroides, provide sustainable solutions by supporting ecosystems and offering economic value. However, variability in seed quality limits market potential, and lipidomic studies on P. cembroides remain sparse. This paper underscores the ecological, social, and nutritional value of P. cembroides while advocating for advanced research to enhance its use as a non-timber forest resource in Mexico’s communal areas. It explores various analytical techniques, such as nuclear magnetic resonances (NMR), chromatography coupled with mass spectrometry (HPLC-MS, GC-MS) and GC coupled with flame ionization detector (GC-FID), highlighting extraction methods like derivatization, purification, and thin-layer chromatography. Likewise, some considerations are addressed for the treatment of data obtained in the detection of fatty acids from bioformatics and the evaluation of the data through statistical methods and artificial intelligence and deep learning. These approaches aim to improve fatty acid profiling and seed quality assessments, fostering the species economic viability and supporting sustainable livelihoods in rural communities, encouraging researchers across the country to explore the fatty acid composition of different P. cembroides populations can drive valuable insights into its nutritional and ecological significance. Such efforts can enhance understanding of regional variations, promote sustainable use, and elevate the specie’s economic and scientific value.

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Thermal Computational Fluid Dynamics Simulation of Two Designs of Direct Dehydrators for Agricultural Products

September 2024

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36 Reads

The dehydration process modifies the physical and chemical characteristics of certain crops, thereby increasing their shelf life and consequently reducing the organic waste generated. This process is contingent upon maintaining optimal temperature and humidity levels to prevent deterioration of the product. As indirect dehydrators have a high energy demand, new designs are required that facilitate the uniform distribution of air with a high-volume capacity of 100 kg per day. In the present study, computational fluid dynamics (CFD) techniques were employed to assess the drying performance of two dehydrator models. The simulations were executed in Solidworks 2020 and Flow Simulation, and they examined temperature distribution and velocity within the interior of the dehydrators. In Model 1, an inlet volume flow of 0.08 m³ s⁻¹ and a heat source of 3.5 kW are considered, within a volume of 2.11 m³. In Model 2, an inlet volume flow of 0.03 m³ s⁻¹ and two heat source of 2.5 kW are considered, within a volume of 2.02 m³. Model 1 was unable to achieve uniform air distribution within the drying chamber. In contrast, Model 2 demonstrated uniform velocity and temperature across the majority of the drying chamber, making it a superior option.


Figura 1. Definiciones y dependencias. Extraído y modificado de Baganz et al., (2021). [17]
El impacto positivo de los Sistemas Integrados Agro-acuícolas en el Objetivo para el Desarrollo Sostenible 6- Agua limpia y SaneamientoThe positive impact of Integrated Agri-Aquaculture Systems on the Sustainable Development Goal 6- Clean Water and Sanitation

January 2024

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93 Reads

The current state of the 9 planetary boundaries coupled with the growth rate of the world population has alerted us to reconsider how resources are used to meet food demand through sustainable agro-industrial systems. With only 0.01% of the world's total volume, freshwater plays a fundamental role in the stability and functioning of any biosystem. The inadequate handling of this extremely valuable resource has caused its operating space to be on the threshold of safety and is about to enter the zone of uncertainty. The actions presented by the United Nations in the 2030 Agenda for Sustainable Development are a strategy to reduce and correct some of these interrelated problems. Objective 6 of this document - Clean Water and Sanitation - seeks to guarantee the availability and sustainable management of water and sanitation for all, however, this has not yet been fulfilled. Therefore, it is essential to continue exhausting proposals for possible solutions to these issues. Aquaponics, a sustainable food production system, is based on the upcycling of water, the reuse of nutrients, and the reduction of wastewater in an organic sense. Therefore, the purpose of this article is to analyze the benefits that can be obtained from the use of aquaponic systems to partially accelerate the fulfillment of objectives 6.3, 6.4, 6.5, and 6.a in improving water quality by reducing pollution, eliminating landfills, and minimizing the release of harmful products, halving the proportion of untreated wastewater and substantially increasing recycling and safe reuse.


Traditional Coupled Aquaponic System layout. (a) Recirculating Aquaculture System (RAS) tank; (b) Settler for sludges; (c) Biofilter with aeration; (d) Different hydroponic units; (e) Sump and one pump; * The different hydroponic units depend on the crop species, space, and budget. Modified from [16].
Multi-loop Decoupled Aquaponic System (DAQs). (a) Recirculating Aquaculture System (RAS); (b) Settler for sludges; (c) Biofilter with aeration; (d) Sump and pump; (e) The first stage of the anaerobic reactor with biogas production (mainly); (f) Second stage of the anaerobic reactor with fertilizer recovery for the hydroponic unit; (g) Hydroponic units; (h) Thermal distillation/desalination technology with recovery of salts and nutrients for crops and demineralized water for RAS. * In DAQs, more than one pump is required for independent recirculation, the amount will depend on the design. The color in the arrows indicates the water loop. Modified from [18,19].
Can Aquaponics Be Utilized to Reach Zero Hunger at a Local Level?

January 2024

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158 Reads

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2 Citations

Meeting the demand for food through sustainable agro-industrial systems has become a concern due to the current state of the planet’s natural resources, population growth, and climate change. To address this, the 2030 Agenda has laid out several strategies to enhance human well-being and protect the planet. This paper focuses on Goal 2, which aims to end hunger, achieve food security, improve nutrition, and promote sustainable agriculture. The first three targets of this goal are as follows: 2.1, ending hunger and ensuring access to nutritious food; 2.2, ending all forms of malnutrition; and 2.3, doubling the agricultural productivity of small-scale food producers. The purpose of this manuscript is to demonstrate how aquaponics can positively impact these three targets by guaranteeing food security through the production of high-quality protein. Aquaponic crops are enriched with organic nutrients from the water they grow in. This not only increases their nutrient content but also their bioactive molecule content, making them excellent for fighting hunger and malnutrition. Moreover, these practices can be adjusted to different scales, making them a viable option for small farmers, women, and rural communities to produce their own food. Consequently, aquaponics can play a crucial role in achieving Zero Hunger locally, with appropriate support.


Bioactive Compounds of Endemic Medicinal Plants (Cuphea spp.) Cultured in Aquaponic Systems: A Short Study

October 2023

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104 Reads

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3 Citations

Aquaculture waters can be associated with the modification of the phytochemical profile in plants when they are used for irrigation; thus, Integrated Agri-Aquaculture Systems such as aquaponics represent a strategy to improve the bioactive content of medicinal plants. This study aimed to analyze the effect caused by cultivation using aquaponics on the modification of the content of bioactive compounds such as phenols, flavonoids, and apigenin in Cuphea hyssopifolia and Cuphea cyanea irrigated with Cyprinus carpio waters. The results of each culture method showed unique differences (p ≤ 0.05) in the concentrations of bioactive compounds and antioxidant activity in Cuphea spp. For C. hyssopifolia in aquaponics, 76% (61.08 ± 7.2 mg g⁻¹ GAEq) of phenols and 50% (5.62 ± 0.5 mg g⁻¹ CAEq) of flavonoids were maintained compared to 20% (16.99 ± 0.4 mg g⁻¹ GAEq) of phenols and 76.5% (8.19 ± 1.6 mg g⁻¹ CAEq) of flavonoids in conventional culture. For C. cyanea in aquaponics, 91% (15.36 ± 0.8 mg g⁻¹ GAEq) of phenols and 47% (3.52 ± 0.6 mg g⁻¹ CAEq) of flavonoids were maintained compared to 24% (14.11 ± 1.3 mg g⁻¹ GAEq) of phenols and 82% (1.79 ± 0.1 mg g⁻¹ CAEq) of flavonoids in conventional culture. An increase of more than 60% in the apigenin content of C. hyssopifolia in aquaponics confirms a eustress effect related to the use of organically enriched waters. The results indicate that aquaponics can promote the biostimulation/elicitation of medicinal plants and increase their bioactive compounds, but this effect does not occur in the same way between species.


A High-Performance Computing Cluster for Distributed Deep Learning: A Practical Case of Weed Classification Using Convolutional Neural Network Models

May 2023

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158 Reads

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5 Citations

One of the main concerns in precision agriculture (PA) is the growth of weeds within a crop field. Currently, to prevent the spread of weeds, automatic techniques and computational tools are used to help to identify, classify, and detect the different types of weeds found in agricultural fields. One of the technologies that can help us to process digital information gathered from the agricultural fields is high-performance computing (HPC); this technology has been adopted to carry out projects requiring extra processing and storage in order to execute tasks with a large computational cost. This paper shows the implementation of an HPC cluster (HPCC), in which image processing (IP) and analysis are executed using deep learning (DL) techniques, specifically, convolutional neural networks (CNNs) with the VGG16 and InceptionV3 models, to classify different weed species. The results show the great benefits of using high-performance computing clusters in PA, specifically for classifying images. To apply distributed computing within the HPCC, the Keras and Horovod frameworks were used to train the CNN models, obtaining the best time with the InceptionV3 model with a value of 37 min 55.193 s using six HPCC cores, obtaining an accuracy of 0.65 as a result.


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Method for detecting the phenolic compounds of Cuphea spp. with the UPC 2 . Conditions in which the samples were introduced: Injection volume: 10 µL, Flow rate: 1.5 mL min − 1 , Column: Viridis BEH 5µm, 4.6 X 100 mm, Column temperature: 40°C, ABPR: 1500 psi. *CO 2 Coleman grade.
Bioactive compounds and growth performance of endemic medicinal plants (Cuphea spp.) cultured in aquaponic system

March 2023

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94 Reads

Aquaculture wastewaters are associated with modifying the phytochemical profile in plants when watered with them, thus, aquaponics is a way to improve medicinal plants' quality. This study aimed to analyse the effect caused by a small-scale aquaponic system integrated with Koi carp in the growth performance and modification of bioactive compounds in Cuphea hyssopifolia and Cuphea cyanea . The results showed the aquaponic system design is suitable for keeping Cuphea spp. in a greenhouse or indoor conditions. No statistically significant differences were found in the growth performance in both Cuphea spp. The results for C. hyssopifolia in aquaponic showed that approximately 76% of phenols and more than half of the flavonoids remained in the dry basis of the plant cultivated in aquaponics compared to conventional culture. The apigenin content increased by > 60% (1.63 mg g ⁻¹ ). The results for C. cyanea in aquaponic showed that the phenolic content remained above, and the flavonoids decreased by 53%. The apigenin content decreased by 40% (0.89 mg g ⁻¹ ). The outcomes indicate that aquaponics can promote biostimulation of medicinal plants and increase their bioactive compounds, however, this effect does not occur in the same way between species.


Chemical composition of hydrocolloids and agar substitute stability obtained from O. ficus-indica and O. robusta. (A) FTIR spectra of mucilage obtained from O. ficus-indica and O. robusta (B) FTIR spectra of pectin obtained from O. ficus-indica and O. robusta. (C) Temperature and minutes to the gel of designed formulates. CT control treatment. (D) Photographs of plates with agar gels with different colors. A catalog of colors was made with experimentation with Opuntia hydrocolloids (pectin and mucilage).
Proposal for forming covalent bonds between the molecules of the hydrocolloids extracted from the waste matter of Opuntia pads that form a gel. (A) Molecular gelation proposal for agar-agar and Opuntia mucilage. (B) Molecular gelation proposal for agar-agar and Opuntia pectin.
Designed Gels of the best treatments. CT (100% agar), T3 (50% agar & 50% pectin OFI), T11 (50% agar & 50% OR pectin). (A) Asymbiotic seed in vitro germination of Cattleya sp. (B) Asymbiotic seed in vitro germination after five days. (C) Asymbiotic seed in vitro germination after ten days. (D) T3 after fifteen days.
Texture profile analysis (TPA) and mechanical performance of obtained gels.
The phenological study between the best treatment, after 4 weeks of observation under in vitro growth conditions whit a meaningful level of p ≤ 0.05.
Development of Agar Substitute Formulated with Mucilage and Pectin from Opuntia Local Waste Matter for Cattleya sp. Orchids In Vitro Culture Media

February 2023

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237 Reads

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6 Citations

The technology for reproducing orchids in vitro has had to evolve due to the demand for these plants and the high cost of the biotechnology used due to the agar, the gelling agent. Consequently, research has tended to search for natural substitutes for agar. Our work describes the use of pectin and mucilage hydrocolloids extracted from the local waste matter of two species of Opuntia (O. ficus-indica and O. robusta) to study as a gelling agent in vitro culture media for Cattleya sp. These hydrocolloids were obtained by alkaline hydrolysis. Subsequently, these were used in proportions of 0.8%, 0.6%, 0.4%, and 0.2% in combination with agar to study the gelation time, texture profile analysis (TPA), seed germination under light and dark conditions, and a phenological study, including orchid analyses of leaves and roots, root and leaf length, seedling height, and width of the best-designed treatment were studied. Our results demonstrate that the treatment composed of 0.4% O. ficus-indica pectin and 0.4% agar improves the germination time, plant growth, and the number of leaves and roots, resulting in a biostimulant formula for optimal in vitro growth of Cattleya sp.


CÁMARA DE CRECIMIENTO PARA LA PRODUCCIÓN DE FORRAJE VERDE HIDROPÓNICO.

February 2023

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77 Reads

El presente modelo de utilidad es una cámara de crecimiento que usa sistemas pasivos de climatización gracias a su diseño, materiales y elementos constitutivos, y en la cual se generan las condiciones para que en su interior se lleve a cabo la producción continua de forraje verde fresco a través del método de hidroponía destinado a la alimentación de animales. La cámara de crecimiento está compuesta por una estructura metálica con tratamiento anticorrosivo que le brinda solidez y rigidez, cubierta con material aislante para conservar las condiciones internas sin importar las del medio exterior circundante, con rieles para la ubicación de bandejas de cultivo que contengan semilla forrajera germinada, las cuales encontrarán las condiciones de temperatura, humedad, ventilación, iluminación y riego que hacen posible su crecimiento y desarrollo en forraje verde fresco que será empleado como complemento alimenticio en la dieta de animales. Esta cámara de crecimiento integra el concepto de uso de energías renovables con la instalación preferiblemente en el techo de boiler solar; paneles fotovoltaicos; baterías fotovoltaicas; y extractor eólico. De un modo preferido la cámara de crecimiento tendrá las conexiones que le permitan recircular la solución de riego con el objetivo de rehusar y de esta manera ahorrar.


A Potential Alternative for Agar in In Vitro Culture Media Based on Hydrocolloids Present in Nopal: General Structure and Mechanical Properties

January 2023

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185 Reads

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6 Citations

In Vitro culture is a technique commonly used for plant research. Nevertheless, it is more expensive than traditional methods of production, due to the use of the culture medium gelling agent called agar. Recent studies have been searching for alternative substances in raw materials with the same characteristics but which can be extracted easier than agar. The dietary fiber of the nopal cactus (Opuntia) is a rich source of hydrocolloids (pectin and mucilage). These hydrocolloids have the ability to gel in combination with the indicated solution. In this chapter, we will focus on the study of the hydrocolloids from nopal cactus to replace agar partially and/or totally as a gelling agent using in vitro culture media benefiting from the molecular structure and mechanical properties of the compounds.


Citations (56)


... This is also associated with greater inefficiency in the FCR, reflecting efficiency problems due to intense competition for resources in the same space. Examples of this phenomenon can be seen in previous studies, such as those by Félix-Cuencas et al. [62], Rakocy et al. [72], and Sabwa et al. [78]. ...

Reference:

Production Costs and Growth Performance of Tilapia (Oreochromis niloticus) in Intensive Production Systems: A Review
Effect of three productive stages of tilapia (Oreochromis niloticus) under hyper-intensive recirculation aquaculture system on the growth of tomato (Solanum lycopersicum)
  • Citing Article
  • October 2021

Latin American Journal of Aquatic Research

... In this context, the modification of bioactive compound concentrations in Cuphea spp. irrigated with aquaponic waters was explored, highlighting the potential of aquaponics in promoting the biostimulation of medicinal plants [7]. ...

Bioactive Compounds of Endemic Medicinal Plants (Cuphea spp.) Cultured in Aquaponic Systems: A Short Study

... The CNN-based approaches were considered the best with 97% accuracy. Then, Lopez-Martinez et al (López-Martínez et al. 2023) implemented a high-performance computing cluster (HPCC) where the image processing and analysis were done using deep learning (VGG16 and InceptionV3 models) techniques. Fatima et al (Fatima et al. 2023) developed a YOLOv5-based lightweight weed detection mechanism to aid laser weeding robots. ...

A High-Performance Computing Cluster for Distributed Deep Learning: A Practical Case of Weed Classification Using Convolutional Neural Network Models

... Another interesting approach is the possibility of using pectin and mucilage from Opuntia spp. residues as substitutes for agar in culture media (Sánchez-Gutiérrez et al., 2023). ...

Development of Agar Substitute Formulated with Mucilage and Pectin from Opuntia Local Waste Matter for Cattleya sp. Orchids In Vitro Culture Media

... The food industry has been incorporating a plethora of gelling agents besides agar, the majority of which refer to hydrocolloids such as carrageenan, pectins, and sodium alginate, in an effort to create edible products with a wide range of properties depending on the scope of their intended use (Oakenfull and Glicksman, 1987;Imeson, 2012). Together with gums and starches, these gelling agents have already been evaluated and tested as a substitute for culture media of microbiological and tissue cultures, and have been successful in providing cheaper alternatives, or at least partial substitutes of agar Jain et al., 2005;Sánchez-Gutiérrez et al., 2023). ...

A Potential Alternative for Agar in In Vitro Culture Media Based on Hydrocolloids Present in Nopal: General Structure and Mechanical Properties

... Haar classifier Object detection algorithm that uses Haar features-the changes in intensity between adjacent rectangles of pixels Wilson and Fernandez (2006), Lopez-Tejeida et al. (2023) Euclidean distance matrix analysis The length of a straight line between two points Cisar et al. (2021), Muñoz-Benavent et al. (2018), Deng et al. (2022), Pache et al. (2022), Petrellis (2021), Bonofiglio et al. (2022), Costa et al. (2013) Feature pyramid networks (FPN) Used to detect objects at different scales Lin et al. (2017), Xu et al. (2023), Wen et al. (2023), Al Duhayyim et al. (2022), Yang, Shi, and Wang (2022), Zhu et al. (2022) Gaussian mixture model Clustering algorithm-probability based. Used to group data points together using a 'soft clustering' technique , Saberioon and Císar (2018), Böer et al. (2023), Al Duhayyim et al. (2022), Chang et al. (2022) K-means Clustering algorithm-distance based. ...

An Improved Method to Obtain Fish Weight Using Machine Learning and NIR Camera with Haar Cascade Classifier

... Nonetheless, in real-world operations, the accuracy of chick sex identification through cloacae detection remains reliant upon the expertise and experience of the testing personnel. Even skilled technicians can only achieve an accuracy of approximately 95%, which tends to diminish with prolonged identification time (Kaixuan et al., 2022;Escamilla-García et al., 2022). ...

A new application of morphometric variables and image processing to determine day-old chicken sex

Journal of Applied Research and Technology

... Rennet casein offers the development of micellar structure and the presence of calcium, hence a texturizing ability, through the action of enzymes (chymosin and pepsin) that are in the calf's abomasum. The biological action developed to favor the aggregation of micelles in rennet can also be exploited for the production of casein fibers without the use of chemicals [92]. Data obtained in this case for fibers extruded into a warm calcium-enriched aqueous solution were rather consistent, more specifically a tensile strength equal to 42.16 ± 3.17 MPa, a Young's modulus of 2.08 ± 0.26 GPa, and an elongation to break of 1.89 ± 0.6. ...

Electrospun Casein Fibers obtained from Revalued Milk with mechanical and antibacterial properties
  • Citing Article
  • August 2022

Arabian Journal of Chemistry

... In order to reduce the environmental impact and take advantage of the circular economy". Recently, Flores-Nieves et al. (2022) reported the acceptance of anaerobic digestion by end-users as a waste management method and the use of biogas and biomass as energy suppliers and biofertilizers, respectively. It's crucial for students to understand the significance of anaerobic digestion in waste management, as it offers numerous benefits such as producing valuable byproducts. ...

Revaluation of Local Waste through an Ecotechnologies Strategic Plan: A Case Study with Digesters

... Members of the Stenotrophomonas genus are commonly found in association with plants, and certain species within this genus are categorized as plant growth-promoting bacteria (PGPB). They are employed for their beneficial effects as biofertilizers and biocontrol agents in agricultural practices [4,6]. Within the Stenotrophomonas genus, we encounter Stenotrophomonas geniculata, formerly known as Pseudomonas geniculata [7]. ...

INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY Full Length Article Effect of Two Strains of Stenotrophomonas rhizophila Isolated from Compost on the Growth of Tomato, Lettuce, and Jalapeno Pepper

International Journal of Agriculture and Biology