Frank R. Thompson’s research while affiliated with University of Missouri and other places

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Publications (160)


Illustration of the decision support process (A) developed by Bonnot et al. (2019) for landscape conservation design. The process combines integrated landscape models that are spatial and temporal in nature (B) into a structured decision making to informing specific decisions and examine overarching questions about strategies and assumptions in landscape conservation that landscape planners commonly face.
Placement of simulated conservation activities within Conservation Opportunity Areas (COAs) by states within the Gulf Coastal Plains and Ozarks region. At the time of this study, 8 states in the region had outlined COAs in which to focus landscape conservation to address threats such as projected urbanization over time (areas projected to be developed by 2100 shown). Under the protection and restoration and enhancement strategies, patch units were selected and management was simulated over time within conservation opportunity areas. Selection of patches was dynamic and interactive with model projections of urbanization.
Projections of A) prairie warbler and B) wood thrush population growth 7 conservation simulations within Conservation Opportunity Areas (COAs) across the Gulf Coastal Plains and Ozarks region. A baseline simulation that considers climate and land‐use change impacts on habitat is compared with simulations of conservation strategies. Conservation strategies reflected 2 different approaches: protection of high quality habitats from development or restoration and enhancement of low and moderate quality habitats. Conservation simulations also compared prioritization of connected patches within the landscapes or a random selection. Finally, restoration and enhancement simulations compared scenarios that maintained habitat management throughout the entire time period versus scenarios where habitat management on 50% of patches is discontinued.
Spatial projections of population growth or decline from 2010—2100 by prairie warblers across the Gulf Coastal Plains and Ozarks region in response to landscape conservation strategies. A baseline simulation that considers climate and land‐use change impacts on habitat is compared with simulations of conservation strategies across Conservation Opportunity Areas (COAs) by states across the region. Conservation strategies reflected protection of high quality habitats from development or restoration and enhancement of low and moderate quality habitats. The specific conservation simulations shown here also focused on connectivity within the landscapes and assumed habitat management is maintained throughout the entire time period.
Estimated risk to state A) prairie warbler and B) wood thrush populations within the Gulf Coastal Plains and Ozarks region under baseline and conservation strategies. Habitat conservation was simulated within the Conservation Opportunity Areas (COAs) in 8 states (grouped with the gray background). Risk is quantified as expected (mean) maximum decline in each state for each species and reflects the most likely maximum decline each population could face through 2100. At the time of this study, 5 states had not designated COAs. Conservation strategies reflected 2 different approaches: protection of high quality habitats from development or restoration and enhancement of low and moderate quality habitats. Conservation simulations also compared prioritization of connected patches within the landscapes or a random selection. Finally, restoration and enhancement strategies also compared scenarios that maintained habitat management throughout the entire time period versus scenarios where habitat management on 50% of patches is discontinued.
Demonstrating a decision support process for landscape conservation design
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September 2024

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35 Reads

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Nate D. Muenks

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Frank R. Thompson

Despite the recent increase in landscape conservation and the design processes agencies are undertaking, there remains an implementation gap due to an inability to evaluate general strategies and account for uncertainties faced by managers. We demonstrated how a decision support process (DSP), recently developed to inform landscape conservation design, can address uncertainties and complexities inherent in landscape conservation to facilitate long‐term, large‐scale conservation planning. We applied the DSP to landscape conservation efforts within conservation opportunity areas (COA) of states in the Gulf Coastal Plains and Ozarks region. We engaged state planners within the region to identify important landscape conservation uncertainties they face in planning. We developed, simulated, and modeled the impacts of conservation addressing 3 uncertainties identified by state wildlife managers and evaluated the impacts by examining the responses of state and local populations of 2 bird species of conservation concern, prairie warbler (Setophaga discolor) and wood thrush (Hylocichla mustelina). The responses of prairie warbler populations to conservation strategies indicated that both approaches of protecting quality habitat from land‐use change and restoring and enhancing lower quality and nonhabitat improved their viability at regional, statewide, and COA scales. However, we noted that the relative effectiveness of strategies varied among states in ways that suggest a state's process for delineating COAs and what threats they face could influence which conservation approach to consider. Our findings highlight the need for regional coordination and the use of decision‐support processes to guide effective conservation at landscape scales.

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Songbird annual productivity declines with increasing soil lead contamination around nests

May 2024

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10 Reads

Ornithological Applications

Frank R Thompson

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Rebecka L Brasso

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David E Mosby

Songbirds incidentally ingest soil contaminated with lead and several species in the Southeast Missouri Lead Mining District have a negative relationship between soil lead concentration and reproduction. We used an individual-based model (IBM) to simulate nesting processes throughout the breeding season to estimate annual productivity for 5 songbirds in relation to soil-lead concentration. We modeled daily nest survival and number fledged in relation to soil lead and incorporated these relationships into the IBM using a Bayesian approach that fully captured parameter uncertainty and process variation. The proportion of the posterior distribution for the effect of soil lead on daily nest survival was mostly negative for Pipilo erythrophthalmus (Eastern Towhee), Passerina cyanea (Indigo Bunting), Cardinalis cardinalis (Northern Cardinal), Sialia sialis (Eastern Bluebird; f = 0.972, 0.990, 0.741, 0.581, respectively), and slightly positive for Spizella pusilla (Field Sparrow; f = 0.680). The proportion of the posterior distribution for the effect of soil lead on the number fledged from successful nests was mostly negative for S. pusilla, P. erythrophthalmus, and C. cardinalis (f = 0.867, 0.585, 0.508, respectively) and positive for P. cyanea and S. sialis (f = 0.773, 0.744). Simulated annual productivity decreased by 0.04–1.47 young/female/year among species across the range of soil lead concentrations, with the greatest declines for P. erythrophthalmus and P. cyanea. The probability of fledging one or more young changed from 51% to 15% for P. erythrophthalmus, 57% to 23% for P. cyanea, 60% to 48% for C. cardinalis, 94% to 84% for S. sialis, and 57% to 64% for S. pusilla as soil-lead concentration around a nest increased from 20 to 4,000 ppm. Most nest failures were the result of predation; therefore, we suggest lead may have affected birds’ behavior at the nest, or affected nest site quality, which resulted in higher nest predation.


Survival and movements of brown‐headed nuthatches after translocation to the Missouri Ozarks

July 2023

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41 Reads

The brown‐headed nuthatch ( Sitta pusilla ) was likely extirpated from Missouri in the early 1900s as a result of habitat loss through extensive logging. Conservation partners including the Missouri Department of Conservation, United States Forest Service, University of Missouri, and others, relocated 102 brown‐headed nuthatches from Ouachita National Forest in Arkansas to Mark Twain National Forest in Missouri in 2020 and 2021 to establish a local population. We tracked 50 individuals for 24 ± 11 (median ± SD) days after release using radio telemetry and monitored movements in relation to sex and whether a bird was captured alone or as part of a group. We examined 25‐day survival using a spatial Cormack Jolly Seber (sCJS) model to account for likely dispersal outside of our study area. All birds survived capture, transport, and release. The 25‐day survival estimate was 0.56 (95% CI = 0.36–0.78) in 2020 and 0.68 (95% CI = 0.46–0.89) in 2021. Mean total distance moved following release was 5,670 (SD = 3,407) m and mean daily movement was 243 (SD = 135) m which was less than the mean daily dispersal distance estimated from our sCJS model (420 m, SD = 221). Our short‐term monitoring suggests initial success of the translocation, but continued monitoring is needed to evaluate long‐term success. Our survival analysis approach, which included movement data, illustrates the importance of considering dispersal when estimating survival.


Urban land cover and El Nino events negatively impact population viability of an endangered North American songbird

June 2023

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188 Reads

Population dynamics of migratory species are influenced by land use and climate patterns experienced across the full annual cycle. Identifying environmental factors influencing productivity, survival, and their relative contributions to abundance and population growth is critical for the recovery and management of at-risk species in the face of continuing global change. The golden-cheeked warbler (Setophaga chrysoparia) is an endangered passerine that breeds exclusively in the mixed Ashe juniper (Juniperus ashei)-oak (Quercus) woodlands of Central Texas, USA, and winters at high elevations in Central America. We evaluated the effects of precipitation, climate, and land cover on golden-cheeked warbler productivity, adult male survival, and territory abundance using data from a long-term monitoring site, the Balcones Canyonlands Preserve, in Austin, Texas. We jointly analyzed annual productivity , mark-recapture, and territory count data collected on 10 plots from 2011 to 2019 in an integrated population model. The number of young fledged per male territory was negatively related to percent urban land cover within 1 km of monitoring plots, and adult male survival was negatively related to a strong El Niño event. Estimates of population growth and abundance indicated a decline in abundance across our study period. We forecasted population viability 25 years into the future given increases in urban development and frequency of El Niño events. Quasi-extinction probability increased from 0.17 under current urban land cover conditions and El Niño frequency to 0.41 under the scenario of a 10% increase in urban development around all plots and an increase in El Niño frequency. Productivity and adult survival were positively correlated with population growth, highlighting the need for conservation and management actions to maximize these vital rates on the breeding grounds and range-wide.


Eastern Whip-poor-wills have larger nonbreeding home ranges in areas with more agriculture and forest fragmentation

December 2022

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69 Reads

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3 Citations

Ornithological Applications

Migratory bird populations can be limited by events in disparate parts of the world. Birds wintering in tropical regions are facing rapid habitat loss, climate change, and intensive agricultural regimes, potentially contributing to population declines. However, an understanding of basic nonbreeding ecology of species, such as habitat and space use, is critical for determining if this is the case. Populations of the nocturnal/crepuscular Eastern Whip-poor-will (Antrostomus vociferus) have declined by 70% since the 1960’s, yet data on the species are sparse outside of the breeding season. We extracted data from 41 archival GPS tags deployed on whip-poor-wills and estimated nonbreeding home ranges and land covers used. We used satellite imagery and stable carbon and nitrogen isotope values from claws grown during the nonbreeding season to analyze how land cover and habitat moisture impacted home range size and relative trophic level. Forest was by far the most prevalent land cover used by whip-poor-wills, occurring in all home ranges and accounting for >80% of diurnal roosting points. We found that less forest, the presence of agriculture, and more edge (irrespective of land cover) were associated with larger home ranges. Stable isotope values differed by broadscale ecoregion but not local land cover characteristics in our study, indicating that regional idiosyncrasies or broadscale processes can be more important in determining stable isotope ratios. Our findings suggest that the loss, fragmentation, and replacement of forest by agriculture in the core of the whip-poor-will’s nonbreeding range may represent a threat to the species, as they rely heavily upon forest, and appear to alter space use in response to changes in forest cover.


Evaluation of seasonal site-level demography and management for northern bobwhite using integrated population models

November 2022

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64 Reads

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2 Citations

Ecological Modelling

Understanding the effects of landscape management on northern bobwhite (Colinus virginianus) population growth requires information on seasonal- and stage-specific demographic parameters linked across the full annual cycle. We evaluated site-level seasonal dynamics and population growth of bobwhites in southwest Missouri and compared differences between three extensively and two intensively managed sites from 2016 to 2019. Extensively managed sites were continuous tracts of native prairie. Intensively managed sites were composed of smaller native and non-native grassland units interspersed with strip crops, food plots, and woody field borders. We radio-marked adults and broods to estimate survival and productivity, conducted spring whistle counts to estimate abundance and developed a two-season, two-stage, two-sex integrated population model to estimate population dynamics. The number of young hatched per female-incubated nest was greater on the three extensively managed sites compared to the two intensively managed sites. Six-month period survival of adults during the breeding season was also greater on the three extensively managed sites compared to the two intensively managed sites. One hundred-day juvenile breeding season survival varied among sites and was highest on Talbot, compared to juvenile breeding season survival on the other four study sites. Six-month, non-breeding season period survival was lowest on the two smallest extensively managed sites, Stony Point Prairie and Shelton Conservation Area compared to non-breeding season survival on the other three study sites. Annual changes in bobwhite abundance were weakly correlated with female fecundity, though this positive relationship was stronger on extensively managed sites. Intensively managed sites exhibited low mean fecundity and breeding season adult survival relative to those that resulted in a stable population. Populations across sites declined from 2016 to 2019 and estimates of annual population growth rates overlapped across sites. Differences between observed changes in bobwhite abundance and estimates of observed demographic rates at some sites suggest unmeasured processes such as movement or bias associated with data and model assumptions influenced estimated vital rates. Overall, our integrated population model was an effective tool for understanding site-level seasonal dynamics and population growth of bobwhites. Based on comparisons of demography between extensively and intensively managed sites, we suggest increased native grassland cover managed with prescribed fire, low intensity grazing, and high mowing may increase bobwhite nesting success and breeding season adult survival, however, achieving stable or increasing rates of population growth may also require increased juvenile breeding season and non-breeding season survival.



Scale dynamics approach to landscape conservation design. Each goal defines pathways that describe what to do (goals scale), how to do it (implementation scale), where to do it (spatial scale), and for what benefits (ecological scale). Multiple maps, each corresponding to a project goal, communicate the landscape conservation design to partners, stakeholders, and the public
Application of the scale dynamics approach to two landscape conservation design projects that overlap in space and jurisdiction, the Conservation Blueprint of the South Atlantic Landscape Conservation Cooperate and the Statewide Conservation Scenarios Project of the Peninsular Florida Landscape Conservation Cooperative. Mismatches, indicated by the solid black line, arose from differences in goals and implementation, and largely non-overlapping list of species and ecosystems. AL = Alabama, FL = Florida, GA = Georgia, NC = North Carolina, SC = South Carolina, and VA = Virginia, U.S.A
A scale dynamics approach to integrate landscape conservation within and across jurisdictional boundaries

June 2022

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51 Reads

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4 Citations

Landscape Ecology

Context Public-private partnerships are needed to conserve landscapes, waterscapes, and seascapes. Landscape conservation design (LCD) translates shared objectives into spatial priorities to guide conservation efforts and foster collaboration among partners at the landscape level. Objective We examined LCD projects in the eastern United States to identify implementation and coordination challenges and propose solutions that facilitate integration across projects in instances when coordination and continuity of conservation efforts is paramount. Methods We apply a scale dynamics approach to LCD that identifies what conservation actions to take (goals scale), how to conduct those actions (implementation scale), and where to take those actions (spatial scale) to benefit species and ecosystems (ecological scale). Additional steps include identify who (jurisdiction scale) will take those actions and when (threats scale) those actions should be taken. Results We found that although LCD projects span ecological, spatial, temporal, and jurisdictional scales, focusing only on spatial or ecological scales resulted in poor integration among adjacent projects when few species or ecosystems were the target of more than one LCD project. Conclusions Variation in approach among LCD projects poses a challenge to project coordination and project integration with existing conservation planning efforts and products. This challenge exists within and across jurisdictional boundaries. The scale dynamics approach provides a trans-project basis for integration across multiple LCD projects.


FIG. 1-Effective detection radius by observer for surveys estimating density of Woodhouse's scrub-jays across the Balcones Canyonlands Preserve, Austin, Texas, 2011-2014.
FIG. 2-Predicted density of Woodhouse's scrub-jays (individuals/ha) as a function of predictor variables at the patch scale (top), forest scale (middle), and landscape scale (bottom) from the most supported spatial model across the Balcones Canyonlands Preserve, Austin, Texas, during 2011-2014.
Parameter estimates, SE, 95% confidence intervals (LCL, UCL), and P values (P) for variables included in the most supported spatial model (patch + forest + landscape) evaluating habitat associations of Woodhouse's scrub-jays (Aphelocoma woodhouseii texana) within the Balcones Canyonlands Preserve (BCP), Travis County, central Texas, 2011-2014. These models also include the covariates of observer, tree basal area, and slope estimating the detection process.
DENSITY AND HABITAT ASSOCIATIONS OF THE WOODHOUSE'S SCRUB-JAY IN CENTRAL TEXAS

April 2022

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31 Reads

The Southwestern Naturalist

Woodhouse's scrub-jay (Aphelocoma woodhouseii texana) is a relatively understudied subspecies inhabiting juniper scrub and woodland in central Texas. We estimated density and examined habitat associations at the eastern edge of their breeding range. Scrub-jays were strongly associated with intermediate proportions of juniper land cover at a 100-m scale and showed lower density in areas of greater mixed oak-juniper woodland and greater urban land cover at a 1-km scale.


High spatiotemporal overlap in the non‐breeding season despite geographically dispersed breeding locations in the eastern whip‐poor‐will ( Antrostomus vociferus )

January 2022

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167 Reads

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15 Citations

Aim A full annual cycle approach to conservation and understanding of regional population trends requires an understanding of migratory connectivity. We present tracking data on the eastern whip‐poor‐will (Antrostomus vociferus), a Neotropical migrant that has declined by 70% in recent decades. When and where populations of this species are limited throughout the annual cycle is poorly understood. Location Breeding area: midwestern United States; passage area and winter area: midwestern/southern United States, Mexico, Central America. Methods We utilized data from 52 archival GPS tags from five breeding areas covering a 9.5‐degree latitudinal span (~1000 km) of the whip‐poor‐will breeding range in the summers of 2017 and 2019. We identified migratory routes and spatiotemporal bottlenecks, stopover and wintering locations, calculated migratory connectivity throughout migration and on the wintering grounds and tested predictions for three latitudinal connectivity patterns. Results Whip‐poor‐wills circumvented the Gulf of Mexico, and populations across a large latitudinal gradient came together in eastern Texas in early October, resulting in decreased connectivity throughout migration. Breeding‐winter migratory connectivity was low (MC = 0.22 ± 0.12), with extensive overlap of core wintering areas in southern Mexico and Guatemala. The overlap of wintering areas by individuals from dispersed breeding latitudes suggests that whip‐poor‐wills most closely resemble telescopic migrants. Main conclusions Circumventing the Gulf of Mexico influenced connectivity in the whip‐poor‐will, funnelling individuals into a small region in eastern Texas in migration and likely influencing breeding‐winter connectivity. Thus, geographically dispersed breeding populations overlap in space and time during migration and winter, and non‐breeding season conditions affecting populations (both positively and negatively) impact individuals from across the core breeding range. For example, extensive deforestation occurring in the whip‐poor‐will's core wintering area likely impacts individuals from all five deployment locations. We demonstrate that combining multiple indices of spatiotemporal cohesion is critical to fully understand how migratory animals are distributed in the non‐breeding season.


Citations (86)


... Near airports, GPS transmitters have been used to characterize the spatial flight patterns of migratory Black Vultures (Coragyps atratus) and Turkey Vultures (Cathartes aura) to inform aircraft traffic decisions to reduce the frequency of collisions (Walter et al. 2012). Similarly, GPS data from soaring raptors have been used to inform renewable energy and infrastructure siting or operating decisions (e.g., wind turbines [Katzner et al. 2012, Miller et al. 2014 [Skinner et al. 2023]) that can be used to inform full-annual-cycle conservation. ...

Reference:

Conservation of North American migratory birds: insights from developments in tracking technologies
Eastern Whip-poor-wills have larger nonbreeding home ranges in areas with more agriculture and forest fragmentation
  • Citing Article
  • December 2022

Ornithological Applications

... We investigated bobwhite demography across 5 sites that ranged from predominately large patches of native grassland managed with prescribed fire and grazing to sites consisting of a mix of smaller patches of grassland, cropland, and woody cover. A site-level, full annual cycle bobwhite demographic analysis revealed sites with larger continuous tracts of native grassland cover had greater adult breeding season and nest survival compared to sites with mixed cover types (Sinnott et al. 2023b). Our objectives here were to further evaluate variation in breeding season demography among sites by determining relationships between management actions and vegetation composition on bobwhite nest and adult breeding season survival. ...

Evaluation of seasonal site-level demography and management for northern bobwhite using integrated population models
  • Citing Article
  • November 2022

Ecological Modelling

... Adopting a scale dynamics approach, Rittenhouse et al. (2022) examine how an explicit recognition of different types of scale may impact the coordination and success of conservation programs in their Perspective "A scale dynamics approach to integrate landscape conservation within and across jurisdictions". Analyzing landscape conservation design projects across the eastern United States, the authors demonstrate that focusing only on the location and extent of conservation activities (spatial scale) and the ecological benefits of those activities (ecological scale) hindered coordination across projects and reduced the continuity of conservation activities. ...

A scale dynamics approach to integrate landscape conservation within and across jurisdictional boundaries

Landscape Ecology

... This information can then be used to identify patterns which can aid in conservation planning, a critical need given the large number of migratory birds that are declining globally (Runge et al. 2015, Rosenberg et al. 2019, Phillips et al. 2022. Migratory connectivity has proven to be a valuable concept to quantify migratory patterns within and across populations and to assess their sensitivity to environmental change (Webster and Marra 2005, Bauer et al. 2016, Skinner et al. 2022. Understanding geographical linkages of migratory birds can indeed identify potential threats (Trierweiler et al. 2014), explain population dynamics , and increase our understanding of the general influence of migration behavior on individual and population-specific fitness components (Bauer et al. 2016). ...

High spatiotemporal overlap in the non‐breeding season despite geographically dispersed breeding locations in the eastern whip‐poor‐will ( Antrostomus vociferus )

... Habitat management for birds generally focuses on vegetation structure but there are potential reasons why the composition may also be important. For example, Eastern Whip-poor-will (Antrostomus vociferus) and Chuckwill's-widow (Antrostomus carolinensis) are abundant in restored open forests (Thompson III et al. 2022). This may be because the open structure of savanna and woodland facilitates these birds' nocturnal foraging and mating displays. ...

Woodland restoration and forest structure affect nightjar abundance in the Ozark Highlands
  • Citing Article
  • January 2022

Journal of Wildlife Management

... For survival, we used binomial models that accounted for exposure time in a Bayesian framework (Shaffer, 2004;Sinnott et al., 2022). Daily survival was calculated as: ...

Northern Bobwhite juvenile survival is greater in native grasslands managed with fire and grazing and lower in non-native field borders and strip crop fields

Ornithological Applications

... Juvenile survival was likely high on native grasslands that were burned and grazed as these disturbances expose bare ground, allowing movement and facilitating escape from predators, while also maintaining vegetation height for cover (Taylor et al. 1999, Harper et al. 2015, Kamps et al. 2017. These disturbances may have improved foraging efficiency, body condition, and growth of young by removing accumulated litter and increasing insect abundance (Engle et al. 2008, Doxon and Carroll 2010, Gruchy and Harper 2014, Sinnott et al. 2021a). Most burning occurred in winter and spring, and no management units were burned during the summer brood-rearing period, ensuring herbaceous cover was available for broods. ...

Early Hatch and Managed Native Grasslands Minorly Improve Bobwhite Juvenile Body Condition
  • Citing Article
  • October 2021

The American Midland Naturalist

... First, for Northern Bobwhite, canopy cover and canopy height (quadratic and linear terms respectively) were not significant in either the full model or the single-factor models. Thus, our study does not add significant novel insight into the decades-old pursuit to obtain detailed knowledge of this species' habitat requirements (Stoddard 1931, Johnson and Guthery 1988, Spears et al. 1993, Guthery 1997, Kopp et al. 1998, Lusk et al. 2006, Janke et al. 2015, Mosloff et al. 2021. Northern Bobwhite are an important species for recreational harvesting (hunting) and their populations are declining in many parts of their geographic range for a multitude of reasons (Brennan 1991, Church et al. 1993, Lusk et al. 2002, Veech 2006, Twedt et al. 2007, Hernández et al. 2013, Olsen et al. 2016. ...

Northern bobwhite select for shrubby thickets interspersed in grasslands during fall and winter

... Strong evidence supports the claim that varying stresses to trees are inciting factors leading to an increase in A. bilineatus (and other wood borer) abundance. Wood borers that are currently not strongly correlated with mortality events or considered only of minor concern could be expanding ranges throughout the region or reach outbreak level occurrences more frequently throughout the range of hosts, especially as drought is predicted to increase in the future [116,[144][145][146][147]. A looming threat is the little--understood biology and ecologies of many of these insect species, which leads to surprises when optimal conditions create seemingly novel or unanticipated outbreaks, as was the case with red oak borer, leaving managers not fully prepared when such events occur. ...

Indirect effects mediate direct effects of climate warming on insect disturbance regimes of temperate broadleaf forests in the central U.S.

... High deer densities limit the recruitment of oaks and other hardwoods to the canopy (Russell and Fowler 2004;Andruk et al. 2014;Van Auken et al. 2023). Low-to moderate-severity prescribed fires in woodlands can reduce understory density and increase oak regeneration (primarily resprouting after canopy mortality), but do not reduce fuel loads (Yao et al. 2012;Reidy et al. 2016Reidy et al. , 2021. However, any mortality of canopy trees reduces habitat quality for golden-cheeked warblers (Reidy et al. 2016(Reidy et al. , 2021. ...

Effects of prescribed fire on fuels, vegetation, and Golden-cheeked warbler (Setophaga chrysoparia) demographics in Texas juniper-oak woodlands: An update six years post-fire
  • Citing Article
  • July 2021

Forest Ecology and Management