Fabrizio Ladu’s research while affiliated with Polytechnic Institute of New York University and other places

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Publications (7)


Data-driven modelling of social forces and collective behaviour in zebrafish
  • Article

January 2018

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59 Reads

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59 Citations

Journal of Theoretical Biology

Adam K Zienkiewicz

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Fabrizio Ladu

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[...]

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Zebrafish are rapidly emerging as a powerful model organism in hypothesis-driven studies targeting a number of functional and dysfunctional processes. Mathematical models of zebrafish behaviour can inform the design of experiments, through the unprecedented ability to perform pilot trials on a computer. At the same time, in-silico experiments could help refining the analysis of real data, by enabling the systematic investigation of key neurobehavioural factors. Here, we establish a data-driven model of zebrafish social interaction. Specifically, we derive a set of interaction rules to capture the primary response mechanisms which have been observed experimentally. Contrary to previous studies, we include dynamic speed regulation in addition to turning responses, which together provide attractive, repulsive and alignment interactions between individuals. The resulting multi-agent model provides a novel, bottom-up framework to describe both the spontaneous motion and individual-level interaction dynamics of zebrafish, inferred directly from experimental observations.



Acute caffeine administration affects zebrafish response to a robotic stimulus

April 2015

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124 Reads

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68 Citations

Behavioural Brain Research

Zebrafish has been recently proposed as a valid animal model to investigate the fundamental mechanisms regulating emotional behavior and evaluate the modulatory effects exerted by psychoactive compounds. In this study, we propose a novel methodological framework based on robotics and information theory to investigate the behavioral response of zebrafish exposed to acute caffeine treatment. In a binary preference test, we studied the response of caffeine-treated zebrafish to a replica of a shoal of conspecifics moving in the tank. A purely data-driven information theoretic approach was used infer the influence of the replica on zebrafish behavior as a function of caffeine concentration. Our results demonstrate that acute caffeine administration modulates both the average speed and the interaction with the replica. Specifically, zebrafish exposed to elevated doses of caffeine show reduced locomotion and increased sensitivity to the motion of the replica. The methodology developed in this study may complement traditional experimental paradigms developed in the field of behavioral pharmacology. Copyright © 2015. Published by Elsevier B.V.


Biologically inspired robots elicit a robust fear response in zebrafish

March 2015

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12 Reads

Proceedings of SPIE - The International Society for Optical Engineering

We investigate the behavioral response of zebrafish to three fear-evoking stimuli. In a binary choice test, zebrafish are exposed to a live allopatric predator, a biologically-inspired robot, and a computer-animated image of the live predator. A target tracking algorithm is developed to score zebrafish behavior. Unlike computer-animated images, the robotic and live predator elicit a robust avoidance response. Importantly, the robotic stimulus elicits more consistent inter-individual responses than the live predator. Results from this effort are expected to aid in hypothesis-driven studies on zebrafish fear response, by offering a valuable approach to maximize data-throughput and minimize animal subjects.


Live Predators, Robots, and Computer-Animated Images Elicit Differential Avoidance Responses in Zebrafish

March 2015

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241 Reads

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68 Citations

Zebrafish

Emotional disturbances constitute a major health issue affecting a considerable portion of the population in western countries. In this context, animal models offer a relevant tool to address the underlying biological determinants and to screen novel therapeutic strategies. While rodents have traditionally constituted the species of choice, zebrafish are now becoming a viable alternative. As zebrafish gain momentum in biomedical sciences, considerable efforts are being devoted to developing high-throughput behavioral tests. Here, we present a comparative study of zebrafish behavioral response to fear-evoking stimuli offered via three alternative methodologies. Specifically, in a binary-choice test, we exposed zebrafish to an allopatric predator Astronotus ocellatus, presented in the form of a live subject, a robotic replica, and a computer-animated image. The robot's design and operation were inspired by the morphology and tail-beat motion of its live counterpart, thereby offering a consistent three-dimensional stimulus to focal fish. The computer-animated image was also designed after the live subject to replicate its appearance. We observed that differently from computer-animated images, both the live predator and its robotic replica elicited robust avoidance response in zebrafish. In addition, in response to the robot, zebrafish exhibited increased thrashing behavior, which is considered a valid indicator of fear. Finally, inter-individual response to a robotic stimulus is more consistent than that shown in response to live stimuli and animated images, thereby increasing experimental statistical power. Our study supports the view that robotic stimuli can constitute a promising experimental tool to elicit targeted behavioral responses in zebrafish.


Sociality Modulates the Effects of Ethanol in Zebra Fish

May 2014

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140 Reads

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52 Citations

Alcoholism Clinical and Experimental Research

The complex social behavior exhibited by zebra fish is often leveraged in preclinical studies to investigate whether and how psychoactive compounds modulate inter individual interactions. Due to theoretical and methodological constraints, previous studies on the effects of ethanol (EtOH) on social behavior focused on homogeneous groups in which all individuals were treated, thereby limiting the possibility of isolating all the intervening variables. To identify how a social group affects the individual response to EtOH, we quantified the behavior of a single treated individual (acute 0.00, 0.25, 0.50, and 1.00% concentration/volume) swimming together with a group of untreated subjects or alone. A novel in-house-developed automated tracking system was utilized to extract the trajectories of each subject and analyze individual and social behavior. Specifically, we characterized the locomotion of each individual, the cohesion and degree of alignment of the group of untreated subjects, and the interaction between treated and untreated subjects. Individual response to high EtOH concentrations varied depending on the presence or absence of conspecifics. Specifically, EtOH-exposed subjects swam faster when group-tested than in isolation. Remarkably, the presence of the exposed individual substantially influenced the behavior of the untreated subjects. Thus, untreated subjects swam faster when the treated individual was exposed to intermediate EtOH concentrations, without varying their cohesion and degree of alignment. No change in the distance between treated and untreated subjects was found; however, the likelihood that the swimming direction of the treated individual anticipated the response of the group was influenced by EtOH concentration. Our results demonstrate the feasibility of exposing a single individual to EtOH and test it together with untreated subjects. This approach has the potential to unravel the social determinants of individual response to alcohol, by enabling us to dissociate EtOH exposure from sociality.


Figure 1. Experimental setup. (a) Top view of the experimental tank with two robotic arms on each side (the fish and the replica are circled); the tank-wide axis is marked in white bidirectional arrow; (b) painted plastic replica of the zebrafish that is attached to the end-effector.
Figure 2. Trajectories. (a) Fish and conspecific; and (b) fish and replica.
Figure 3. Transfer entropy computation. (a) Sample (normalized) tank-wide position trajectories for a fish (red) interacting with a conspecific (blue); for this sample, TE fish→stimulus = 0.615 bits and TE stimulus→fish = 0.524 bits, where "stimulus" is a conspecific; (b) Sample tank-wide position trajectories for a fish (red) interacting with a replica (blue); for this sample, TE fish→stimulus = 0.357 bits and TE stimulus→fish = 0.638 bits, where "stimulus" is the replica.
Figure 5. Transfer entropy was significantly different between directions when a replica was present. Transfer entropy from the stimulus to the fish was significantly different between conditions. Overhead bars (blue) p < 0.05.
Figure 6. Transfer entropy difference ( TE replica → fish − TE fish → replica ) for a single trial shown in Figure 3b for a range of values of sampling time and number of bins. The sampling time interval and number of bins selected for the analysis is marked with a red cross. 
Information Flow in Animal-Robot Interactions
  • Article
  • Full-text available

January 2014

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239 Reads

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71 Citations

Entropy

The nonverbal transmission of information between social animals is a primary driving force behind their actions and, therefore, an important quantity to measure in animal behavior studies. Despite its key role in social behavior, the flow of information has only been inferred by correlating the actions of individuals with a simplifying assumption of linearity. In this paper, we leverage information-theoretic tools to relax this assumption. To demonstrate the feasibility of our approach, we focus on a robotics-based experimental paradigm, which affords consistent and controllable delivery of visual stimuli to zebrafish. Specifically, we use a robotic arm to maneuver a life-sized replica of a zebrafish in a predetermined trajectory as it interacts with a focal subject in a test tank. We track the fish and the replica through time and use the resulting trajectory data to measure the transfer entropy between the replica and the focal subject, which, in turn, is used to quantify one-directional information flow from the robot to the fish. In agreement with our expectations, we find that the information flow from the replica to the zebrafish is significantly more than the other way around. Notably, such information is specifically related to the response of the fish to the replica, whereby we observe that the information flow is reduced significantly if the motion of the replica is randomly delayed in a surrogate dataset. In addition, comparison with a control experiment, where the replica is replaced by a conspecific, shows that the information flow toward the focal fish is significantly more for a robotic than a live stimulus. These findings support the reliability of using transfer entropy as a measure of information flow, while providing indirect evidence for the efficacy of a robotics-based platform in animal behavioral studies.

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Citations (5)


... The terms F s and T s are the social interaction force and torque in the surge and yaw direction, respectively, and these are determined via considerations similar to those in many previous studies ([ [45][46][47][48][49]. Each swimmer tries to maintain a preferred distance, R o , from its neighbors (Fig. 8), and when the distance between a tracked fish and the focal fish is larger/smaller than R o , the focal fish will accelerate/decelerate in the surge direction and turn toward/away in the rotational direction to chase/avoid the tracked fish. ...

Reference:

Modeling the effect of hydrodynamic wakes in dynamical models of large-scale fish schools
Data-driven modelling of social forces and collective behaviour in zebrafish
  • Citing Article
  • January 2018

Journal of Theoretical Biology

... When tested in a group, a range of caffeine doses (25 mg/L-70 mg/L) increases interindividual distances between treated and untreated fish 14 . A similar range of caffeine doses (25 mg/L-50 mg/L) increases sensitivity to the movement of a robotic stimulus, but does not influence proximity to the stimulus 45 . Chronic exposure to very low concentrations of caffeine (0.0005 mg/L-0.3 ...

Acute caffeine administration affects zebrafish response to a robotic stimulus
  • Citing Article
  • April 2015

Behavioural Brain Research

... Behavioral metrics like time spent in stimulus zone (s), latency to enter stimulus zone (s), mean speed (cm/s), resting time in stimulus zone (s), and zone transition (in number) were measured. The presentation of stimuli in each experimental condition was counterbalanced (Ladu et al., 2015). ...

Live Predators, Robots, and Computer-Animated Images Elicit Differential Avoidance Responses in Zebrafish
  • Citing Article
  • March 2015

Zebrafish

... Butail et al. [94] used zebrafish in an experimental set up with a known information flow and applied TE as a measure of directional information in two systems: (1) fishfish and (2) fish-robot (a life-sized zebrafish replica) interactions. The behaviours in the two systems were 2D-video-recorded by a camera above the tank, and the SE was used to calculate the TE of the interactions between the fish-conspecific and fish-robot. ...

Information Flow in Animal-Robot Interactions

Entropy

... For example, stickleback pairs with an infected individual were slower, less cohesive and more uncoordinated than pairs of uninfected fish [26]. Zebrafish shoals with a single individual exposed to alcohol swam faster and showed an altered leader-follower relationship in comparison to control shoals [27]. Groups may also respond by moving these animals to periphery of the group, expelling them, or maintaining close associations. ...

Sociality Modulates the Effects of Ethanol in Zebra Fish
  • Citing Article
  • May 2014

Alcoholism Clinical and Experimental Research