Evrykleia Sofia Verykaki’s research while affiliated with Universidad Politécnica de Madrid and other places

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Publications (1)


Fig. 2 The lower horizontal workflow shows the export of metadata describing the germplasm bank, and the nature of the data it holds, into a FAIR Data Point. This includes metadata describing any interfaces that might exist that allow exploration of the data itself (Meta A/B/C in the diagram). The upper workflow shows the optional data transformation pipeline that uses CSV as an intermediate representation between the native germplasm database, and the final FAIR data that appears in the Triplestore. Pre-configured and shared YARRRML templates are used to direct the transformation of the CSV into RDF, which is then published in the triplestore. Any interfaces (Service A/B/C) into the data are then pointed at this FAIR representation, rather than the database itself, enabling interoperability between non-coordinating germplasm banks.
The FLAIR-GG federated network of FAIR germplasm data resources
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December 2024

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Scientific Data

Alberto Cámara Ballesteros

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Evrykleia Sofia Verykaki

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A key source of biodiversity preservation is in the ex situ storage of seed in what are known as germplasm banks (GBs). Unfortunately, wild species germplasm bank databases, often maintained by resource-limited botanical gardens, are highly disparate and capture information about their collections in a wide range of underlying data formats, storage platforms, following different standards, and with varying degrees of data accessibility. Thus, it is extremely difficult to build conservation strategies for wild species via integrating data from these GBs. Here, we envisage that the application of the FAIR Principles to wild species and crop wild relatives information, through the creation of a federated network of FAIR GB databases, would greatly facilitate cross-resource discovery and exploration, thus assisting with the design of more efficient conservation strategies for wild species, and bringing more attention to these key data providers.

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