Elizabeth M. Noth’s research while affiliated with University of California, Berkeley and other places

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Publications (63)


Fig. 1. Schematic overview of the workflow.
Fig. 4. Different coexpression patterns in maternal-neonatal pairs between low versus high exposure. (A) the Pearson correlation matrixes for PM 2.5 exposure level (low versus high during the third trimester) show correlations between maternal and neonatal cytokines. Red and blue indicate direct and reverse correlations, respectively. (B) A coexpression differential network was created to compare cytokines that have different coexpression patterns by PM 2.5 exposure levels (low versus high) during the third trimester. the edges in the network indicate that the markers are strongly coexpressed, but the direction of coexpression is opposite in low and high exposure. An asterisk (*) next to the marker name indicates that the marker is from cB. the nodes, which represent the cytokines, were colored according to sample type, with pregnant women in beige and cB in green. the size of the nodes is based on the Bc, which measures the centrality based on shortest paths.
Fig. 5. Impact of PM 2.5 on immune cell type proportion depending on pregnancy status. (A) Single-cell UMAP visualizations of histone acetylation and methylation, colored by cell type identity. (B) Frequency of immune cell subtypes in low and high PM 2.5 exposure groups of pregnant and nonpregnant women. the y axis represents the frequency of cells as a percentage of a total number of 11 immune cells population, and the x axis shows the groups categorized by pregnant and PM 2.5 exposure states: NPl (nonpregnant low), NPh (nonpregnant high), Pl (pregnant low), and Ph (pregnant high). the box plot is colored by pregnant status (red, pregnant; blue, nonpregnant). lines present the changes in cell proportions between low and high exposures within each pregnant status. P values (P) of the interaction term between pregnant status and PM 2.5 exposure are noted above graph.
Impact of air pollution exposure on cytokines and histone modification profiles at single-cell levels during pregnancy
  • Article
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November 2024

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64 Reads

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2 Citations

Science Advances

Youn Soo Jung

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Kari C. Nadeau

Fine particulate matter (PM 2.5 ) exposure can induce immune system pathology via epigenetic modification, affecting pregnancy outcomes. Our study investigated the association between PM 2.5 exposure and immune response, as well as epigenetic changes using high-dimensional epigenetic landscape profiling using cytometry by time-of-flight (EpiTOF) at the single cell. We found statistically significant associations between PM 2.5 exposure and levels of certain cytokines [interleukin-1RA (IL-1RA), IL-8/CXCL8, IL-18, and IL-27)] and histone posttranslational modifications (HPTMs) in immune cells (HPTMs: H3K9ac, H3K23ac, H3K27ac, H2BK120ub, H4K20me1/3, and H3K9me1/2) among pregnant and nonpregnant women. The cord blood of neonates with high maternal PM 2.5 exposure showed lower IL-27 than those with low exposure. Furthermore, PM 2.5 exposure affects the co-modification profiles of cytokines between pregnant women and their neonates, along with HPTMs in each immune cell type between pregnant and nonpregnant women. These modifications in specific histones and cytokines could indicate the toxicological mechanism of PM 2.5 exposure in inflammation, inflammasome pathway, and pregnancy complications.

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Identification of Airborne Particle Types and Sources at a California School Using Electron Microscopy

November 2023

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57 Reads

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1 Citation

We conducted a pilot study to investigate air quality indoors in two classrooms and outdoors on the school grounds in a California community with historically high PM2.5 (fine particulate matter, diameter < 2.5 μm). We used computer-controlled scanning electron microscopy of passive samples to identify major PM types, which were used to help interpret continuous PM2.5 and black carbon sensor data. The five major PM types were sodium salt particles with sulfur, calcium, or chlorine; aluminosilicate dusts; carbonaceous combustion agglomerates; biogenic particles; and metal-rich particles. Based on morphological evidence of water droplets, the salt particles are hypothesized to be secondary aerosols formed via the reaction of sodium chloride fog droplets with sulfur from regional sources. The carbonaceous agglomerates had unusual morphologies consistent with low-temperature combustion and smoke from open-burning activities observed nearby. The passive PM sampler and continuous sensor results indicated lower concentrations in the classroom equipped with an air cleaner. Passive samples collected in one classroom exhibited enhanced PM10–2.5 crustal particles and PM2.5 metal particles, suggesting a potential local PM source in that room. Future study designs that enable longer passive sampling times would reduce detection limits and sample contamination concerns. The determination of major airborne particle types in a given environment makes this technique a useful and unique community exposure assessment tool, even in these limited-duration (48 h) deployments.


Ventilation characteristics of six CDCR facilities, 2020–2021
Ventilation conditions during COVID-19 outbreaks in six California state carceral institutions

November 2023

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59 Reads

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2 Citations

Residents of carceral facilities are exposed to poor ventilation conditions which leads to the spread of communicable diseases such as COVID-19. Indoor ventilation conditions are rarely studied within carceral settings and there remains limited capacity to develop solutions to address the impact of poor ventilation on the health of people who are incarcerated. In this study, we empirically measured ventilation rates within housing units of six adult prisons in the California Department of Corrections and Rehabilitation (CDCR) and compare the measured ventilation rates to recommended standards issued by the World Health Organization (WHO). Findings from the empirical assessment include lower ventilation rates than the recommended ventilation standards with particularly low ventilation during winter months when heating systems were in use. Inadvertent airflows from spaces housing potentially infected individuals to shared common spaces was also observed. The methodology used for this work can be leveraged for routine ventilation monitoring, pandemic preparedness, and disaster response.


PM removal simulation during continuous use of a 10-story elevator for five minutes, during which there are eight coughs and then the elevator empty and stationary with the door closed for five minutes. (a) Scenario 1: express transit between top and bottom floors only. (b) Scenario 2: stops every other floor. y-axis is the concentration of particles per cubic meter inside the elevator, and the x-axis is the time in minutes during normal use (red) and with air cleaner intervention (green). C = discrete cough emission of 75,400 particles [46] in an elevator. Narrow blue regions are when the elevator stops on a floor and the door opens to let out passengers (t=0 to 5 minutes), and large blue regions outlined in red are when the elevator is empty and stationary and the door is closed waiting for passengers (t=5 to 10 minutes). Open-door times for stops on floors were 10 seconds at every floor stop.
PM removal simulation during continuous use of a 10-story elevator for five minutes, during which there are eight coughs and then the elevator empty and stationary with the door closed for five minutes. (a) Scenario 1: express transit between top and bottom floors only. (b) Scenario 2: stops every other floor. y-axis is the concentration of particles per cubic meter inside the elevator, and the x-axis is the time in minutes during normal use (red) and with air cleaner intervention (green). C = discrete cough emission of 75,400 particles [46] in an elevator. Narrow blue regions are when the elevator stops on a floor and the door opens to let out passengers (t=0 to 5 minutes), and large blue regions outlined in red are when the elevator is empty and stationary and the door is closed waiting for passengers (t=5 to 10 minutes). Open-door times for stops on floors were 10 seconds at every floor stop.
Characteristics of elevators sampled in the San Francisco Bay Area.
Elevator Ventilation and SARS-CoV-2-Relevant Particulate Matter Removal in Three Older California Elevators

September 2023

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80 Reads

The objective of this study was to measure particulate matter (PM) total loss rates in three older (1940s, 1960s, and 1980s) elevators in California during two phases and three low-cost intervention modes. Tracer gas decay and <2 μm aerodynamic diameter nontoxic NaCl particles (PM2) were used to calculate PM2 loss rates. The NaCl particles were considered surrogates for smaller particles carrying SARS-CoV-2. Empirical PM2 loss rates were paired with modeled dynamic scenarios to estimate SARS-CoV-2-relevant PM2 removal. Mean loss rates (hr-1) ranged from 1.8 to 184. Compared to a closed-door, stationary elevator, the moving elevators had a fourfold increased mean loss rate (hr-1), while an air cleaner in a stationary elevator increased the mean loss rates sixfold. In a dynamic particle removal simulation of a ten-story elevator, PM was removed 1.38-fold faster with an air cleaner intervention during bottom and top floor stops only (express ride) and 1.12-fold faster with an air cleaner during every other floor stops. The increase in removal rates due to the air cleaner was modest due to the higher moving and open-door removal rates, except during stationary phase. The half-life of PM2 particles in a stationary elevator after all passengers have left can be 8-12 minutes following a single emission and 2-5 minutes with an air cleaner. The low particle removal rate in the stationary elevator requires an intervention so that the particle removal rate will be high to eliminate infectious aerosol. If codes permit, keeping the door open when the elevator is stationary is most effective; otherwise, an air cleaner in a stationary elevator should be used. While an air cleaner is commonly seen as a substantial improvement in reducing potential virus concentration in air, in the moving elevator scenarios, the effect is quite modest. This paper provides empirical particle loss rates inside elevators, the effectiveness of air cleaners in a dynamic elevator space, two approaches to control infectious agents while the elevator is stationary, and support for a precautionary approach towards elevator use amidst a pandemic.


Disparities in job characteristics by race and sex in a Southern aluminum smelting facility

February 2023

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43 Reads

American Journal of Industrial Medicine

Background: Former workers at a Southern aluminum smelting facility raised concerns that the most hazardous jobs were assigned to Black workers, but the role of workplace segregation had not been quantified or examined in the company town. Prior studies discuss race and gender disparities in working conditions, but few have documented them in the aluminum industry. Methods: We obtained workers' company records for 1985-2007 and characterized four job metrics: prestige (sociologic rankings), worker-defined danger (worker assessments), annual wage (1985 dollars), and estimated total particulate matter (TPM) exposure (job exposure matrix). Characteristics of job at hire and trajectories were compared by race and sex using linear binomial models. Results: Non-White males had the highest percentage of workers in low prestige and high danger jobs at hire and up to 20 years after. After 20 years tenure, 100% of White workers were in higher prestige and lower danger jobs. Most female workers, regardless of race, entered and remained in low-wage jobs, while 50% of all male workers maintained their initial higher-wage jobs. Non-White females had the highest prevalence of workers in low-wage jobs at hire and after 20 years-increasing from 63% (95% CI: 59-67) to 100% (95% CI: 78-100). All female workers were less likely to be in high TPM exposure jobs. Non-White males were most likely to be hired into high TPM exposure jobs, and this exposure prevalence increased as time accrued, while staying constant for other race-sex groups. Conclusions: There is evidence of job segregation by race and sex in this cohort of aluminum smelting workers. Documentation of disparities in occupational hazards is important for informing health interventions and research.



Citations (37)


... It appears that active pregnancy modifies the effect of air pollution on the body at a cellular level. In one study PM 2.5 exposure during pregnancy was associated with differential modulation of histone post-translational modifications compared to non-pregnant, age-matched controls [28]. While impacts on maternal health may secondarily affect the fetus, there is additional evidence that the fetus itself is directly affected. ...

Reference:

Climate Change and Congenital Heart Disease: A Narrative Review
Impact of air pollution exposure on cytokines and histone modification profiles at single-cell levels during pregnancy

Science Advances

... Studies on wildfires were largely limited to descriptive designs, though some included comparison groups. Most found a positive association with preterm birth and/or low birthweight, [82][83][84][85][86][87][88] but not pre-eclampsia. 85 One study found a positive association with miscarriage. ...

Pregnancy exposure to PM2.5 from wildland fire smoke and preterm birth in California
  • Citing Article
  • March 2024

Environment International

... At the start of the COVID-19 pandemic, prison populations experienced rates of infection more than five times higher than the general population in the United States 12,13 . The incarcerated population has since experienced sustained SARS-CoV-2 transmission due to dense congregate living and suboptimal ventilation conditions [13][14][15][16] . Characterizing the dynamics of indirect protection can improve understanding of population susceptibility over time and inform public health control measures in these high-risk populations, such as optimizing the timing between additional vaccine doses to slow transmission and informing reactive vaccination efforts during outbreaks. ...

Ventilation conditions during COVID-19 outbreaks in six California state carceral institutions

... Asthma inception and natural evolution follow a complex interplay between the individual genetic background and environmental exposures, such as indoor and outdoor air pollutants, infectious agents, allergens, irritants, occupational factors, diet and lifestyle, currently known as the exposome [1][2][3][4][5][6][7][8][9][10][11][12][13][14]. Several thousands of new chemicals have been introduced in modern life without our full understanding of their toxic health effects and ways to mitigate these effects [10,11,15]. ...

Associations between prenatal and early-life air pollution exposure and lung function in young children: Exploring influential windows of exposure on lung development
  • Citing Article
  • February 2023

Environmental Research

... however, these studies have used varied methods of exposure assessment, age of outcome assessment, and outcome metrics, limiting comparison to the present study. higher levels of personal 48-hour PM 2.5 measurements in the second trimester of pregnancy were significantly associated with lower forced expiratory volume in 1 s (FeV1) and forced vital capacity (FVc) at 4-9 years among a cohort of around 250 children in Poland [6,7]. in a cohort of 222 children from Fresno, ca, an increase of approximately 5 µg/m 3 PM 2.5 was associated with 0.42 l lower FVc (95% ci: −0.81, −0.03) and 0.38 l lower FeV1 (95% ci: −0.74, −0.01), with stronger associations in the second half of pregnancy [45]. among 230 children in a Boston birth cohort, daily PM 2.5 during late pregnancy was weakly associated with impaired lung function at age 7 in boys [9]. in contrast, stapleton et al. [10] did not identify adverse associations between prenatal PM 2.5 exposure and child lung function among approximately 400 children in sabadell, spain, although significant associations were identified for coarse PM (PM 10 ). ...

Associations between Prenatal and Early-Life Air Pollution Exposure and Lung Function in Young Children: Exploring Influential Windows of Exposure on Lung Development
  • Citing Article
  • January 2022

SSRN Electronic Journal

... The mechanisms through which indoor pollutants induce or aggravate asthma are multiple, and include damage to the epithelial barrier, perturbation of the respiratory tract microbiome, immune dysregulation, increased oxidative stress, neurogenic dysfunction and inflammation, and epigenetic and metabolic reprogramming [15,[17][18][19][20][34][35][36][37][38][39][40] (Figure 1). Around 2.4 billion people, especially in low-and middle-income countries, are exposed to dangerous levels of indoor air pollutants. ...

Increases in ambient air pollutants during pregnancy are linked to increases in methylation of IL4, IL10, and IFNγ

Clinical Epigenetics

... Notably, geographic region and socioeconomic status are closely tied to exposures, which themselves are associated with ILD risk and worse outcomes (71). Thus, there is ongoing work to understand the interactions of these environmental factors and social determinants of health and their contributing risk to ILD. ...

Relative environmental and social disadvantage in patients with idiopathic pulmonary fibrosis
  • Citing Article
  • December 2021

Thorax

... The study suggests a connection between the biomarkers assessed and TRAP exposure, indicating that air pollution causes aberrant glucose and lipid metabolism in children, potentially increasing the adult risk of metabolic syndrome. 30 Long-term psychosocial stressors, such as chronic life stress, and gaseous and particle pollution, affect lung function, asthma risk, and inflammatory marker levels in children. Further longitudinal and observational studies should be conducted among schoolchildren to discover the challenges children face from traffic near their schools. ...

Traffic-related air pollution, biomarkers of metabolic dysfunction, oxidative stress, and CC16 in children

Journal of Exposure Science & Environmental Epidemiology

... Hypermethylation and decreased expression of NR2B were related to the perioperative neurocognitive disorder [11]. Meanwhile, it has been reported that CO can elevate the methylation levels of Foxp3, IL4, IL10, and IFNγ in peripheral blood, and is associated with asthma, decreased diastolic blood pressure, and immune cell profile alterations [12][13][14]. Therefore, we hypothesized that CO may induce DNA methylation changes, thereby contributing to the occurrence and development of DEACMP by regulating the expression of relevant genes. ...

Air pollution exposure is linked with methylation of immunoregulatory genes, altered immune cell profiles, and increased blood pressure in children