Dries Bonte’s research while affiliated with Ghent University and other places

Polyploidy, or whole-genome duplication (WGD), both a strong evolutionary and ecological force and a potential pitfall, occurs extensively across the tree of life, particularly in angiosperms. While polyploid organisms are prevalent, ancient polyploidy (paleopolyploidy) is decisively rare. Numerous studies have revealed adaptive changes at the genomic, cellular, and physiological levels that confer evolutionary advantages to polyploids, but the factors contributing to their long-term success remain poorly understood. Here, we assembled a large angiosperm genome dataset encompassing 470 different angiosperm species. We reconstructed a highly concordant evolutionary timescale of angiosperms and conducted a large-scale study to identify and date WGDs across this set of species. We unveiled 132 independent ancient WGD events that do not seem randomly distributed in time, but clustered around periods of great environmental upheaval. We observed that a majority of paleopolyploidizations occurred between 50 and 75 mya, coinciding with the Paleocene-Eocene Thermal Maximum and the Cretaceous-Paleogene (K-Pg) boundary. A more recent wave of ancient WGDs can be observed between 25 and 40 mya, coinciding with periods of glaciation expansion, rapid shifts in sea surface temperatures, and a marked decrease in global mean surface temperature. Integrating different lines of evidence, we argue that polyploids have an increased chance of survival during times of great environmental turmoil.

The integration of coastal dunes planted with vegetation and dikes combines traditional infrastructure with dynamic aeolian sediment and ecological processes to enhance coastal resilience. The functioning of such dune-dike hybrid Nature-based Solution strongly depends on aeolian sediment transport and the vertical growth rate of vegetation. We used the AeoLiS numerical model to investigate the relative importance of aeolian and vegetation dynamics in the evolution of a 120 m long and 20 m wide marram grass-planted dune field on a Belgian sandy beach backed by a seawall, constructed in 2021. AeoLiS proved to be a promising tool for predicting these systems, effectively capturing aeolian sediment deposition, vegetation growth, and profile development three years post-construction. Seasonal variations in vegetation trapping efficiency, driven by sediment burial, and seasonal plant growth emerged as important factors controlling dune growth. Profile development discrepancies were attributed to unaccounted biotic and abiotic factors, highlighting the complexity of coastal eco-geomorphological processes. Dunes planted with vegetation wider than 20 m were identified to enhance sediment trapping without an increase in dune height. These findings offer actionable insights for coastal management, promoting strategic dune design and planting approaches to reinforce shoreline resilience. Additionally, the findings underscore the necessity for advancing eco-morphodynamic models and deepening our knowledge of coastal dune dynamics.

Premise Whole‐genome duplication (WGD, polyploidization) has been identified as a driver of genetic and phenotypic novelty, having pervasive consequences for the evolution of lineages. While polyploids are widespread, especially among plants, the long‐term establishment of polyploids is exceedingly rare. Genome doubling commonly results in increased cell sizes and metabolic expenses, which may be sufficient to modulate polyploid establishment in environments where their diploid ancestors thrive. Methods We developed a mechanistic simulation model of photosynthetic individuals to test whether changes in size and metabolic efficiency allow autopolyploids to coexist with, or even invade, ancestral diploid populations. Central to the model is metabolic efficiency, which determines how energy obtained from size‐dependent photosynthetic production is allocated to basal metabolism as opposed to somatic and reproductive growth. We expected neopolyploids to establish successfully if they have equal or higher metabolic efficiency as diploids or to adapt their life history to offset metabolic inefficiency. Results Polyploid invasion was observed across a wide range of metabolic efficiency differences between polyploids and diploids. Polyploids became established in diploid populations even when they had a lower metabolic efficiency, which was facilitated by recurrent formation. Competition for nutrients is a major driver of population dynamics in this model. Perenniality did not qualitatively affect the relative metabolic efficiency from which tetraploids tended to establish. Conclusions Feedback between size‐dependent metabolism and energy allocation generated size and age differences between plants with different ploidies. We demonstrated that even small changes in metabolic efficiency are sufficient for the establishment of polyploids.

Arthropod movement has been noticeably understudied compared to vertebrates. A crucial knowledge gap pertains to the factors influencing arthropod movement at habitat boundaries, which has direct implications for population dynamics and gene flow. While larger arthropod species generally achieve greater dispersal distances and large‐scale movements are affected by weather conditions, the applicability of these relationships at a local scale remains uncertain. Existing studies on this subject are not only scarce but often limited to a few species or laboratory conditions. To address this knowledge gap, we conducted a field study in two nature reserves in Belgium, focusing on both flying and cursorial (non‐flying) arthropods. Over 200 different arthropod species were captured and released within a circular setup placed in a resource‐poor environment, allowing quantification of movement speed and direction. By analysing the relationship between these movement variables and morphological (body size) as well as environmental factors (temperature and wind), we aimed to gain insights into the mechanisms driving arthropod movement at natural habitat boundaries. For flying species, movement speed was positively correlated with both body size and tailwind speed. In contrast, movement speed of cursorial individuals was solely positively related with temperature. Notably, movement direction was biased towards the vegetated areas where the arthropods were originally caught, suggesting an internal drive to move towards suitable habitat. This tendency was particularly strong in larger flying individuals and under tailwind conditions. Furthermore, both flying and cursorial taxa were hindered from moving towards the habitat by strong upwind. In conclusion, movement speed and direction at patch boundaries are dependent on body size and prevailing weather conditions, and reflect an active decision‐making process.

The organisation of species diversity is affected by environmental factors acting at different spatial scales. To understand the drivers behind the community structure of invertebrates associated with Marram grass-the dominant dune building ecological engineers from coastal dunes-, we setup a stratified sampling scheme into six biogeographic regions along the North Sea. By sampling plant tussocks that are differently spatially organised, we tested to which degree local species composition is affected by the plant spatial organisation. We used a joint species distribution approach to understand how species traits and their phylogeny steer the species community composition. We show biogeography to be the most important driver, followed by species-specific responses to marram grass cover and vitality. Traits or phylogeny had a minor impact on the species distribution patterns. The residual species covariation suggests negative interactions between groups of specialist and generalist species. From an applied perspective, our research indicates that the biological value of Nature-based Solutions that build on the restoration and design of coastal dunes can be steered by the design of a heterogeneous marram grass planting scheme and/or development.

Dispersal is a well-recognized driver of ecological and evolutionary dynamics, and simultaneously an evolving trait. Dispersal evolution has traditionally been studied in single-species metapopulations so that it remains unclear how dispersal evolves in metacommunities and metafoodwebs, which are characterized by a multitude of species interactions. Since most natural systems are both species-rich and spatially structured, this knowledge gap should be bridged. Here, we discuss whether knowledge from dispersal evolutionary ecology established in single-species systems holds in metacommunities and metafoodwebs and we highlight generally valid and fundamental principles. Most biotic interactions form the backdrop to the ecological theatre for the evolutionary dispersal play because interactions mediate patterns of fitness expectations across space and time. While this allows for a simple transposition of certain known principles to a multispecies context, other drivers may require more complex transpositions, or might not be transferred. We discuss an important quantitative modulator of dispersal evolution—increased trait dimensionality of biodiverse meta-systems—and an additional driver: co-dispersal. We speculate that scale and selection pressure mismatches owing to co-dispersal, together with increased trait dimensionality, may lead to a slower and more ‘diffuse’ evolution in biodiverse meta-systems. Open questions and potential consequences in both ecological and evolutionary terms call for more investigation. This article is part of the theme issue 'Diversity-dependence of dispersal: interspecific interactions determine spatial dynamics'.

Context-dependent dispersal allows organisms to seek and settle in habitats improving their fitness. Despite the importance of species interactions in determining fitness, a quantitative synthesis of how they affect dispersal is lacking. We present a meta-analysis asking (i) whether the interaction experienced and/or perceived by a focal species (detrimental interaction with predators, competitors, parasites or beneficial interaction with resources, hosts, mutualists) affects its dispersal; and (ii) how the species' ecological and biological background affects the direction and strength of this interaction-dependent dispersal. After a systematic search focusing on actively dispersing species, we extracted 397 effect sizes from 118 empirical studies encompassing 221 species pairs; arthropods were best represented, followed by vertebrates, protists and others. Detrimental species interactions increased the focal species’ dispersal (adjusted effect: 0.33 [0.06, 0.60]), while beneficial interactions decreased it (−0.55 [−0.92, −0.17]). The effect depended on the dispersal phase, with detrimental interactors having opposite impacts on emigration and transience. Interaction-dependent dispersal was negatively related to species’ interaction strength, and depended on the global community composition, with cues of presence having stronger effects than the presence of the interactor and the ecological complexity of the community. Our work demonstrates the importance of interspecific interactions on dispersal plasticity, with consequences for metacommunity dynamics. This article is part of the theme issue ‘Diversity-dependence of dispersal: interspecific interactions determine spatial dynamics’.

Dispersal plays a pivotal role in the eco-evolutionary dynamics of spatially structured populations, communities and ecosystems. As an individual-based trait, dispersal is subject to both plasticity and evolution. Its dependence on conditions and context is well understood within single-species metapopulations. However, species do not exist in isolation; they interact locally through various horizontal and vertical interactions. While the significance of species interactions is recognized for species coexistence and food web functioning, our understanding of their influence on regional dynamics, such as their impact on spatial dynamics in metacommunities and meta-food webs, remains limited. Building upon insights from behavioural and community ecology, we aim to elucidate biodiversity as both a driver and an outcome of connectivity. By synthesizing conceptual, theoretical and empirical contributions from global experts in the field, we seek to explore how a more mechanistic understanding of diversity–dispersal relationships influences the distribution of species in spatially and temporally changing environments. Our findings highlight the importance of explicitly considering interspecific interactions as drivers of dispersal, thus reshaping our understanding of fundamental dynamics including species coexistence and the emergent dynamics of metacommunities and meta-ecosystems. We envision that this initiative will pave the way for advanced forecasting approaches to understanding biodiversity dynamics under the pressures of global change. This article is part of the theme issue ‘Diversity-dependence of dispersal: interspecific interactions determine spatial dynamics’.

Throughout succession, communities undergo structural shifts, which can alter the relative abundances of species and how they interact. It is frequently asserted that these alterations beget stability, i.e. that succession selects for communities better able to resist perturbations. Yet, whether and how alterations of network structure affect stability during succession in complex communities is rarely studied in natural ecosystems. Here, we explore how network attributes influence stability of different successional stages of a natural network: symbiotic arthropod communities forming food webs inside red wood ant nests. We determined the abundance of 16 functional groups within the symbiont community across 51 host nests in the beginning and end stages of succession. Nest age was the main driver of the compositional shifts: symbiont communities in old nests contained more even species abundance distributions and a greater proportion of specialists. Based on the abundance data, we reconstructed interaction matrices and food webs of the symbiont community for each nest. We showed that the enhanced community evenness in old nests leads to an augmented food web stability in all but the largest symbiont communities. Overall, this study demonstrates that succession begets stability in a natural ecological network by making the community more even.