Denise J. Roe’s research while affiliated with University of Arizona and other places

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Publications (361)


Table 4
Sample characteristics of incident endometrial cancer cases in the Women's Health Initiative (N = 1,661)
Epidemiological Analysis of Obesity-related co-morbidities and mortality among post- menopausal women diagnosed with endometrial cancer: A Randomized Controlled Trial.
  • Preprint
  • File available

March 2025

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10 Reads

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Karen Basen-Engquist

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Rogelio Robles-Morales

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Objective Obesity is a risk factor for endometrial cancer (EC). Five-year survival is over 80%; however, mortality rates have increased in recent years. Post-menopausal women with EC frequently present with obesity-related comorbidities or develop comorbidities after diagnosis. Survival may vary related to this comorbidity burden. This analysis describes modifiable comorbidities (diabetes, cardiovascular disease, hypertension, and fractures) among post-menopausal EC survivors and evaluates the relationship between obesity-related comorbidities and mortality after an endometrial cancer diagnosis. Methods Epidemiological analysis of overall mortality in relation to incidence of obesity-related comorbidity (obesity, diabetes, cardiovascular disease, hypertension and fractures) after EC diagnosis. The participants are Post-menopausal women from 40 clinical sites across the U.S. participating in the Women’s Health Initiative (WHI) observational or clinical trials and diagnosed with incident EC during follow-up. Adjusted Cox proportional hazards regression models for incident EC were used to evaluate the relationship between comorbidities and all-cause mortality. Results 1661 incident cases of EC were identified. Mortality rates were 55.5% for women with EC. Prevalence increased from baseline to 18 y follow-up for each comorbidity. Regression analyses for incident EC indicated that severe obesity HR (95% CI): 2.13 (1.52, 2.97), cardiovascular disease, 1.50 (1.26, 1.78), and fracture, 1.17 (1.07, 1.27) were associated with greater overall mortality. Conclusions Obesity-associated comorbidities are common and are associated with greater mortality in post-menopausal women diagnosed with endometrial cancer. Interventions to modify risk for comorbidity in EC survivors may improve survival and should be evaluated. Clinical Trial Registration: NCT 00000611

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Figure 1. MCPyV-perturbed cell model reveals signaling pathways altered during MCC development. IMR90 normal human fibroblasts expressing inducible MCPyV early region (ER) were subjected to bulk RNAsequencing. (A) Principal component analysis (PCA) performed on all 13870 expressed genes in the time series RNA-seq data. (B) The eigengenes of the 14 WGCNA modules were projected onto each time point and the modules were grouped by their dynamic patterns using hierarchical clustering. (C) Force-directed network of hub genes in the 14 WGCNA modules. The attraction forces between nodes were defined by the topological overlap matrix and were inversely proportional to the length of edges in the graph. (D) GO term enrichment analysis of each WGCNA gene module. The terms are ranked by adjusted p-value, and the top-ranked terms are shown. Neuroendocrine related terms are highlighted in red, Wnt signaling related terms are highlighted in blue.
Figure 2. Identifying areas of active gene regulation in IMR90 cells expressing MCPyV T antigens. (A) Graphic workflow of regulatory network analysis. RNA-seq data was integrated with TF motif binding prior and TF protein-protein interactions to infer sample-specific regulatory networks using PANDA and LIONESS. IMR90-ER networks were grouped into five time periods and compared with IMR90-GFP networks from the same time period using ALPACA, to identify differential modules. (B) Sankey plot shows the dynamics of differential network communities detected by the workflow shown in panel A. Each vertical bar represents a differential community, with the size of the bar proportional to the number of genes in the community. Ribbons between adjacent bars represent the number of overlapping genes. Word cloud in the same color as the gene module annotates the enriched biological functions of genes inside the module (font size reflects the Padj value).
Figure 3. MCPyV-ER induces characteristic changes in Wnt expression resembling the Wnt profile in MCC tumors. (A) Bubble plot showing GO term enrichment results for DEGs between MCC tumor samples and normal skin samples (Padj ≤0.05 and |log2 fold change| ≥ 1). The Wnt signaling pathway ranked as one of the most significantly enriched pathways. (B) Log2 fold change of selected Wnt gene expression levels in IMR90-ER samples, relative to the IMR90-GFP samples at the corresponding time points. The genes were categorized into two sets based on their expression dynamics. (C) Heatmap of Wnt signaling pathway genes in MCC tumor samples and normal skin samples. Two distinct trends in Wnt genes expression were observed, with several genes, including FZD7, WNT16, TCF3, and TCF7, showing trends consistent with those observed in our IMR90 model.
Figure 7. Antitumor activity of pyrvinium in an MKL-1 xenograft tumor model. (A) Experimental design of the in vivo study. (B) Tumor growth curve showing the mean tumor volume of vehicle control and pyrvinium treated mice from day 0 to day 20 of treatment (means ± SEM, n = 7). (C) H&E and IHC staining results on serial sectioning slides for each marker in the same lesion. Tumor tissues were collected 0.5 to 1 hour after the final 1 mg/kg dose of pyrvinium in in vivo Study #2 (experimental design shown in Supplemental Figure 14C). (D) Percentage of MKL-1 xenograft tumor tissue expressing ATOH1 or Ki67 in vehicle control group and pyrviniumtreated group.
Integrative analysis reveals therapeutic potential of pyrvinium pamoate in Merkel cell carcinoma

February 2025

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18 Reads

The Journal of clinical investigation

Merkel Cell Carcinoma (MCC) is an aggressive neuroendocrine cutaneous malignancy arising from either ultraviolet-induced mutagenesis or Merkel cell polyomavirus (MCPyV) integration. Despite extensive research, our understanding of the molecular mechanisms driving the transition from normal cells to MCC remains limited. To address this knowledge gap, we assessed the impact of inducible MCPyV T antigens on normal human fibroblasts by performing RNA sequencing. Our data uncovered changes in expression and regulation of Wnt signaling pathway members. Building on this observation, we bioinformatically evaluated various Wnt pathway perturbagens for their ability to reverse the MCC gene expression signature and identified pyrvinium pamoate, an FDA-approved anthelminthic drug known for its anti-tumor activity in other cancers. Leveraging transcriptomic, network, and molecular analyses, we found that pyrvinium targets multiple MCC vulnerabilities. Pyrvinium not only reverses the neuroendocrine features of MCC by modulating canonical and non-canonical Wnt signaling but also inhibits cancer cell growth by activating p53-mediated apoptosis, disrupting mitochondrial function, and inducing endoplasmic reticulum stress. Finally, we demonstrated that pyrvinium reduces tumor growth in an MCC mouse xenograft model. These findings offer a new understanding of the role of Wnt signaling in MCC and highlight the utility of pyrvinium as a potential treatment for MCC.



Infertility and Risk of Ovarian Cancer in the Women’s Health Initiative

Cancer Causes & Control

Purpose There is a consistent relationship with greater ovulation frequency and increased risk of ovarian cancer. However, prior research on infertility, which may be associated with ovulation frequency through multiple mechanisms, and ovarian cancer has yielded conflicting results, possibly due to prior research conflating fertility treatment with infertility and restricting follow-up to premenopausal cases. Our objective was to determine the association between infertility and risk of postmenopausal ovarian cancer, overall and by histotype, in a population that had not received treatment with IVF. Methods We utilized data from the Women’s Health Initiative (n = 112,925 postmenopausal participants) with over 25 years of follow-up. At baseline, participants were asked whether they had ever tried to become pregnant for more than one year without becoming pregnant and whether a reason was found. Cox proportional hazards models were used to calculate hazard ratios (HRs) of incident adjudicated ovarian cancer comparing participants with a history of infertility to fertile participants overall and by histotype. Results 17% of participants reported a history of infertility at baseline and 1,109 ovarian cancer cases were diagnosed during follow-up. No statistically significant association was observed between infertility and risk of any ovarian cancer (HR: 1.09, 95% CI 0.92–1.29), but those reporting infertility had a 90% higher risk of endometrioid and clear cell ovarian cancers (HR: 1.90 95% CI 1.09–3.34) compared to fertile participants. The reported reason(s) for infertility had no discernable impact on these associations. Conclusions Infertility may be associated with clear cell and endometrioid ovarian cancer but not other ovarian tumor histotypes.


Figure 1. CONSORT diagram of postmenopausal women in the Women's Health Initiative (WHI) included in the analyses of first incidence of breast cancer related to body composition. a Cancer includes all types of cancer reported in WHI except nonmelanoma skin cancer. Abbreviation: DXA ¼ dualenergy X-ray absorptiometry.
Abdominal visceral and subcutaneous adipose tissue associations with postmenopausal breast cancer incidence

January 2025

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37 Reads

JNCI Cancer Spectrum

Background Obesity, classified by body mass index (BMI), is associated with higher postmenopausal breast cancer (BCa) risk. Yet, the associations between abdominal visceral (VAT) and subcutaneous adipose tissue (SAT) with BCa are unclear. Methods We assessed BCa associations with abdominal VAT and SAT in a prospective cohort of postmenopausal women without a history of cancer and with 27 years follow-up (N = 9950), during which all new cancers were adjudicated. Dual-energy X-ray absorptiometry scans assessed adiposity at baseline, year 3, and year 6. Competing risks multivariable sub-hazard ratios (SHR), with adjustments for sociodemographic, behavioral, reproductive, and anthropometric characteristics, were estimated for baseline and time-dependent associations between VAT, SAT, and incident BCa. Results Participants averaged 63.3 ± 7.4 years of age and a BMI of 28.20 ± 5.72 kg/m2 at baseline. The models included 738 incident BCa cases (N = 593 invasive; N = 145 in situ). Baseline VAT and SAT area were associated with significantly increased BCa risk, by 36% and 19% respectively. Increasing VAT/SAT ratio was associated with an 8% increase in incident BCa. Time-dependent models produced similar results. VAT and VAT/SAT associated BCa risk was highest for African American/Black women, though not significantly different from other groups. Quartiles (Q) of VAT/SAT were also explored; the SHR for Q4 compared to Q1 was 1.49 (95% CI: 1.18, 1.87). Conclusion Higher abdominal VAT and SAT are associated with an increased risk of postmenopausal BCa, and VAT/SAT may provide a distinctive risk estimate. Potential racial and ethnic differences require replication in a larger sample.(NCT00000611)


Figure 1. CONSORT diagram
Characteristics of patients at baseline.
Pembrolizumab ± paricalcitol in metastatic pancreatic cancer postmaximal cytoreduction

January 2025

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12 Reads

The Oncologist

Lessons learned Intravenous paricalcitol did not improve the efficacy of pembrolizumab, likely related to the short half-life. Background Immunotherapy has limited benefit in the treatment of advanced pancreatic cancer with the tumor microenvironment playing a key role in immune resistance. In preclinical studies, vitamin D receptor (VDR) agonists have been shown to sensitize pancreatic tumors to PD-1 blockade. Methods This was a randomized, double-blinded, placebo-controlled, phase II trial to evaluate pembrolizumab with or without paricalcitol as maintenance therapy for patients with metastatic pancreatic ductal adenocarcinoma (PDAC). Participants were ≥18 years; histologically or cytologically confirmed metastatic PDAC showing no disease progression after frontline systemic therapy, and achieving maximal cytoreduction (eg, with no further antitumor effect), Eastern Cooperative Oncology Group (ECOG) status of 0 or 1; adequate organ function. Study treatment included: pembrolizumab 200 mg IV every 3 weeks and either paricalcitol 25 mcg IV 3 times per week or placebo. The primary objective was to evaluate 6-month progression free survival (PFS). Secondary objectives include evaluating the toxicity of the combination and overall survival (OS). Results There was no significant difference in 6-month PFS, median PFS, median OS, nor treatment-related AEs between the 2 arms. Conclusions and relevance Paricalcitol did not improve the efficacy of pembrolizumab likely related to its short half-life of only 5-7 hours. Microbiome analysis revealed significant difference between long-term (>12 weeks) and short-term (<12 weeks) survival groups across treatment arms. Modulation of the tumor microenvironment will likely require more sustained VDR activity. Trial Registration Clinicaltrials.gov, ID: NCT03331562.



Cervicovaginal lavages uncover growth factors as key biomarkers for early diagnosis and prognosis of endometrial cancer

November 2024

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34 Reads

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3 Citations

Molecular Biomedicine

Endometrial cancer (EC) rates are continuing to rise and it remains the most common gynecologic cancer in the US. Existing diagnostic methods are invasive and can cause pain and anxiety. Hence, there is a need for less invasive diagnostics for early EC detection. The study objective was to evaluate the utility of growth factors collected through minimally invasive cervicovaginal lavage (CVL) sampling as diagnostic and prognostic biomarkers for EC. CVL samples from 192 individuals undergoing hysterectomy for benign or malignant conditions were collected and used to quantify the concentrations of 19 growth and angiogenic factors using multiplex immunoassays. Patients were categorized based on disease groups: benign conditions ( n = 108), endometrial hyperplasia ( n = 18), and EC ( n = 66). EC group was stratified into grade 1/2 endometrial endometrioid cancer ( n = 53) and other EC subtypes ( n = 13). Statistical associations were assessed using receiver operating characteristics, Spearman correlations and hierarchical clustering. Growth and angiogenic factors: angiopoietin-2, endoglin, fibroblast activation protein (FAP), melanoma inhibitory activity, and vascular endothelial growth factor-A (VEGF-A) were significantly ( p < 0.0001) elevated in EC patients. A multivariate model combining 11 proteins with patient age and body mass index exhibited excellent discriminatory potential (area under curve = 0.918) for EC, with a specificity of 90.7% and a sensitivity of 87.8%. Moreover, angiopoietin-2, FAP and VEGF-A significantly ( p < 0.05–0.001) associated with tumor grade, size, myometrial invasion, and mismatch repair status. Our results highlight the innovative use of growth and angiogenic factors collected through CVL sampling for the detecting endometrial cancer, showcasing not only their diagnostic potential but also their prognostic value.


History of Infertility and Risk of Endometrial Cancer in the Women’s Health Initiative

September 2024

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24 Reads

Cancer Epidemiology, Biomarkers & Prevention

Background Several studies have suggested an association between infertility and risk of endometrial cancer. However, most studies have evaluated this relationship in premenopausal people, yet the mean age of endometrial cancer is 60 years, after the average age of menopause. Methods Our study included Women’s Health Initiative participants who self-reported whether they had a history of infertility. Cox proportional hazards models were used to examine the association between infertility and incident endometrial cancer. Given that all infertility diagnoses occurred prior to study enrollment, we conducted secondary analyses using logistic regression examining prevalent endometrial cancer cases diagnosed before study baseline. Results Approximately 18% of participants reported a history of infertility. No statistically significant association was observed between infertility and risk of incident endometrial cancer overall [incident cases = 1,622; HR = 1.12; 95% confidence interval (CI) = 0.99–1.26]. Although point estimates suggested an increase in risk of endometrial cancer among women with body mass index (BMI) ≥25 (HR = 1.15; 95% CI = 0.99–1.33), none of the associations were statistically significant. There was an association between history of infertility and prevalent endometrial cancer cases (OR = 1.19; 95% CI = 1.06–1.34), with the strongest association for infertility diagnosis due to endometriosis (OR 2.42; 95% CI = 1.83–3.19). Conclusions In a population of postmenopausal participants, we observed a modest, but not statistically significant, association between overall infertility and incident endometrial cancer, with the suggestion of a higher risk among those with a BMI ≥ 25. Impact Our findings highlight, as observed in previous studies, that risk factors for endometrial cancer may vary by BMI.


High Mechanical Conditioning by Tumor Extracellular Matrix Stiffness Is a Predictive Biomarker for Antifibrotic Therapy in HER2-Negative Breast Cancer

September 2024

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28 Reads

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3 Citations

Clinical Cancer Research

Purpose Tumor progression has been linked to stiffening of the extracellular matrix caused by fibrosis. Cancer cells can be mechanically conditioned by stiff extracellular matrix, exhibiting a 1,004-gene signature [mechanical conditioning (MeCo) score]. Nintedanib has demonstrated antifibrotic activity in idiopathic pulmonary fibrosis. This study explores nintedanib’s antifibrotic effect on breast cancer outcomes. Experimental Design We present long-term follow-up and analysis of a neoadjuvant randomized phase II trial in early HER2-negative breast cancer. Patients (N = 130) underwent a baseline biopsy and received 12 paclitaxel courses alone (control arm) or in combination with nintedanib (experimental arm). The tumor MeCo score was determined by RNA sequencing. The primary aim was to assess nintedanib’s impact on event-free survival based on MeCo scores. Results Follow-up data were retrieved from 111 patients; 75 baseline and 24 post-run-in phase samples were sequenced. After median follow-up of 9.67 years, median event-free survival was not statistically different between arms (P = 0.37). However, in the control arm, high- versus low-MeCo patients had a statistically higher relapse risk: HR = 0.21; P = 0.0075. This risk was corrected by nintedanib in the experimental arm: HR = 0.37; P = 0.16. Nintedanib demonstrated pharmacodynamic engagement, reducing the MeCo score by 25% during the run-in phase (P < 0.01). Patients with low MeCo after run-in had the best long-term prognosis (HR = 0.087; P = 0.03). Conclusions High MeCo is predictive of poor outcomes in HER2-negative early breast cancer, although this risk can be mitigated by nintedanib, which is able to specifically reduce MeCo.


Citations (49)


... Из всех проанализированных белков в цервикальновагинальных смывах [14] отметили VEGF-A, как единственный, значительно коррелировавший со всеми неблагоприятными характеристиками опухоли, которые оценивали: размер опухоли, степень злокачественности, инвазия в миометрий и статус микросателлитной нестабильности -MMR. Авторы также показали, что уровень VEGF-A значительно выше в опухолях EC с MMRd по сравнению с опухолями EC с MMRp. ...

Reference:

Specifics of VEGF-A, VEGF-C and their receptors levels in the tumor and blood of patients with endometrial cancer depending on the histological type
Cervicovaginal lavages uncover growth factors as key biomarkers for early diagnosis and prognosis of endometrial cancer

Molecular Biomedicine

... Furthermore, high expression of structural ECM genes may be associated with desmoplasia and ECM remodelling, an adverse prognosis factor in several cancer types (Piersma et al., 2020;Quintela-Fandino et al., 2024;Wang et al., 2021). Similarly, we found high FN1, COL5A2, and COL1A1 expression associated with a poor prognosis in MIBC. ...

High Mechanical Conditioning by Tumor Extracellular Matrix Stiffness Is a Predictive Biomarker for Antifibrotic Therapy in HER2-Negative Breast Cancer
  • Citing Article
  • September 2024

Clinical Cancer Research

... Proposed methods include metabolomic and proteomic profiling of cervicovaginal fluid to identify ECspecific biomarkers. Untargeted metabolomics were used on cervicovaginal lavage samples, analyzing 920 metabolites in patients with EC [59]. Certain lipids, amino acids, and energy metabolism-related metabolites were elevated in EC patients. ...

Cervicovaginal Metabolome and Tumor Characteristics for Endometrial Cancer Detection and Risk Stratification

Clinical Cancer Research

... The study found a slightly increased risk of breast cancer with certain stimulation protocols but emphasized that the overall risk remains low. The authors highlighted the importance of individualized treatment plans and ongoing research to address these concerns [26]. In the largest meta-analysis in the past 20 years on the incidence of breast cancer associated with fertility treatment, analyzing 25 studies, including 617,479 participants, there was no significant association demonstrated between fertility treatments and excess breast-cancer risk [27]. ...

Infertility and risk of postmenopausal breast cancer in the women’s health initiative

Breast Cancer Research and Treatment

... DNA methylation analysis of cell-free DNA in pleural fluid has proven effective in distinguishing MPEs from benign ones. BIXBY et al. [104] have shown that such AI-enhanced analysis can achieve AUC of 0.918, demonstrating high accuracy in detecting malignancy. ...

Cell-free DNA methylation analysis as a marker of malignancy in pleural fluid

... Recent studies have highlighted the use of solar UV (SUV) radiation to mimic the pathogenies of human cSCC in murine models [63,64]. UV radiation has been linked to increased transcription of PD-L1, leading to immunosuppression (Figure 2) [65]. ...

Inhibition of UV-Induced Stress Signaling and Inflammatory Responses in SKH-1 Mouse Skin by Topical Small Molecule PD-L1 Blockade

JID Innovations

... Diagnosis of Merkel cell carcinoma typically involves live tissue analysis, encompassing biopsy and histopathological examination. Globally, the incidence of Merkel cell carcinoma is relatively low, predominantly affecting elderly individuals, notably Caucasians aged over 50 years, with the risk escalating with advancing age [3,4]. ...

Integrative analysis reveals therapeutic potential of pyrvinium pamoate in Merkel cell carcinoma

... 12,37 In recent years, the quality of life of patients undergoing surgical or other oncological treatments for various types of cancer has become a central topic of cancer care. 14,38,39 Data from previous studies have shown that electrochemotherapy can be used as a modern therapeutic tool for patients who would otherwise have to undergo surgery involving mutilation of the external genitalia. 13 Electrochemotherapy also appears to be less mutilating and could be a promising alternative treatment for vulvar cancer recurrence, especially in cases where the clitoris, vagina, urethra and anus are in close proximity. ...

Preoperative quality of life (QOL) at time of gynecologic surgery: considerations for postoperative management

AJOG Global Reports

... В случае ВПКЛ результаты лечения попрежнему неудовлетво рительны [7]. Так, в ретроспективном исследовании терапии на основе современных препаратов медиана ОВ при ППКЛ составила 36,6 мес в сравнении с 3,2 мес у пациентов с ВПКЛ [8]. Среди факторов, оказыва ющих отрицательное влияние на ОВ, выделяют повы шение уровня креатинина, лактатдегидрогеназы, каль ция и β2микроглобулина [9]. ...

Plasma cell leukemia: A multicenter retrospective study of 150 patients.
  • Citing Article
  • June 2023

Journal of Clinical Oncology

... However, 3 reports were subsequently excluded due to publication-type issues. Ultimately, 7 [14][15][16][17][18][19][20] studies were included in the review (Figure 1). ...

Cost-effectiveness analysis of later-line therapies for metastatic colorectal cancer (mCRC) based on a novel methodology of network meta-analysis (NMA) of survival curves.
  • Citing Article
  • June 2023

Journal of Clinical Oncology