David W. Lupton’s research while affiliated with Monash University (Australia) and other places

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Publications (142)


Phosphine mediated (3 + 2) cycloaddition of electron-poor terminal alkynes: a concise route to pre-methylenomycin C lactone.
  • Preprint

May 2025

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1 Read

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1 Citation

Alexander Wright

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Chenxi Zhang

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Jing Cao

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[...]

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David Lupton

Herein, we report a (3 + 2) cycloaddition to deliver an array of cyclopentenes. Typically, the reaction involves electron-poor terminal alkynes and ketomalonate partners, however numerous structural modifications to the coupling partners have been accommodated to enable 45 examples of the reaction to be completed. Mechanistic studies highlight the role of alkyne slow addition to avoid undesired alkyne deprotonation. Application to the synthesis of pre-methylenomycin C lactone, an inter-mediate in methylenomycin biosynthesis with potent activity against Gram-positive bacteria, demonstrates the robust nature and good scalability of the reaction.



Enantioselective Synthesis of Cyclopentenes by (3+2) Annulation via a 2‐Carbon Phosphonium

July 2024

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13 Reads

Angewandte Chemie

Herein we report a catalytic enantioselective (3+2) annulation, in which a vinyl phosphonium intermediate serves as the 2‐carbon component. The reaction involves an α‐umpolung β‐umpolung coupling sequence, enabled by β‐haloacrylates and chiral enantioenriched phosphepine catalysts. The reaction shows good generality, providing access to an array of cyclopentenes, with mechanistic studies supporting stereospecific formation of the vinyl phosphonium intermediate which, then undergoes annulation with turn over limiting catalyst elimination. Beyond defining a new approach to cyclopentenes, these studies demonstrate that β‐haloacrylates can replace ynoates in reaction designs that require exclusive umpolung coupling at the α‐ and β‐positions.


Enantioselective synthesis of cyclopentenes by (2 + 3) cycloaddition via a 2-carbon phosphonium

June 2024

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3 Reads

Herein we report a catalytic enantioselective (2 + 3) cycloaddition in which a vinyl phosphonium intermediate serves as the 2-carbon component. The reaction involves an umpolung umpolung coupling sequence enabled by haloacrylates and chiral enantioenriched phosphepine catalysts. The reaction shows good generality providing access to an array of cyclopentenes, with mechanistic studies supporting stereospecific formation of the vinyl phosphonium intermediate which then undergoes annulation with turn over limiting catalyst elimination. Beyond defining a new approach to cyclopentenes these studies demonstrate that haloacrylates can replace ynoates in reaction designs that require exclusive umpolung coupling at both carbons


A) Phosphine catalyzed annulations with allenoates. B) Proposed and previous studies on (n+2) annulation via phosphonium 4. C) Summary of reaction reported herein.
A) Phosphine catalyzed (3+2) annulation with ynoates and surrogates. B) Rationale behind ynoate surrogacy strategy. C) Selected optimization for the enantioselective synthesis of cyclopentene 11 a.
Scope of enantioselective (3+2) annulation. A) Variation of EWG¹ in 9. B) Variation of EWG³ and EWG⁴ in 10. C) Variation of EWG² in 10.
Derivatizations studies with cyclopentenes 11 i and 11 a.
A) β‐coupling is via iodide 9 a. B) Annulation of deuterated substrate D‐10 a. C) Monitoring with trans‐9 a. D) Monitoring with cis‐9 a. E) Plausible reaction mechanism
Enantioselective Synthesis of Cyclopentenes by (3+2) Annulation via a 2‐Carbon Phosphonium
  • Article
  • Full-text available

May 2024

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18 Reads

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1 Citation

Herein we report a catalytic enantioselective (3+2) annulation, in which a vinyl phosphonium intermediate serves as the 2‐carbon component. The reaction involves an α‐umpolung β‐umpolung coupling sequence, enabled by β‐haloacrylates and chiral enantioenriched phosphepine catalysts. The reaction shows good generality, providing access to an array of cyclopentenes, with mechanistic studies supporting stereospecific formation of the vinyl phosphonium intermediate which, then undergoes annulation with turn over limiting catalyst elimination. Beyond defining a new approach to cyclopentenes, these studies demonstrate that β‐haloacrylates can replace ynoates in reaction designs that require exclusive umpolung coupling at the α‐ and β‐positions.

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Para-nitrophenyl butyrate hydrolysis assay. Para-nitrophenol absorbance at 405 nm, measured over 5 min, with buffer consisting of 20 mM Tris, 100 mM NaCl, 2.5%(v/v) methanol pH 8.5 (magenta) and with buffer with 100 µM ZnCl2 (black), with 100 nM dialysed protein (cyan) and with 100 nM dialysed protein and 100 µM ZnCl2 (green) (N = 3).
Crystallographic study of apo PTE-R18. (a) Structure of the apo PTE-R18 chain A active site from data collected at 13 keV (PDB entry 8uqw). (b) Fluorescence emission of the apo PTE-R18 crystal used to collect diffraction data at 13 keV. (c) Structure of the apo PTE-R18 chain A active site from data collected at 9.5 keV (PDB entry 8uqx) with the anomalous map at 3σ (cyan) and 5σ (magenta). (d) Fluorescence emission of the apo PTE-R18 crystal used to collect diffraction data at 9.5 keV.
Crystallographic study of Ln(III)-PTE-R18. (a) Structure of the Eu-PTE-R18 active site from data collected at 9.5 keV (PDB entry 8uqy) with the anomalous map at 5σ (cyan) and 10σ (magenta). (b) Fluorescence emission of the Eu-PTE-R18 crystal. (c) Structure of the Gd-PTE-R18 active site from data collected at 9.5 keV (PDB entry 8uqz) with the anomalous map at 4σ (cyan) and 20σ (magenta). (d) Fluorescence emission of the Gd-PTE-R18 crystal.
ITC analysis of Ln(III) binding to PTE. ITC data for metal binding to apo PTE-R18 processed using the A + B ↔ AB binding model (N = 1). (a) Isotherm for EuCl3. (b) Isotherm for GdCl3.
Mononuclear binding and catalytic activity of europium(III) and gadolinium(III) at the active site of the model metalloenzyme phosphotriesterase

March 2024

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45 Reads

Lanthanide ions have ideal chemical properties for catalysis, such as hard Lewis acidity, fast ligand-exchange kinetics, high coordination-number preferences and low geometric requirements for coordination. As a result, many small-molecule lanthanide catalysts have been described in the literature. Yet, despite the ability of enzymes to catalyse highly stereoselective reactions under gentle conditions, very few lanthanoenzymes have been investigated. In this work, the mononuclear binding of europium(III) and gadolinium(III) to the active site of a mutant of the model enzyme phosphotriesterase are described using X-ray crystallography at 1.78 and 1.61 Å resolution, respectively. It is also shown that despite coordinating a single non-natural metal cation, the PTE-R18 mutant is still able to maintain esterase activity.


Background. A) Oxidation of organophosphines to the phosphoranyl radical cation 1 is facile. B) Conceptual background. C) Zhu's, acyl radical coupling via 2 a. D) Shi's quinuclidine catalyzed coupling. E) Summary of reaction reported herein.
Reaction design and discovery. A) Oxidation and reduction potentials for key intermediates and catalysts. B) Mechanistic design. C) Reaction discovery, optimizations and control experiments.
Mechanistic studies. A) Phosphonium bromide 3 b can produce the cross‐coupled product 7 b. B) Stern–Volmer studies demonstrate quenching of excited state PC1 (4CzIPN) by vinyl phosphonium 3 b and BF3K salt 6 b in acetonitrile. C) TEMPO trapping studies with ynoate 5 b and phosphonium 3 b are consistent with formation of zwitterionic radical 4 b. D) Lack of cyclized material 11 is consistent with radical‐radical coupling.
Scope of the dual catalytic Giese coupling to give 7
Radical Coupling Initiated by Organophosphine Addition to Ynoates

June 2023

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60 Reads

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12 Citations

Dual nucleophilic phosphine photoredox catalysis is yet to be developed due to facile oxidation of the phosphine organocatalyst to the phosphoranyl radical cation. Herein, we report a reaction design that avoids this event and exploits traditional nucleophilic phosphine organocatalysis with photoredox catalysis to allow the Giese coupling with ynoates. The approach has good generality, while its mechanism is supported by cyclic voltametric, Stern–Volmer quenching, and interception studies.


Radical Coupling Initiated by Organophosphine Addition to Ynoates

May 2023

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11 Reads

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1 Citation

Angewandte Chemie

Dual nucleophilic phosphine photoredox catalysis is yet to be developed due to facile oxidation of the phosphine organocatalyst to the phosphoranyl radical cation. Herein, we report a reaction design that avoids this event and exploits traditional nucleophilic phosphine organocatalysis with photoredox catalysis to allow the Giese coupling with ynoates. The approach has good generality, while its mechanism is supported by cyclic voltametric, Stern–Volmer quenching, and interception studies.


Enantioselective Catalysis by the Umpolung of Conjugate Acceptors Involving N-Heterocyclic Carbene or Organophosphine 1,4-Addition

April 2023

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23 Reads

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23 Citations

Accounts of Chemical Research

ConspectusConjugate acceptors are one of the most common electrophilic functional groups in organic synthesis. While useful in a diverse range of transformations, their applications are largely dominated by the reactions from which their name is derived (i.e., as an acceptor of nucleophiles in the conjugate position). In 2014, we commenced studies focused on their ability to undergo polarity inversion through the conjugate addition of Lewis base catalysts. The first step in this process provides an enolate, from which the well-developed Rauhut-Currier (RC) and Morita-Baylis-Hillman (MBH) reactions can occur; however, tautomerization to provide a species in which the β-carbon of the conjugate acceptor can now act as a donor is also possible. When we commenced studies on this topic, reaction designs with this type of species, particularly when accessed using N-heterocyclic carbenes (NHCs), had been reported on only a handful of occasions. Despite a lack of development, conceptually it was felt that reactions taking advantage of polarity switching by Lewis base conjugate addition have a number of desirable features. Perhaps the most significant is the potential to reimagine a ubiquitous functional group as an entirely new synthon, namely, a donor to electrophiles from the conjugate position.Our work has focused on catalysis with both simple conjugate acceptors and also those embedded within more complicated substrates; the latter has allowed a series of cycloisomerizations and annulation reactions to be achieved. In most cases, the reactions have been possible using enantioenriched chiral NHCs or organophosphines as the Lewis base catalysts thereby delivering enantioselective approaches to novel cyclic molecules. While related chemistry can be accessed with either family of catalyst, in all cases reactions have been designed to take advantage of one or the other. In addition, a fine balance exists between reactions that exploit the initially formed enolate and those that involve the polarity-inverted β-anion. In our studies, this balance is addressed through substrate design, although catalyst control may also be possible. We consider the chemistry discussed in this Account to be in its infancy. Significant challenges remain to be addressed before our broad aim of discovering a universal approach to the polarity inversion of all conjugate acceptors can be achieved. These challenges broadly relate to chemoselectivity with substrates bearing multiple electrophilic functionalities, reliance upon the use of conjugate acceptors, and catalyst efficiency. To address these challenges, advances in catalyst design and catalyst cooperativity are likely required.



Citations (67)


... To this end, an expedient and versatile synthesis of 5 has been developed in collaboration with the Lupton group. 27 This should enable the creation of diverse analogues that can be used to probe the structure-activity relationship and mechanism of action. CC and GAI contributed equally. ...

Reference:

Discovery of late intermediates in methylenomycin biosynthesis active against drug-resistant Gram-positive bacterial pathogens
Phosphine mediated (3 + 2) cycloaddition of electron-poor terminal alkynes: a concise route to pre-methylenomycin C lactone.
  • Citing Preprint
  • May 2025

... Shi and co-workers applied a photoredox-promoted hydroalkylation strategy to the preparation of a library of DNAtagged alkenes by using xanthates as the alkyl radical precursors in the presence of Ir[FCF 3 (CF 3 )ppy] 2 (dtbbpy)PF 6 as the photoredox catalyst. 16 Phosphine organocatalysis was successfully merged with photoredox catalysis in the conversion of ynoates 3.1 to electronpoor olefins 3.3 under metal-free conditions, as described in Scheme 3. 17 The procedure involves a Giese-like coupling of 3.1 with alkylating agents trifluoroborate salts 3.2 in the presence of 4-CzTPN as the photoredox catalyst. 18 Such versatile strategy was successfully applied to the functionalization of small amino acids fragments as well as the preparation of polymers (an example in Scheme 4b). ...

Radical Coupling Initiated by Organophosphine Addition to Ynoates
  • Citing Article
  • May 2023

Angewandte Chemie

... It facilitates the synthesis of numerous bioactive molecules, natural products, synthetic materials, and so on by providing access to the current inaccessible reaction pathways. [1][2][3][4] A foremost umpolung strategy involves thiamine diphosphate (ThDP)-dependent enzyme or N-heterocyclic carbene (NHC) that undertakes unique transformations by rendering the nucleophilic aldehyde carbon. Within the past decade, the use of NHC as a catalyst has grown dramatically, a stream driven by an enriched method for its explorations of chemistry that has revealed its versatility in mediating a wide array of organic transformations with broad synthetic applicability. ...

Enantioselective Catalysis by the Umpolung of Conjugate Acceptors Involving N-Heterocyclic Carbene or Organophosphine 1,4-Addition
  • Citing Article
  • April 2023

Accounts of Chemical Research

... The F420H2 is used by different F420H2dependent reductases to reduce substrates in ene-reduction and enantioselective reductions. [12][13][14] The coenzyme F420 is used in the catalysis of different steps in antibiotic biosynthesis, xenobiotic biodegradation, climate change, reductive activation of prodrug nitroimidazole, and biosynthesis of natural products. 15,16 In this brief account, the isolation of F420, characterization by spectroscopic techniques, chemical synthesis, biosynthesis, and applications of various reactions of coenzyme F420 in the environment are discussed. ...

Asymmetric Ene‐Reduction by F 420 ‐Dependent Oxidoreductases B (FDOR‐B) from Mycobacterium smegmatis
  • Citing Article
  • March 2023

... F 420 belongs to the group of deazaflavin cofactors, and its distribution has been attributed to archaea and bacteria species [5]. Several studies have evaluated the relevance of F 420dependent enzyme families for biocatalysis [6][7][8][9][10][11][12] or predicted a great potential for biotechnological use. However, as the family of F 420 -dependent enzymes is highly diverse and the structure and function of a wide range of these enzymes are not characterized yet, the topic of F 420 -dependent enzymes is still underexplored [11]. ...

Asymmetric Ene‐Reduction by F420‐Dependent Oxidoreductases B (FDOR‐B) from Mycobacterium smegmatis

... In this study, commonly used 2-cyclopenten-1-one (1) and 4-nitrobenzaldehyde (2) were chosen as model substrates for the MBH reaction (Fig. 2a). According to the substrate similarity, substrate 1 (an α, β-unsaturated ketone) is typically used as a native substrate for the asymmetric C = C bond reduction catalyzed by old yellow enzymes (OYEs) 24,25 . Therefore, we hypothesized that a function for catalyzing MBH reaction can be developed based on the alkene reduction function (native function) of OYEs. ...

Asymmetric Ene-Reduction of α,β-Unsaturated Compounds by F 420 -Dependent Oxidoreductases A Enzymes from Mycobacterium smegmatis
  • Citing Article
  • December 2022

Biochemistry

... Also, 1,3-adamantanedicarboxylic acid and its precursors-1-adamantanecarboxylic and 3-hydroxy-1-adamantanecarboxylic acids-are among the strategically important scaffolds in organic synthesis. The synthetic potential of these compounds includes the preparation of substances with potential biological activity [9][10][11][12] and a range of practically useful properties [13][14][15][16][17][18]. Existing methods for the preparation of 1-adamantanecarboxylic acid include carboxylation of adamantane [19][20][21], 1-adamantanol [22][23][24][25][26] and its nitrate [27,28], 1-adamantyl halides under various conditions [29][30][31][32][33][34], oxidation of 1-adamantylmethanol [35][36][37][38][39][40] and 1-adamantanecarbaldehyde [41], and transformations of 1-adamantyl methyl ketone [42,43]. ...

Cage Hydrocarbons as Linkers in Dimeric Drug Design: Case Studies with Trimethoprim and Tedizolid
  • Citing Article
  • November 2022

Bioorganic & Medicinal Chemistry Letters

... Methylated 16S rRNA C1392 is located at the drug-binding pocket, but as this residue appears to form only weak hydrogen bonds (>4 Å) (8, 14,16), its modification cannot directly coordinate antibiotic binding. In structures of ribosomes from Staphylococcus aureus (17) and ...

A Structurally Characterized Staphylococcus aureus Evolutionary Escape Route from Treatment with the Antibiotic Linezolid

Microbiology Spectrum

... For this purpose, a commercially available Ion reactor from Vapourtec was employed. Using the same reactor, Lupton and Polyzos developed an elegant electrochemical method for the g-CeH arylation of amines (Figure 3d), in which the aryl nitrile reactant also acted as redox mediator [13]. ...

An Electrochemical γ-C-H Arylation of Amines in Continuous Flow
  • Citing Article
  • January 2022

Tetrahedron Letters

... Initially, tertiary phosphines were used in intermolecular variants [2]. Over the decades, several catalysts were used for this reaction, including phosphines [3][4][5][6], tertiary amines [7], organocatalysts [8,9], and NHC catalysts [10]. Recently, we have observed an increase in interest in the of chalcogen in the Rauhut-Currier reaction [11][12][13]. ...

Enantioselective Rauhut–Currier Reaction with β-Substituted Acrylamides Catalyzed by N-Heterocyclic Carbenes
  • Citing Article
  • November 2021

Organic Letters