David Sebag-Montefiore’s research while affiliated with University of Leeds and other places

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Publications (176)


Pre-treatment magnetic resonance imaging in anal cancer: large-scale evaluation of mrT, mrN and novel staging parameters
  • Article
  • Full-text available

August 2024

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21 Reads

British Journal of Cancer

Hema Sekhar

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Bernadette Carrington

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[...]

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Andrew G Renehan

Background In patients with squamous cell carcinoma of the anus (SCCA), magnetic resonance (MR) imaging is recommended for pre-treatment staging prior to chemo-radiotherapy (CRT), but large-scale evaluation of its staging performance is lacking. Methods We re-characterised pre-treatment MRs from 228 patients with non-metastatic SCCA treated consecutively by CRT (2006–2015) at one UK cancer centre. We derived TN staging from tumour size (mrTr) and nodal involvement (mrN), and additionally characterised novel beyond TN features such as extramural vascular invasion (mrEMVI) and tumour signal heterogeneity (mrTSH). Primary outcomes were 5-year overall survival (OS) and 3-year loco-regional failure (LRF). Time-to-event analyses used Kaplan-Meier estimates; Hazard Ratios (HRs) with confidence intervals (CIs) were derived from Cox models. Results With a median follow up of 60.9 months, 5-year OS was 74%. Poor OS was associated with increasing mrT (HR: 1.12 per cm [95% CI: 1.07–1.33]), nodal positivity (HR 2.08 [95% CI 1.23–3.52]) and mrEMVI (HR 3.66 [95% CI: 1.88–7.41]). 3-year LRF rate was 16.5%. Increased LRF was associated with increasing mrT (HR: 1.43 per cm [95% CI: 1.26–1.63]), nodal positivity (HR 2.70 [95% CI 1.39–5.24]) and mrTSH (HR 2.66 [95% CI 1.29–5.48]). Conclusions In SCCA, the study demonstrates that mrT and mrN stages are prognostic, while mrEMVI and mrTSH may be novel prognostic factors.

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Fig. 6: Clinical implementation of RSS. NCCN guidelines define clinical options for patients with rectal cancer. Adding a certified test based on the 33 gene signature described here would inform decision making, resulting in increased organ preservation, reduced treatment morbidity, and has potential to improve outcomes.
Identification and validation of a machine learning model of complete response to radiation in rectal cancer reveals immune infiltrate and TGFβ as key predictors

July 2024

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41 Reads

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2 Citations

EBioMedicine


FIGURE 1 Multivariate logistic regression analysis of all subjects in the combined dataset adjusted by cohort, T stage, and N stage. *OR is reported as "OR per SD" to account for diverse distributions. LateTA score, late transient-amplifying score; Ma-TBRS, macrophage TGFβ response signature.
FIGURE 3 (Continued) Interaction-specific univariate regression analysis of signatures associated with complete response (CR) in specific CMS subtypes demonstrated cytotoxic lymphocytes as an important predictor of CR in this treatment cohort (B and C).
RFS and OS outcomes in combined Grampian and GSE87211 cohorts (Cap+RT/5FU+RT subjects)
Stratification to Neoadjuvant Radiotherapy in Rectal Cancer by Regimen and Transcriptional Signatures

July 2024

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50 Reads

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1 Citation

Cancer Research Communications

Response to neoadjuvant radiotherapy (RT) in rectal cancer has been associated with immune and stromal features that are captured by transcriptional signatures. However, how such associations perform across different chemoradiotherapy regimens and within individual consensus molecular subtypes (CMS) and how they affect survival remain unclear. In this study, gene expression and clinical data of pretreatment biopsies from nine cohorts of primary rectal tumors were combined (N = 826). Exploratory analyses were done with transcriptomic signatures for the endpoint of pathologic complete response (pCR), considering treatment regimen or CMS subtype. Relevant findings were tested for overall survival and recurrence-free survival. Immune and stromal signatures were strongly associated with pCR and lack of pCR, respectively, in RT and capecitabine (Cap)/5-fluorouracil (5FU)–treated patients (N = 387), in which the radiosensitivity signature (RSS) showed the strongest association. Upon addition of oxaliplatin (Ox; N = 123), stromal signatures switched direction and showed higher chances to achieve pCR than without Ox (p for interaction 0.02). Among Cap/5FU patients, most signatures performed similarly across CMS subtypes, except cytotoxic lymphocytes that were associated with pCR in CMS1 and CMS4 cases compared with other CMS subtypes (p for interaction 0.04). The only variables associated with survival were pCR and RSS. Although the frequency of pCR across different chemoradiation regimens is relatively similar, our data suggest that response rates may differ depending on the biological landscape of rectal cancer. Response to neoadjuvant RT in stroma-rich tumors may potentially be improved by the addition of Ox. RSS in preoperative biopsies provides predictive information for response specifically to neoadjuvant RT with 5FU. Significance Rectal cancers with stromal features may respond better to RT and 5FU/Cap with the addition of Ox. Within patients not treated with Ox, high levels of cytotoxic lymphocytes associate with response only in immune and stromal tumors. Our analyses provide biological insights about the outcome by different radiotherapy regimens in rectal cancer.




The use of master protocols for efficient trial design to evaluate radiotherapy interventions: a systematic review

April 2024

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13 Reads

JNCI Journal of the National Cancer Institute

The aim of this review was to highlight why the use of master protocols trial design is particularly useful for radiotherapy intervention trials where complex-set up pathways (including quality assurance, user training, integrating multiple modalities of treatment) may hinder clinical advances. We carried out a systematic review according to PRISMA guidelines, reviewing the findings using a landscape analysis. Results were summarised descriptively, reporting on trial characteristics highlighting the benefits, limitations, and challenges of developing and implementing radiotherapy master protocols with three case studies selected to explore these issues in more detail. 12 studies were suitable for inclusion (4 platform trials, 3 umbrella trials, and 5 basket trials), evaluating a mix of solid tumour sites in both curative and palliative settings. The interventions were categorised into 1. Novel agent and radiotherapy combinations; 2. Radiotherapy dose personalisation; and 3. Device evaluation, with a case study provided for each intervention. Benefits of master protocol trials for radiotherapy intervention include: protocol efficiency for implementation of novel radiotherapy techniques; accelerating the evaluation of novel agent drug and radiotherapy combinations; and more efficient translational research opportunities, leading to cost savings and research efficiency to improve patient outcomes. Master protocols offer an innovative platform under which multiple clinical questions can be addressed within a single trial. Due to the complexity of radiotherapy trial set up, cost and research efficiency savings may be more apparent than in systemic treatment trials. Use of this research approach may be the change needed to push forward oncological innovation within radiation oncology.


Fig. 4 | Biopsy Simulation Experiments. a Example of a WSI with heterogeneous tile-level imCMS classification. b The shapes of simulated biopsy fragments are randomly sampled from annotations of biopsies in the GRAMPIAN and ARIS-TOTLE cohorts. c Illustration of a biopsy simulation procedure based on a source imaged resection specimen. Biopsy samples are randomly generated by sampling m = 1 biopsy fragments at random in the annotated tumor region of the resection specimen. This random process is repeated 10,000 times for each WSI of a resection dataset to form a simulated biopsy dataset. For each generated biopsy sample, imCMS is applied. The resulting distributions of class probability over a simulated biopsy dataset are shown on the right. d same as c but with m = 3 biopsy fragments. The spatial heterogeneity of tile-level predictions (shown in a) explains the different distributions obtained for each imCMS class across a simulated biopsy dataset. e Classification performance of trained imCMS models on simulated biopsy datasets as a function of the number of tumor biopsy fragments per sample. Dots with lines indicate the mean and standard deviation of the macro-average AUROC obtained by five models for each simulated dataset: [E4a] (left); [E4b] (right). The red dotted line indicates a 3% difference score with the macro-average AUROC obtained on corresponding fully imaged resection specimens. Scale bars represent 2 mm.
Fig. 5 | Distributions of cell types across resection and biopsy samples. Comparison of measures of abundance scores for ten representative cell types between 529 biopsy and 565 resection primary CRC samples of the cohorts used in this study (FOCUS, SPINAL, GRAMPIAN and ARISTOTLE) using the transcriptome-based MCP-counter (a, b) and xCell tools (c, d). Cell enrichment scores were measured both by CMS subgroup (b, d) and sample type (a, c). Cell type distributions by CMSclass do not differ between biopsy and resection samples, indicating that transcriptional CMS calls derived from biopsy samples robustly capture the underlying biology of CRC shown on the actual tissue. Distributions in panels a and c are similar (p > 0.25, ANOVA), whereas all p-values in panels b and d are significant (p < 0.05).
Fig. 6 | Gallery of image patches classified with high confidence for each CMS class. For each cohort (ARISTOTLE, SALZBURG, TCGA), we selected the 16 image patches (side 630 μm) from different patients, with highest probability score for each imCMS class (based on the ensemble model of experiment [E3a]). Visual interpretation confirms the existence of distinct morphological patterns within each predicted imCMS class. a imCMS1: increased lymphocytic infiltrates, poor tumor differentiation, focal mucin; b imCMS2: glandular differentiation with cribriform growth patterns and comedo-like necrosis associated with imCMS2; c imCMS3: glandular differentiation with ectatic mucin-filled glandular structures in combination with a minor component showing papillary and cribriform morphology; d imCMS4: prominent desmoplastic stromal reaction and dissociative tumor growth (tumor budding).
Image-based consensus molecular subtyping in rectal cancer biopsies and response to neoadjuvant chemoradiotherapy

April 2024

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158 Reads

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7 Citations

npj Precision Oncology

The development of deep learning (DL) models to predict the consensus molecular subtypes (CMS) from histopathology images (imCMS) is a promising and cost-effective strategy to support patient stratification. Here, we investigate whether imCMS calls generated from whole slide histopathology images (WSIs) of rectal cancer (RC) pre-treatment biopsies are associated with pathological complete response (pCR) to neoadjuvant long course chemoradiotherapy (LCRT) with single agent fluoropyrimidine. DL models were trained to classify WSIs of colorectal cancers stained with hematoxylin and eosin into one of the four CMS classes using a multi-centric dataset of resection and biopsy specimens ( n = 1057 WSIs) with paired transcriptional data. Classifiers were tested on a held out RC biopsy cohort (ARISTOTLE) and correlated with pCR to LCRT in an independent dataset merging two RC cohorts (ARISTOTLE, n = 114 and SALZBURG, n = 55 patients). DL models predicted CMS with high classification performance in multiple comparative analyses. In the independent cohorts (ARISTOTLE, SALZBURG), cases with WSIs classified as imCMS1 had a significantly higher likelihood of achieving pCR (OR = 2.69, 95% CI 1.01–7.17, p = 0.048). Conversely, imCMS4 was associated with lack of pCR (OR = 0.25, 95% CI 0.07–0.88, p = 0.031). Classification maps demonstrated pathologist-interpretable associations with high stromal content in imCMS4 cases, associated with poor outcome. No significant association was found in imCMS2 or imCMS3. imCMS classification of pre-treatment biopsies is a fast and inexpensive solution to identify patient groups that could benefit from neoadjuvant LCRT. The significant associations between imCMS1/imCMS4 with pCR suggest the existence of predictive morphological features that could enhance standard pathological assessment.


Brain Re-Irradiation Or Chemotherapy: a phase II randomised trial of re-irradiation and chemotherapy in patients with recurrent glioblastoma (BRIOChe) – protocol for a multi-centre open-label randomised trial

March 2024

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63 Reads

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1 Citation

BMJ Open

Introduction Glioblastoma (GBM) is the most common adult primary malignant brain tumour. The condition is incurable and, despite aggressive treatment at first presentation, almost all tumours recur after a median of 7 months. The aim of treatment at recurrence is to prolong survival and maintain health-related quality of life (HRQoL). Chemotherapy is typically employed for recurrent GBM, often using nitrosourea-based regimens. However, efficacy is limited, with reported median survivals between 5 and 9 months from recurrence. Although less commonly used in the UK, there is growing evidence that re-irradiation may produce survival outcomes at least similar to nitrosourea-based chemotherapy. However, there remains uncertainty as to the optimum approach and there is a paucity of available data, especially with regards to HRQoL. Brain Re-Irradiation Or Chemotherapy (BRIOChe) aims to assess re-irradiation, as an acceptable treatment option for recurrent IDH-wild-type GBM. Methods and analysis BRIOChe is a phase II, multi-centre, open-label, randomised trial in patients with recurrent GBM. The trial uses Sargent’s three-outcome design and will recruit approximately 55 participants from 10 to 15 UK radiotherapy sites, allocated (2:1) to receive re-irradiation (35 Gy in 10 daily fractions) or nitrosourea-based chemotherapy (up to six, 6-weekly cycles). The primary endpoint is overall survival rate for re-irradiation patients at 9 months. There will be no formal statistical comparison between treatment arms for the decision-making primary analysis. The chemotherapy arm will be used for calibration purposes, to collect concurrent data to aid interpretation of results. Secondary outcomes include HRQoL, dexamethasone requirement, anti-epileptic drug requirement, radiological response, treatment compliance, acute and late toxicities, progression-free survival. Ethics and dissemination BRIOChe obtained ethical approval from Office for Research Ethics Committees Northern Ireland (reference no. 20/NI/0070). Final trial results will be published in peer-reviewed journals and adhere to the ICMJE guidelines. Trial registration number ISRCTN60524.




Citations (62)


... Recently, we have assessed predictors of response with varying chemoradiotherapy regimens and show that the addition of oxaliplatin to CRT seems to reduce the negative predictive effect of stromal biology on pCR. 33 Further research, including acquisition of transcriptomics data in the relevant cohorts, will be needed to fully determine whether our findings may apply to patients treated with TNT, and also to stage I and IV patients as they were mostly missing in our cohorts. It is also unclear whether the same level of signal may be shown in patients with regimens other than with addition of fluoropyrimidines or even in different tumour types. ...

Reference:

Identification and validation of a machine learning model of complete response to radiation in rectal cancer reveals immune infiltrate and TGFβ as key predictors
Stratification to Neoadjuvant Radiotherapy in Rectal Cancer by Regimen and Transcriptional Signatures

Cancer Research Communications

... Currently, models used to predict the therapeutic effects of neoadjuvant radiotherapy in rectal cancer typically utilize gene expression levels to assess the radiosensitivity of tumor patients and forecast the outcomes of radiation therapy. However, these multi-gene expression models focus exclusively on the intrinsic sensitivity of tumors and do not provide information related to radiation dosage, which limits their predictive capability 32,33 . This study aims to RSI of patients based on gene expression related to radiation sensitivity in Chinese patients with LARC and establish a GARD(A model combining RSI and radiation physical dose to quantify the biological effects of a given dose on individual patients) model based on the RSI index. ...

Identification and validation of a machine learning model of complete response to radiation in rectal cancer reveals immune infiltrate and TGFβ as key predictors

EBioMedicine

... However, challenges in interpretability and generalizability often limit the application of these technologies in clinical practice, which are essential considerations for achieving widespread acceptability in the medical field 14 . Currently, numerous studies employ multiple-instance learning methods on WSIs to extract microscopic patch features for diagnosis and prognosis risk prediction [15][16][17][18] . Nevertheless, feature-based models sacrifice crucial tissue distribution information, which in turn limits the model's interpretability 19 . ...

Image-based consensus molecular subtyping in rectal cancer biopsies and response to neoadjuvant chemoradiotherapy

npj Precision Oncology

... Additionally, receipt of any treatment has been associated with improved survival even in those with poor PS [89]. The additional benefits of re-irradiation in addition to systemic therapy remains contested the results of the phase 2 BRIOChe [90] and phase 3 LEGATO [91] trials are awaited. Both studies include recurrent GBM patients of any age with no upper age limit but require a KPS of 70 + or PS 0-2 respectively. ...

Brain Re-Irradiation Or Chemotherapy: a phase II randomised trial of re-irradiation and chemotherapy in patients with recurrent glioblastoma (BRIOChe) – protocol for a multi-centre open-label randomised trial

BMJ Open

... Introduction 5-Fluoruracil (5-FU) and its oral prodrug capecitabine are mainstays in the treatment of many tumor entities including breast, head and neck, and gastrointestinal neoplasms. In radiotherapy, 5-FU is a vital component of several treatment protocols, such as for rectal [1][2][3], anal [4], and bladder cancer [5], as it has been shown to have radiosensitizing effects [6]. ...

Patient-reported outcomes in PROSPECT trial (Alliance N1048) – FOLFOX is not a panacea

Clinical and Translational Radiation Oncology

... The 24-month LRT was comparable to the TME group, with 60% achieving organ preservation. 9 The TAUTEM and STAR-TREC studies collectively demonstrate the viability of CRT combined with local resection to achieve optimal organ preservation in early rectal cancer. Additionally, the OPERA trial and WW2 study validate highdose CRT's efficacy and safety, enabling patients with early rectal cancer to attain radical outcomes via chemoradiation, thereby preserving the rectum. ...

STAR-TREC phase II: Can we save the rectum by watchful waiting or transanal surgery following (chemo)radiotherapy versus total mesorectal excision for early rectal cancer?
  • Citing Article
  • June 2022

Journal of Clinical Oncology

... The prognostic value of CMS classes has been reported in several studies 12,13 , yet their association with treatment outcome is an open research topic 11 . Recently, Domingo et al. 14 have described an association between pCR to neoadjuvant chemoradiotherapy and transcriptional CMS signatures in diagnostic RC biopsies, suggesting that molecular classification may also be used as a predictive biomarker for treatment stratification. Overall, early profiling of CMS classification in the clinical pathway promises to be highly relevant for personalized treatment decisions 15 . ...

A Machine Learning Model of Complete Response to Radiation in Rectal Cancer Reveals Immune Infiltrate and TGFβ Signalling as Key Predictors
  • Citing Article
  • January 2022

SSRN Electronic Journal

... However, TME poses significant perioperative mortality, short-and long-term morbidity risks, and also negatively affects patients' quality of life (QoL) [3]. Numerous studies have demonstrated that local excision (LE) by surgical techniques (TEM/Transanal Endoscopic Microsurgery, TAMIS/Transanal Minimally Invasive Surgery) after adjuvant radiotherapy (RT) and/or chemotherapy (CT) provides safe short-term alternatives regarding locoregional control and QoL [4][5][6][7]. Whilst improving certain parameters LE based on surgical techniques, given that it's almost always a full thickness bowel wall resection, it can complicate subsequent salvage surgery, which may be indicated in cases of inadequate oncological control [8]. In addition, certain tumor characteristics such as distance from the dentate line and tumor size may hinder or even restrict LE by surgical techniques. ...

Quality-of-life outcomes in older patients with early-stage rectal cancer receiving organ-preserving treatment with hypofractionated short-course radiotherapy followed by transanal endoscopic microsurgery (TREC): non-randomised registry of patients unsuitable for total mesorectal excision

The Lancet Healthy Longevity

... There are high curative rates associated with locoregional anal SCC treated with definitive chemoradiotherapy (dCRT), and survival rates have improved over recent years [15,27]. However, this is heavily influenced by patient-related factors including gender, socioeconomic status, HIV and human papillomavirus (HPV) status, and disease-related factors including tumour size, differentiation, and nodal involvement [11,28]. ...

Prognostic factors for patients with anal cancer treated with conformal radiotherapy—a systematic review

BMC Cancer

... Here, MPEs can provide the right expertise for successful trial leadership, providing a deep understanding of the technology in question, of complex data analyses, and of the practicalities of clinical implementation. Examples of trials with MPEs as co-PIs in RT include studies of the use of Image Guided Radiotherapy (IGRT) [12] and tumour tracking [13]; use of functional imaging for dose escalation in head-andneck cancer [14]; dose escalation [15] and on-treatment imaging [16] for organ preservation in rectal cancer; use of proton therapy for lung cancer [17]; physicist involvement in direct patient care [18]; metastatic thyroid cancer therapy with I-124 dosimetry [19]; and hepatocarcinoma selective internal RT with Y-90 micro-spheres [20]. Outside of RT, MPEs have, for example, led trials on the use of functional imaging for treatment response assessment in follicular lymphoma [21], Hodgkin lymphoma [21,22] and myeloma [23]. ...

A Phase II trial of Higher RadiOtherapy Dose In The Eradication of early rectal cancer (APHRODITE): protocol for a multicentre, open-label randomised controlled trial

BMJ Open