Daniel J. McSweeney’s research while affiliated with Universidad Autónoma de Baja California Sur and other places

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Publications (35)


Figure 3: Social network diagram depicting all distinctive individuals documented off Hawai‘i Island that link back to the main social cluster (n = 322). Individuals are presented by nodes and lines between nodes indicate individuals seen together in the same encounter. Visitors are depicted as black triangles, residents are depicted as gray squares, and core residents are depicted as white circles; individuals assigned to units are labeled with their unit designation and core residents not allocated to a social unit are labeled “NA.”
Table 3 . Longitudinally stable social units of short-finned pilot whales off the island of Hawai'i constructed from shared sighting histories and composed of key individuals and con- stant companions.
Figure 4: Distribution of association indices for distinctive individuals seen off the island of Hawai‘i five or more times: (top) maximum association index, and (bottom) average number of associates (i.e., group size) for each individual.
Figure 5: Dendrogram constructed using average-weight linkage hierarchical cluster analysis of distinctive short-finned pilot whales documented off the island of Hawai‘i on five or more occasions. The dashed line indicates cluster division occurs at AI = 0.48 (modularity = 0.798).
Figure 6: Standardized Lagged Association Rate for individuals documented off Hawai‘i Island using a moving average of 200,000 (top) and 250,000 (bottom) associations to create a smoother curve. Associations are defined as individuals grouped within an encounter (top) and individuals seen on the same day (bottom). Approximate standard error bars (±1 SE) were produced by jackknifing on each sampling period. The best-fit model (top: casual acquaintances, g′ = 0.046*e−0.0002τ) and (bottom: constant companions, g′ = 0.0191) was obtained using maximum likelihood methods; the null association rate is included for reference.

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High site fidelity, strong associations, and long-term bonds: Short-finned pilot whales off the island of Hawai‘i
  • Article
  • Full-text available

May 2015

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412 Reads

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56 Citations

Marine Mammal Science

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Daniel J. McSweeney

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Gregory S. Schorr

Studies of short-finned pilot whales suggest they travel in stable mixed-sex groups composed of strongly associated individuals; however, temporal analyses of social structure are lacking. To examine site fidelity, association patterns, and temporal relationships, we analyzed data from 267 encounters of this species off the island of Hawai‘i from 2003 through 2007, identifying 448 distinctive individuals (68.1% seen more than once). About 72% of the whales were linked by association into a single social network, suggesting the possibility of multiple populations using the area. Sighting histories suggested that only some individuals exhibit high site fidelity. Individuals demonstrated preferential associations and community division was strongly supported by average-linkage hierarchical cluster analysis of the association data. Nine longitudinally stable social units composed of key individuals and their constant companions were identified. Qualitative assignment of age and sex classes of unit members indicated that some segregation between adult males and female/calf pairs may occur. Temporal analyses of individuals encountered on the same day indicate stable long-term associations. Differential patterns of residency and site fidelity were unexpected and may be indicative of multiple populations around the main Hawaiian Islands. The presence of a resident population demonstrating strong, long-term site fidelity and associations off Hawai‘i Island may warrant special management considerations.

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Figure 1.   Collection locations of false killer whale samples. The groupings referred to in Table 2 Table 2 and Figure 3 are indicated, with the exception that “East Pacific” in Figure 3 refers to the ETP stratum plus one encounter (2 samples) south of the ETP. The CNP stratum consists of all samples within the ellipse except for those included in the MHI and NWHI strata (see Figure 2). Figure 2). Sample sizes are listed for the mtDNA data set followed by the nucDNA data set. Only the MHI, NWHI, CNP, and ETP strata are included in most analyses. 
Figure 2.   Collection locations of false killer whale samples around the Hawaiian Archipelago. Ellipses indicate the samples included in the NWHI and MHI strata. All other samples on this map are part of the CNP stratum. Sample sizes for the mtDNA/nucDNA data set are indicated. Solid gray lines show the boundaries of the Hawai’i and Palmyra (bottom center) EEZs. The dashed gray line shows the boundary of the Papahānaumokuākea Marine National Monument. 
Table 2 Haplotype frequencies for all false killer whales after replicates were removed
Figure 4. Graphical representation of Structure results for models containing (a) 2 and (b) 3 groups. Each vertical bar represents an individual and is shaded as to the proportion of the individual's ancestry that is attributable to groups 1 (orange), 2 (blue), and 3 (purple), as defined by Structure. MHI samples are divided into the 3 social clusters identified by Baird et al. (2012) as well as those samples for which social cluster affiliation is unknown. The remaining ndividuals are arranged into the strata indicated on Figures 1 and 2. 'S. of ETP' refers to 2 samples collected south of our ETP stratum.
Nuclear and Mitochondrial Patterns of Population Structure in North Pacific False Killer Whales (Pseudorca crassidens)

May 2014

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267 Reads

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64 Citations

Journal of Heredity

False killer whales (Pseudorca crassidens) are large delphinids typically found in deep water far offshore. However, in the Hawaiian Archipelago, there are 2 resident island-associated populations of false killer whales, one in the waters around the main Hawaiian Islands (MHI) and one in the waters around the Northwestern Hawaiian Islands (NWHI). We use mitochondrial DNA (mtDNA) control region sequences and genotypes from 16 nuclear DNA (nucDNA) microsatellite loci from 206 individuals to examine levels of differentiation among the 2 island-associated populations and offshore animals from the central and eastern North Pacific. Both mtDNA and nucDNA exhibit highly significant differentiation between populations, confirming limited gene flow in both sexes. The mtDNA haplotypes exhibit a strong pattern of phylogeographic concordance, with island-associated populations sharing 3 closely related haplotypes not found elsewhere in the Pacific. However, nucDNA data suggest that NWHI animals are at least as differentiated from MHI animals as they are from offshore animals. The patterns of differentiation revealed by the 2 marker types suggest that the island-associated false killer whale populations likely share a common colonization history, but have limited contemporary gene flow.






Figure 1: Survey effort trackline and sighting locations of melon-headed whales around the main Hawaiian Islands: 2000–2009.
Figure 2: Social network diagram showing associations of all well-photographed (rated 3 or 4) distinctive (rated 3 or 4) individual melon-headed whales. Nodes correspond to individual melon-headed whales, and lines between nodes represent presence within the same group. The majority of individuals (820, 78.4%) are linked to the main cluster (main Hawaiian Islands population), 180 (17.2%) are part of a second large cluster (Hawai‘i Island resident population), and the remaining 46 (4.4%) are part of three small clusters not linked to either of the main clusters (a cluster of three seen off Hawai‘i, a cluster of 18 seen off O`ahu, and a cluster of 25 seen off Hawai‘i).
Figure 3: Posterior distributions (bars) of abundance of the Hawai‘i Island resident and main Hawaiian Islands (MHI) populations and of the annual dispersal rate between them. Prior distributions are shown by solid lines.
Figure 4: Map of melon-headed whale sightings from dedicated surveys between 2002 and 2009. Filled triangles show encounter locations with the Hawai‘i Island resident population, unfilled triangles show encounter locations with the main Hawaiian Islands population, and the unfilled diamond represents the encounter with the group that did not link to either population. Depth contours are 500, 1,000, 3,000, and 4,000 m.
Figure 5: Box plots showing distribution of depths of melon-headed whale encounters by area and for Hawai‘i residents and all others only. Middle bold lines show median values, upper and lower lines of boxes encompass the spread of data from the first to the third quartile, and upper and lower horizontal lines show minimum and maximum depth values unless outliers are present (^), in which the horizontal line is defined as the third quartile plus 1.5.
Population structure of melon‐headed whales (Peponocephala electra) in the Hawaiian Archipelago: Evidence of multiple populations based on photo identification

September 2011

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448 Reads

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47 Citations

Marine Mammal Science

Despite the presence of melon-headed whales in tropical and subtropical waters worldwide, little is known about this species. To assess population structure in Hawai'i, dedicated field efforts were undertaken from 2000 to 2009. Using only good quality photographs, there were 1,433 unique photo-identified individuals, of which 1,046 were distinctive. Of these, 31.5% were seen more than once. Resighting data combined with social network analyses showed evidence of two populations—a smaller, resident population, seen exclusively off the northwest region of the island of Hawai'i, and a larger population, seen throughout all the main Hawaiian Islands (hereafter the “main Hawaiian Islands” population). A Bayesian analysis examining the probability of movements of individuals between populations provided a posterior median dispersal rate of 0.0009/yr (95% CI = 0–0.0041), indicating the populations are likely demographically independent. Depth of encounters with the Hawai'i Island resident population was significantly shallower (median = 381 m) than those with the main Hawaiian Islands population (median = 1,662 m). Resightings of individuals have occurred up to 22 yr apart for the Hawai'i Island resident population and up to 13 yr apart for the main Hawaiian Islands population, suggesting long-term residency to the islands for both populations.


Population structure of island‐associated dolphins: Evidence from mitochondrial and microsatellite markers for common bottlenose dolphins (Tursiops truncatus) around the main Hawaiian Islands

July 2011

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160 Reads

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64 Citations

Marine Mammal Science

We used mitochondrial and nuclear genetic markers to investigate population structure of common bottlenose dolphins, Tursiops truncatus, around the main Hawaiian Islands. Though broadly distributed throughout the world's oceans, bottlenose dolphins are known to form small populations in coastal waters. Recent photo-identification data suggest the same is true in Hawaiian waters. We found genetic differentiation among (mtDNA ΦST= 0.014–0.141, microsatellite F’ST= 0.019–0.050) and low dispersal rates between (0.17–5.77 dispersers per generation) the main Hawaiian Island groups. Our results are consistent with movement rates estimated from photo-identification data and suggest that each island group supports a demographically independent population. Inclusion in our analyses of samples collected near Palmyra Atoll provided evidence that the Hawaiian Islands are also occasionally visited by members of a genetically distinct, pelagic population. Two of our samples exhibited evidence of partial ancestry from Indo-Pacific bottlenose dolphins (T. aduncus), a species not known to inhabit the Hawaiian Archipelago. Our findings have important implications for the management of Hawaiian bottlenose dolphins and raise concerns about the vulnerability to human impacts of pelagic species in island ecosystems.


Eddies as offshore foraging grounds for melon‐headed whales (Peponocephala electra)

July 2011

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95 Reads

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49 Citations

Marine Mammal Science

Movements of upper trophic level predators in an open ocean environment should be driven, in part, by the distribution, density, and movements of their prey. Surveys have shown that cetacean densities are higher closer to shore around the main Hawaiian Islands than in offshore waters (Barlow 2006), presumably reflecting increased productivity or spatial and temporal predictability of prey associated with island effects (Baird et al. 2008a). A number of high trophic level pelagic species have been shown to concentrate around and/or use mesoscale eddies as foraging habitat (e.g., Davis et al. 2002, Seki et al. 2002, Bakun 2006, Polovina et al. 2006, Yen et al. 2006). The islands, and their interaction with winds and currents, create a complex system of eddies that may also concentrate some prey types farther offshore (Seki et al. 2002), but whether island-associated cetacean populations use these offshore eddy systems for foraging habitat is unknown.


Table 1 . Information on false killer whales tagged 1 during 2009
Figure 2. Maps of locations of satellite-tagged false killer whales. Top four-individuals tagged in October 2009 off O'ahu (fifth individual tagged in October shown in Figure 5). Bottom fourindividuals tagged in December 2009 off Hawai'i.
Table 2 .
Movements and Spatial Use of False Killer Whales in Hawaii: Satellite Tagging Studies in 2009

February 2011

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107 Reads

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3 Citations

Movements and spatial use of Hawaiian insular false killer whales was examined using data from nine individuals satellite-tagged in 2009; five tagged off the island of O'ahu in October and four tagged off the island of Hawai'i in December. A total of 3,782 locations were available after filtering, over periods up to 104.8 days (median = 70.7 days), more than doubling the location data available from this population. Assessment of distance between pairs of individuals with overlapping data indicated we obtained movement information from at least five and possibly seven different social groups of false killer whales. All tagged individuals remained in association with the main Hawaiian Islands. While movements of one individual extended up to 112.8 km from shore, into a water depth of approximately 5,400 m, the average distance from shore ranged from about 11 to 23 km, in depths averaging about 500 to about 1,200 m. Four of the five individuals tagged off O'ahu moved west to Kaua'i and Ni'ihau, providing evidence the Hawaiian insular population uses the waters around the westernmost of the main Hawaiian Islands. There were no significant differences in the proportion of time spent using windward versus leeward sides of the islands. One individual that had been tagged previously (in 2008) showed very different spatial use patterns in 2008 versus 2009. Overall the data provides a more robust assessment of spatial use and movements of Hawaiian insular false killer whales that can be used in helping assess critical habitat if this population is listed under the Endangered Species Act.


Citations (31)


... Short-finned pilot whales (Globicephala macrorhynchus) are distributed in tropical and warm temperate waters of the Atlantic, Pacific and Indian Oceans (Bernard and Reilly 1999). This species is abundant in coastal waters off Japan (Kasuya and Tai 1993; Kanaji et al 2011), Baja California (Salvadeo et al 2009; Rosales-Nanduca et al 2011), California (Norris and Prescott 1961; Shane and McSweeney 1990; Shane 1995), French Polynesia (Gannier 2000) and the islands of Hawai'i (Shane and McSweeney 1990; Baird et al 2006), the Carribbian (Caldwell et al 1971; Mignuzzi-Giannoni 1998), the Maldives (Anderson 2005), Cape Verde (Hazevoet et al 2000; Hazevoet et al 2010) and the Canaries (see below). ...

Reference:

Catalogue of repetitive call vocalizations recorded among assemblages of short-finned pilot whales off Tenerife during two field seasons (1996 and 2001)
A SURVEY FOR ODONTOCETE CETACEANS OFF KAUA‘I AND NI‘IHAU, HAWAI‘I, DURING OCTOBER AND NOVEMBER 2005: EVIDENCE FOR POPULATION STRUCTURE AND SITE FIDELITY

... The ongoing studies on false killer whales in the Hawaiian Islands have shown that there are three discrete yet partially overlapping populations (Chivers et al., 2007, Chivers et al. 2010Baird et al., 2008, Baird et al., 2013Martien et al., 2014). Individuals within a population maintain strong bonds over decades, hunt cooperatively, and share prey with hunting partners (Baird, 2016;Martien et al., 2019). ...

Evidence of Genetic Differentiation for Hawaii Insular False Killer Whales (Pseudorca crassidens)
  • Citing Article
  • January 2010

... The short-finned pilot whale Globicephala macrorhynchus, hereafter pilot whale, is a deep-diving, highly mobile marine top predator, distributed throughout tropical and warm temperate waters (Betty et al. 2023), which exhibits a complex social and geographical ecology (Olson 2009;Mahaffy et al. 2015;Aguilar de Soto and Alves 2023). Pilot whales are typically organized in matrilineal groups with stable and longterm social bonds (Betty et al. 2023). ...

High site fidelity, strong associations, and long-term bonds: Short-finned pilot whales off the island of Hawai‘i

Marine Mammal Science

... Thus, there is horizontal overlap between where white sharks were detected and beaked whale foraging grounds. Further, after a deep dive the whales spend an extensive period (66 -155 min) in the upper 50 m of the water column (Baird et al., 2006;Joyce et al., 2020), which is the vertical zone white sharks spent 95% of their time when overwintering in the SE U.S. and GOM (Skomal et al., 2017). Thus, these local cetaceans, or perhaps the squid beak whales are hunting, could provide an important prey source and motivate white sharks to use the TOTO. ...

DIVING BEHAVIOR AND ECOLOGY OF CUVIER'S (Ziphius cavirostris) AND BLAINVILLE'S BEAKED WHALES (Mesoplodon densirostris) IN HAWAI ' I

... No density estimates are available from line-transect surveys, as there are generally too few sightings attributable to this population available from line-transect surveys (Bradford et al., 2020). Information on the population's range and high-density areas comes primarily from a relatively large data set of satellite-tagged individuals (Baird et al., 2012). Individuals from this population are known to eat a variety of pelagic and reef-associated game fish (Baird, 2016), most of which are the target of commercial and recreational fisheries around the islands. ...

Assessment of Range and Primary Habitats of Hawaiian Insular False Killer Whales: A Scientific Basis for Determination of "Critical Habitat"

... Signals with SNR less than 5 dB and peak frequencies below 10 kHz contained temporal and spectral properties that suggested they were noise and as such, these signals were not included in the analysis. Center frequency and bandwidth were calculated according to the definition by Au (1993). ...

Characterization of Marine Mammal Recordings from the Hawaii Range Complex

... As a result of the maternal mode of inheritance, patterns of mitochondrial differentiation are particularly useful for assessing demographic independence. Female philopatry to either social groups or natal areas is often inferred where metrics of mtDNA genetic differentiation exceed those estimated from nuclear markers (e.g., Durante et al. 2022;Kerth, Mayer, and Petit 2002;Martien et al. 2014;Roycroft, Le Port, and Lavery 2019). Here, we see evidence suggesting that female natal philopatry may be driving population genetic structure among Alaska harbour porpoises based on contrasting patterns of genetic divergence from nuclear SNPs and mitochondrial control region sequences. ...

Nuclear and Mitochondrial Patterns of Population Structure in North Pacific False Killer Whales (Pseudorca crassidens)

Journal of Heredity

... However, they have also been sighted in shallow coastal and inland water habitats (Leatherwood et al., 1989;Acevedo-Gutiérrez et al., 1997;Mobley et al., 2000;Baird et al., 2005). In Hawai'i, two demographically isolated and genetically differentiated stocks have been identified: a large offshore stock and a small insular stock associated with shallow waters around the main Hawaiian Islands (Chivers et al., 2007(Chivers et al., , 2010Baird et al., 2008a;Oleson et al., 2010;Carretta et al., 2011). Most recently, a third stock has been recognized; false killer whales inhabiting the insular waters of the Northwestern Hawaiian Islands (Bradford et al., 2012). ...

A survey to assess overlap of insular and offshore false killer whales (Pseudorca crassidens) off the island of Hawai'i

... social group, sex, age) to estimate population-level animal space use; (2) analysing spatial survey effort data, computing UD estimates for research efforts to obtain estimates of coverage; (3) determining availability of animals to survey coverage by finding the interaction between (1) and (2), or the overlap; and (4) incorporating this overlap measure within the detection process of a capture-recapture model. We will first describe these steps, then detail our simulation analysis to assess performance compared to traditional CR models, and finally apply this method to estimate abundance of a population of false killer whales in the main Hawaiian Islands, for which both capturerecapture (Bradford et al., 2018) and satellite tag (Baird et al., 2010(Baird et al., , 2012) datasets exist. ...

Movements and habitat use of satellite-tagged false killer whales around the main Hawaiian Islands

Endangered Species Research