Dai Zhang’s research while affiliated with Chinese Academy of Medical Sciences & Peking Union Medical College and other places

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Publications (281)


Overview of the study scheme
a Neurodynamic embedded contrastive variational autoencoder (ND-CVAE) Model. Shared and SCZ-specific features were extracted from two encoders and used to construct the source model of brain dynamics. b Evaluations and comparisons of shared and SCZ-specific features, including subject-level parameters θs\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${{\boldsymbol{\theta }}}^{{\rm{s}}}$$\end{document}, region-level parameters θr\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${{\boldsymbol{\theta }}}^{{\rm{r}}}$$\end{document}, and the hidden states of node systems x\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${\boldsymbol{x}}$$\end{document}. c Neurodynamic-clinic association analysis. The relationship between the encoded features and participant properties were mapped via PLS regression. The underlying potential micro-transcriptomic mechanisms were explored by transcription association analyses.
Evaluations of subject-level parameters and region-level parameters
a Scatter plots showing the associations between SCZ-specific θ1s\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${{\boldsymbol{\theta }}}_{1}^{{\rm{s}}}$$\end{document} and PANSS total, positive, negative and general scores. b Regional mean SCZ-specific θ1r\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${{\boldsymbol{\theta }}}_{1}^{{\rm{r}}}$$\end{document} and θ2r\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${{\boldsymbol{\theta }}}_{2}^{{\rm{r}}}$$\end{document} (100 regions) inferred by averaging the parameter matrix (456 subjects × 100 regions) on the subject dimension. c Regional correlations of SCZ-specific θ1r\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${{\boldsymbol{\theta }}}_{1}^{{\rm{r}}}$$\end{document} and θ2r\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${{\boldsymbol{\theta }}}_{2}^{{\rm{r}}}$$\end{document} (100 regions × 100 regions) inferred by taking the Pearson correlation coefficients of the parameter matrix (456 subjects × 100 regions) on the subject dimension. d Dissimilarity matrices of shared and SCZ-specific subject-level parameters and region-level parameters compared with dissimilarity based on different participant properties. Model fit was assessed using the Kendall rank correlation coefficient (Kendall τ). Black circles represent the results of 10 random resampling. Gray diamonds represent the results of directly selecting the mean value.
Evaluations of the hidden states of node systems
a Inferred dynamics in state space of two example nodes. The vector field is assessed assuming zero network input and the inferred parameters. Background color indicates velocity magnitude; white lines indicate encoded time series of the node states; red triangles indicate fixed points. b Regional averaged attractors of state x1 (100 regions) inferred by averaging the attractor matrix of state x1 (471 NCs or 456 SCZs ×100 regions) on the subject dimension. From left to right are the shared state x1 of the NC group, the shared state x1 of the SCZ group, and the SCZ-specific state x1 of the SCZ group. The colorbar range is set identically for the first two groups. The shared states’ attractors of the NC group and the SCZ group exhibit similar brain gradient patterns, with the latter showing smaller inter-regional variances. However, the specific state x1 of the SCZ group present distinctive gradient patterns compared to both shared states. c Spatiotemporal classification model based on deep-learning. The spatial module incorporates fully connected layers (ResNet) to process spatial information at each time step, while the temporal module utilizes attention layers (Transformer) to model temporal brain source dynamics. d The classification accuracy of the spatiotemporal model on different datasets. From left to right, the three columns represent the classification accuracy of the model on three different test sets: the original test set in the training, and simulated test sets generated with and without SCZ-specific states. Compared to the simulated test set generated without SCZ-specific states, the simulated test set using SCZ-specific states exhibits higher classification accuracy. The result suggests that SCZ-specific states contribute to capturing information more accurately from SCZ brain activity.
Spatiotemporal dynamic patterns in two PLS modes
a, f Average brain loadings obtained by averaging the loadings of brain features along the feature dimension in the two PLS modes. b, g Scatter plots of brain feature PLS scores and PANSS PLS score, derived from linear combinations of brain spatiotemporal dynamic features and PANSS scores, respectively. c, h Bar plots depicting the null distribution of singular values of the covariance matrices through permutation testing, with a red dashed line marking the actual value. d, i PANSS score loadings calculated by measuring Pearson correlations between the three PANSS scores and the corresponding latent variable (i.e., PANSS PLS scores) driven by the PANSS scores e The average feature loadings obtained by averaging the loadings of brain features along the brain dimension in the two PLS modes. The blue bars represent mode 1, and the red bars represent mode 2.
Micro-transcriptomic mechanisms of brain loading pattern in mode 1 and mode2
a, e Average brain loadings in mode 1 and mode 2. b, f Genes that positively and negatively weighted values for the subsequent GO biological process enrichment. c, g Scatter plots of Gene PLS scores and average brain loadings in mode 1 and mode 2. d, h The first 10 biological process terms of enrichment analysis for genes with weight |z | > 3. The size of the circle represents the number of genes involved in the specific term, and the color represents the corrected P values. (P < 0.05, FDR-BH corrected).
Disorder-specific neurodynamic features in schizophrenia inferred by neurodynamic embedded contrastive variational autoencoder model
  • Article
  • Full-text available

December 2024

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106 Reads

Translational Psychiatry

Chaoyue Ding

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Yuqing Sun

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[...]

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Neurodynamic models that simulate how micro-level alterations propagate upward to impact macroscopic neural circuits and overall brain function may offer valuable insights into the pathological mechanisms of schizophrenia (SCZ). In this study, we integrated a neurodynamic model with the classical Contrastive Variational Autoencoder (CVAE) to extract and evaluate macro-scale SCZ-specific features, including subject-level, region-level parameters, and time-varying states. Firstly, we demonstrated the robust fitting of the model within our multi-site dataset. Subsequently, by employing representational similarity analysis and a deep learning classifier, we confirmed the specificity and disorder-related information capturing ability of SCZ-specific features. Moreover, analysis of the attractor characteristics of the neurodynamic system revealed significant differences in attractor space patterns between SCZ-specific states and shared states. Finally, we utilized Partial Least Squares (PLS) regression to examine the multivariate mapping relationship between SCZ-specific features and symptoms, identifying two sets of correlated modes implicating unique molecular mechanisms: one mode corresponding to negative and general symptoms, and another mode corresponding to positive symptoms. Our results provide valuable insights into disorder-specific neurodynamic features and states associated with SCZ, laying the foundation for understanding the intricate pathophysiology of this disorder.

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Fig. 2 Impaired excitatory synaptic transmission reflected by miniature postsynaptic currents in Opcml −/− mice. A-C Representative traces and statistics of miniature excitatory postsynaptic currents recorded from in CA1 PNs of Opcml +/+ and Opcml −/− mice. Pooled data of mEPSCs showing KO neurons decreased in mean mEPSC amplitude but no change in mean mEPSC frequency compared to WT. Two-tailed unpaired student's t test, n = 16/3 for each group. For (B), t = 2.962, P = 0.0059; for (C), t = 0.6394, P = 0.5274. D-F Representative traces and statistics of miniature inhibitory postsynaptic currents showing unchanged inhibitory synaptic transmission in KO neurons compared to WT. Two-tailed unpaired student's t test, n = 17/3 for each group. For (E), t = 0.07566, P = 0.9402; for (F), t = 0.3550, P = 0.7249. Data are presented as the mean ± SEM. P < 0.01, **; P > 0.05, n.s., no significance
Fig. 3 Impaired glutamatergic transmission reflected by evoked excitatory postsynaptic currents in Opcml −/− mice. A Photomicrograph showing recording of E-stim (electric stimulation) evoked excitatory postsynaptic currents (eEPSCs) in hippocampal slices (bar, 200 μm). A glass electrode for recording in CA1 PN and a concentric stimulation electrode nearby Schaffer collateral were placed as illustrated. B-E Representative traces (B) and statistics of eEPSCs showing decreased amplitude (C) but unchanged rise time (D) and decay time (E) in Opcml-deficient PNs compared to wildtype. Two-tailed unpaired student's t test, n = 13/5 for Opcml +/+ and n = 14/5 for Opcml −/− mice. For (C), t = 3.209, P = 0.0036; for (D), t = 0.05340, P = 0.9578; for (E), t = 0.007766, P = 0.9939. Data are presented as the mean ± SEM. P < 0.01, **; P < 0.05, *; P > 0.05, n.s., no significance
Fig. 4 Intact presynaptic glutamate release in Opcml −/− mice. A, B Representative EPSCs evoked by double pulses (arrowheads) with interval at 50 ms and related statistics of paired-pulse ratio. C, D Representative EPSCs evoked by double pulses with interval at 100 ms and related statistics of paired-pulse ratio. Two-tailed unpaired student's t test for (B and D), n = 14/6 for each. For (B), t = 0.1648, P = 0.8704; for (D), t = 1.488, P = 0.1487. E The plot of PPR vs. different inter-stimulus intervals (10, 20, 50, 100, 200, 300, 600 and 1000 ms). Two-way ANOVA with Sidak's multiple comparisons test, n = 14/6 for each group, main effect of genotype P = 0.8022, F (1, 208) = 0.06288; main effect of inter-stimulation interval P < 0.0001, F (7, 208) = 17.13; interaction effect of inter-stimulation interval x genotype P = 0.9328, F (7, 208) = 0.9328. Data are presented as the mean ± SEM. P > 0.05, n.s., no significance
Fig. 7 Synaptic mechanism cartoon of glutamatergic transmission impairment in the hippocampus of a schizophrenia mouse model. Dysfunctions of AMPA and NMDA receptors leads to decreased neuron excitability and impaired excitatory synaptic transmission in hippocampus of Opcml-deficient mice, which can be rescued by aripiprazole administration
Mechanisms of glutamate receptors hypofunction dependent synaptic transmission impairment in the hippocampus of schizophrenia susceptibility gene Opcml-deficient mouse model

October 2024

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31 Reads

Molecular Brain

Schizophrenia is a severe psychiatric disorder with high heritability, characterized by positive and negative symptoms as well as cognitive abnormalities. Dysfunction in glutamate synapse is strongly implicated in the pathophysiology of schizophrenia. However, the precise role of the perturbed glutamatergic system in contributing to the cognitive abnormalities of schizophrenia at the synaptic level remains largely unknown. Although our previous work found that Opcml promotes spine maturation and Opcml -deficient mice exhibit schizophrenia-related cognitive impairments, the synaptic mechanism remains unclear. By using whole-cell patch clamp recording, we found that decreased neuronal excitability and alterations in intrinsic membrane properties of CA1 PNs in Opcml -deficient mice. Furthermore, Opcml deficiency leads to impaired glutamatergic transmission in hippocampus, which is closely related to postsynaptic AMPA/NMDA receptors dysfunction, resulting in the disturbances of E/I balance. Additionally, we found that the aripiprazole which we used to ameliorate abnormal cognitive behaviors also rescued the impaired glutamatergic transmission in Opcml -deficient mice. These findings will help to understand the synaptic mechanism in schizophrenia pathogenesis, providing insights into schizophrenia therapeutics with glutamatergic disruption.


Association between dietary fat intake and the risk of Alzheimer's disease: Mendelian randomisation study

October 2024

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41 Reads

The British journal of psychiatry: the journal of mental science

Background Observational studies have shown a controversial relationship between dietary fat intake and Alzheimer's disease, and the causal effects are unclear. Aims To assess the causal effects of total fat, saturated fat and polyunsaturated fat (PUF) intakes on the risk of Alzheimer's disease. Method A two-sample Mendelian randomisation analysis was performed using genome-wide association study summary statistics on different types of fat intake from UK Biobank ( n = 51 413) and on late-onset Alzheimer's disease (LOAD; 4282 cases, n = 307 112) and all forms of Alzheimer's disease (6281 cases, n = 309 154) from the FinnGen consortium. In addition, a multivariable Mendelian randomisation (MVMR) analysis was conducted to estimate the effects independent of carbohydrate and protein intakes. Results Genetically predicted per standard deviation increase in the total fat and saturated fat intakes were associated with 44 and 38% higher risks of LOAD (total fat: odds ratio = 1.44, 95% CI 1.03–2.02; saturated fat: odds ratio = 1.38, 95% CI 1.002–1.90; P = 0.049). The associations remained significant in the MVMR analysis (total fat: odds ratio = 3.31, 95% CI 1.74–6.29; saturated fat: odds ratio = 2.04, 95% CI 1.16–3.59). Total fat and saturated fat intakes were associated with a higher risk of all forms of Alzheimer's disease in the MVMR analysis (total fat: odds ratio = 2.09, 95% CI 1.22–3.57; saturated fat: odds ratio = 1.60, 95% CI 1.01–2.52). The PUF intake was not associated with LOAD or all forms of Alzheimer's disease. Conclusions This study indicated that total dietary fat intake, especially saturated fat, contributed to the risk of Alzheimer's disease, and the effects were independent of other nutrients. These findings informed prevention strategies and management for Alzheimer's disease directly towards reducing dietary saturated fat intake.



Gene expression profiles and DNA methylation analyses. A ReHo associated with the interaction between PM2.5 exposure and PRS-MDD in the individuals with higher MDD genetic risk was parcellated into the Desikan-Killiany (DK) atlas and the overlapped 1209 samples with averaged gene expressions were obtained from Allen Human Brain Atlas in cortical regions across two postmortem brains. After generating the gene expression matrix, partial least squares (PLS) regression was used to identify imaging-transcriptomic associations, and the regional first PLSR component (PLS1) scores (a weighted sum of 9854 gene expression scores) and regional changes were observed (rPearson = 0.254). The ranked PLS1 loadings were shown with gene names and weights|. After overlapping with genes that showed precuneus-specific expression, DNA methylation probes located in CpG island in 14 genes were inputted to test the association between the probes and ReHo showing gene-by-environment interaction. CpG island cg18219563 in the SLC30A3 gene promotor region showed a suggestive negative association (P = 0.0040). B Enrichment of biological processes of genes showing significant spatial expressions. The gene ontology (GO) biological processes were aligned with the overlapped gene list using Metascape [35] (https://metascape.org) and corrected by FDR with P < 0.05. C Protein products interaction of genes showing significant spatial expressions plus interleukin 6. The top 50 genes with the positive weight of PLS1 genes using PLSR in participants with a higher MDD risk plus interleukin 6 were entered into protein–protein interactions analysis. Edge colors represent different evidence underlying predicted protein–protein interactions in the STRING database. Images within spheres represent known protein structures; node color is aesthetic
Study overview. We hypothesized that air pollution increased the risk of cognitive impairment in people with a high genetic predisposition to depression by altering resting-state brain function (regional activity and brain network) via DNA methylation. The gene-environment interactive effect can be evaluated via a multiplicative interaction term between the air pollutant and the polygenic risk score (PRS) of depression to evaluate how air pollutants modified the effect of genetic susceptibility on brain function and cognition. First, we examined the effect of air pollution and genetic risk of depression on cognitive performance. Then, we elucidated the impact of recent air pollution exposure on resting-state brain function concerning polygenic risk for MDD across multiple levels of brain function, that is, regional activity and brain network. Finally, the underlying DNA methylation mechanism was explored. PM2.5, particulate matter less than 2.5 μm; rsFC, resting-state functional connectivity
Interaction between PM2.5 Exposure and polygenic risk of MDD on resting-state brain connectivity. A The regional homogeneity (ReHo) in the right precuneus gyrus was negatively associated with the interaction between PM2.5 exposure and PRS-MDD (peak at [3 − 63 57], t = 4.99, cluster size = 56 voxels, Pcluster-level FWE = 0.024). The color bar indicates the t-value of generalized linear analysis. B With increasing PM2.5 exposure, participants with higher PRS-MDD (high PRS) showed decreased ReHo in the precuneus, while those with lower PRS-MDD (low PRS) showed increased ReHo. C Correlation between the partial least square regression (PLSR) component scores and the interaction term of PM2.5 exposure and polygenic risk for MDD (n = 497). The PLSR-1 component explained the largest variance and showed a significant gene-by-environment interaction. The engagement of brain networks in PLSR-1 was disproportionately accentuated by PM2.5 exposure in those with higher polygenic risk for MDD. While significant in the entire sample, this interaction is shown in a subset of individuals with relatively higher polygenic risk for depression (red, > mean + SD, n = 74) and a subset of individuals with relatively lower polygenic risk (blue, < mean − SD, n = 83). D The engagement of brain networks in PLSR-1 was disproportionately accentuated by PM2.5 exposure in those with higher polygenic risk for MDD. While significant in the entire sample, this interaction is shown in a subset of individuals with relatively higher polygenic risk for depression (red, > mean + SD, n = 74) and a subset of individuals with relatively lower polygenic risk (blue, < mean − SD, n = 83). E Partial least square regression analysis revealed 46 rsFC survived with a significant correlation with the gene-by-environment interaction between polygenic risk of MDD and PM2.5 Exposure (8 rsFC with loading Z > 0, 38 rsFC with loading Z < 0). The outermost circle represents the name of the brain lobes, and the second circle represents the brain regions within the lobes with the same color. Red lines represent rsFC with positive loadings, and blue lines represent rsFC with negative loadings. For the full names corresponding to the abbreviations of the brain regions in the innermost circle, see Supplementary Table S5. F The correlation between PM2.5 and left angular gyrus (AG)—left cuneus (CUN) resting-state functional connectivity was plotted in a subsample of individuals with relatively higher polygenic risk of depression (PRS > mean + SD and n = 74, red), compared to those with relatively lower polygenic risk (PRS < mean − SD and n = 82, blue). G The correlation between left angular gyrus (AG)—left cuneus (CUN) resting-state functional connectivity and processing speed was plotted in a subsample of individuals with relatively higher polygenic risk of depression (PRS > mean + SD and n = 74, red), compared to those with relatively lower polygenic risk (PRS < mean − SD and n = 82, blue). PM2.5, particulate matter less than 2.5 μm; PRS-by-PM2.5 interaction effect, interactive effect of air pollution and genetic risk of depression; MDD, major depressive disorder; PRS, polygenic risk score of MDD
Interactive effect of air pollution and genetic risk of depression on processing speed by resting-state functional connectivity of occipitoparietal network

September 2024

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92 Reads

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1 Citation

BMC Medicine

Background Air pollution, a reversible environmental factor, was significantly associated with the cognitive domains that are impaired in major depressive disorder (MDD), notably processing speed. Limited evidence explores the interactive effect of air pollution and the genetic risk of depression on cognition. This cross-sectional study aims to extend the research by specifically examining how this interaction influences depression-related cognitive impairment and resting-state brain function. Methods Eligible participants were 497 healthy adult volunteers (48.7% males, mean age 24.5) living in Beijing for at least 1 year and exposed to relatively high air pollution from the local community controlling for socioeconomic and genomic. Six months’ ambient air pollution exposures were assessed based on residential addresses using monthly averages of fine particulate matter with a diameter of less than or equal to 2.5 μm (PM2.5). A cross-sectional analysis was conducted using functional magnetic resonance imaging (fMRI) and cognitive performance assessments. The polygenic risk score (PRS) of MDD was used to estimate genetic susceptibility. Results Using a general linear model and partial least square regression, we observed a negative association between resting-state local connectivity in precuneus and PRS-by-PM2.5 interactive effect (PFWE = 0.028), indicating that PM2.5 exposure reduced the spontaneous activity in precuneus in individuals at high genetic risk for MDD. DNA methylation and gene expression of the SLC30A3 gene, responsible for maintaining zinc-glutamate homeostasis, was suggestively associated with this local connectivity. For the global functional connectivity, the polygenic risk for MDD augmented the neural impact of PM2.5 exposure, especially in the frontal-parietal and frontal-limbic regions of the default mode network (PFDR < 0.05). In those genetically predisposed to MDD, increased PM2.5 exposure positively correlated with resting-state functional connectivity between the left angular gyrus and left cuneus gyrus. This connectivity was negatively associated with processing speed. Conclusions Our cross-sectional study suggests that air pollution may be associated with an increased likelihood of cognitive impairment in individuals genetically predisposed to depression, potentially through alterations in the resting-state function of the occipitoparietal and default mode network.


Tracing neurodiverse disruptions underlying emotional episodic memory to diagnosis-specific network of emotional regulation in psychiatric disorders

June 2024

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47 Reads

Objective Emotional dysfunctions are prevalent across various psychiatric disorders, leading to diverse emotional problems. Disrupted emotional episodic memory is a prominent deficit and may underlie various affective symptoms in clinical phenotypes. However, diagnosis-specific of neurodiverse disruptions remain elusive. Methods We used task-based functional magnetic resonance imaging (fMRI) and a normative modelling framework to establish a reference for functional activation during emotional episodic memory, drawing from a large dataset of healthy individuals (n = 409). Individualized deviations from this reference were evaluated using a clinical dataset of 328 participants, which included 168 healthy controls and patients with major depressive disorder (MDD, n = 56), bipolar disorder (BD, n = 31), and schizophrenia (SZ, n = 73). Regional deviations were mapped to four large-scale emotional regulation networks and used to predict affective symptoms across different mental disorders. Results We constructed a verifiable normative model of functional activation during emotional episodic memory to parse clinical heterogeneity. Diagnosis-specific regional deviations were enriched in the non-overlapping large-scale emotional regulation networks: MDD showed enrichment in emotion regulation network related to emotion perception and generation, BD in cognitive appraisal and emotional reactivity, and SZ in working memory and response inhibition. Individualized deviations significantly predicted affective symptom in distinct disorder, and specific emotional regulation network showed maximum feature weight. Conclusions These findings have potential implications for the understanding of dissociable neuropathological patterns of affective symptoms and improving individualized clinical diagnosis and treatment in psychiatric disorders.


Fig. 1 Deletion of Trio in forebrain neural progenitors leads to DG hypoplasia at postnatal stages. A Trio mRNA expression in DG from Trio fl/fl mice and Trio fl/fl;Emx1-Cre mice at P4. Scale bars, 100 µm. B Trio protein expression in HIP from Trio fl/fl mice and Trio fl/fl;Emx1-Cre mice at P21. C Brain size of Trio fl/fl;Emx1-Cre mice was smaller at P21. Scale bars, 2 mm. D P21 coronal sections revealed abnormal morphology of DG in Trio fl/fl;Emx1-Cre mice. Scale bars, 500 µm. E Morphological
Fig. 4 Trio is crucial for neuron migration in postnatal DG development. A-C Tangential migration of IPCs was evaluated by calculating the relative percentage of Tbr2+ cells in the DG anlage based on the total number of IPCs that migrated from neuroepithelium at P0 (A), and the proportions of IPCs in three equal parts of SPZ at P0 (B) and P2 (C) (n = 3 WT; n = 3 cKO). Scale bars, 100 µm. D Distribution pattern of IPCs and postmitotic neurons in SPZ was evaluated at P4 by dividing SPZ into five equal parts and calculating the proportions of Tbr2 + and Prox1 + cells in each part respectively (n = 3; 3). Arrowheads indicated the ectopic distributed cells in Trio fl/fl;Emx1-Cre
Fig. 5 Similar but milder impairments were observed in postnatal DG of Trio fl/fl;Nex-Cre mice. A Brain size of Trio fl/fl;Nex1-Cre mice was smaller at P21. Scale bar, 2mm. B P21 coronal sections revealed abnormal morphology of DG in Trio fl/fl;Nex-Cre mice. Scale bars, 100 µm. C-D Morphological changes in Trio-deleted DGs at postnatal developing stages (C and D left) and the area of the DG decreased in different levels in Trio fl/fl;Nex-Cre DGs (D right) (n = 5 WT; n = 5
Dentate Gyrus Morphogenesis is Regulated by an Autism Risk Gene Trio Function in Granule Cells

June 2024

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35 Reads

Neuroscience Bulletin

Autism Spectrum Disorders (ASDs) are reported as a group of neurodevelopmental disorders. The structural changes of brain regions including the hippocampus were widely reported in autistic patients and mouse models with dysfunction of ASD risk genes, but the underlying mechanisms are not fully understood. Here, we report that deletion of Trio , a high-susceptibility gene of ASDs, causes a postnatal dentate gyrus (DG) hypoplasia with a zigzagged suprapyramidal blade, and the Trio -deficient mice display autism-like behaviors. The impaired morphogenesis of DG is mainly caused by disturbing the postnatal distribution of postmitotic granule cells (GCs), which further results in a migration deficit of neural progenitors. Furthermore, we reveal that Trio plays different roles in various excitatory neural cells by spatial transcriptomic sequencing, especially the role of regulating the migration of postmitotic GCs. In summary, our findings provide evidence of cellular mechanisms that Trio is involved in postnatal DG morphogenesis.


Dysfunction of synergy networks in SCZ. a) Statistically significant t‐statistic matrices displaying between‐group differences in synergistic and redundant interactions (NC−SCZ; 538 SCZ and 540 NC; unpaired two‐sided t‐test). The large t‐statistic values for synergistic interactions indicate significant reduction in synergy of the SCZ group. b) Scatter‐box chart comparing mean synergy between SCZ and NC groups across different sites. From left: PKU6 (p < 2.5 × 10⁻⁶), HLG (p < 5.9 × 10⁻⁴), XIAN (p < 2.5 × 10⁻³), XX_S (p < 1.2 × 10⁻²), XX_G (p < 7.9 × 10⁻³), WUHAN (p < 4.2 × 10⁻³), and ZMD (p < 7.9 × 10⁻³), unpaired two‐sided t‐test. Each colored circle represents one subject. The upper and lower boundaries of the box represent the first and third quartiles, while the median is indicated by the horizontal line inside the box. The lower and upper whiskers extend to 1.5 times the interquartile range. Synergy network dysfunction in the SCZ group was observed at all independent sites, despite the use of different scanners. c) Regional mean t‐statistic values for three types of interactions (synergy: mean = 3.83, s.d. = 1.8; redundancy: mean = 1.33, s.d. = 1.9; functional connection: mean = 1.13, s.d. = 1.9). *** denotes p < 0.001; unpaired two‐sided t‐test. d) Distinct resting‐state network profiles for regional synergy dysfunction. Each violin plot illustrates the synergy t‐statistic distribution of brain regions assigned to the indicated subnetwork on the x‐axis. The t‐statistic values of eight canonical resting‐state networks increase from low‐order sensorimotor cortices (VIS, SOM) to high‐order association cortices (FPN, DMN). e) Robustness of synergy t‐statistic map across different SCZ datasets. Significant correlations were observed between the results of multi‐site dataset and UCLA/COBRE datasets (UCLA, r = 0.48, pSA < 0.001; COBRE, r = 0.45, pSA < 0.001), indicating that the robustness of synergy dysfunction findings. Correlation analyses were performed using Pearson's correlation. p values were estimated using spatial autocorrelation (SA) preserving surrogate maps generated by BrainSMASH method.[³²]
Three synergy factors with distinct interaction patterns inferred by LDA model.[¹⁶] a) Whole‐brain synergistic interactions of both groups and normalization for SCZ. Synergy matrices for each individual with SCZ were normalized against the corresponding distribution in NC using z‐scores. b) Inference of three overarching synergy factors using LDA model. The model enables the extraction of latent factors characterized by mixed membership, based on the assumption that multiple latent factors exist in subjects with SCZ. Consequently, each participant's network organization of synergistic interactions was modeled as simultaneously influenced by multiple latent synergy factors. c) Factor‐specific synergistic interaction patterns. LDA model simultaneously estimated the corresponding synergy patterns associated with each factor, referred to as factor‐specific synergy patterns. d) Network‐level synergy patterns of three latent factors, computed by averaging the values of synergistic interactions within functional subnetworks.
Factor compositions and associations with participants’ characteristics. a) Factor compositions of SCZ in the multi‐site samples. Each dot corresponds to a participant, and its location in barycentric coordinates indicates this participant's factor composition. The corners of the triangle represent pure factors, and dots closer to the corners indicate a higher probability of the corresponding factor. Dots along the edge signify the co‐expression of two factors. b) Dissimilarity matrices of synergy z‐score and factors probability compared with dissimilarity based on different participants’ characteristics. Subject dissimilarity matrices were calculated using the Euclidean distance of variables between participants. Model fit was assessed using the Kendall rank correlation coefficient (Kendall τ). Red diamond represents the final estimate out of 100 random estimates. It was evident that the subject dissimilarity matrix obtained from factor expression loadings shows a significantly higher correlation with symptoms (PANSS), while being significantly less associated with variables (gender, age, site) common to both NC and SCZ participants. This highlighted the effectiveness of LDA in identifying symptom dimensions in the synergy interactions of SCZ. c) Forest plots for correlations of three PANSS subscale scores and three factor expression loadings, compared with the subject mean synergy. All the seven sites and COBRE dataset are included in each plot. The Pearson's correlations and their 95% confidence interval (CI) were reported. An overall correlation was calculated by merging all participants together. Significant overall correlations after FDR multiple comparison correction are highlighted with blue and purple boxes. The results indicate that factor 1 was correlated with positive PANSS subscale, while factor 3 was correlated with negative and general PANSS subscales.
Spatial correlates of dysfunction patterns summed across brain regions in three SCZ synergy factors. a) NeuroSynth term‐based meta‐analysis.[³⁰] Each factor was characterized by the top 20% of brain regions, revealing that the three factors corresponded to a wide and diverse range of cognitive topics. b) A parameterized mean‐field model (pMFM) was employed simulate functional dynamic signals and infer regional microcircuit parameters,[²⁰] specifically recurrent connection (W) and subcortical input (I). Differences in these two microcircuit parameters between individuals with SCZ and NC were related to the three factors to explore their neurodynamic mechanisms. Significant positive linear correlations between the W difference and factor 3, as well as the I difference and factor 2 were observed. Spatial Pearson's correlations were assessed using a SA permutation test.
Mapping Brain Synergy Dysfunction in Schizophrenia: Understanding Individual Differences and Underlying Molecular Mechanisms

June 2024

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221 Reads

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3 Citations

To elucidate the brain‐wide information interactions that vary and contribute to individual differences in schizophrenia (SCZ), an information‐resolved method is employed to construct individual synergistic and redundant interaction matrices based on regional pairwise BOLD time‐series from 538 SCZ and 540 normal controls (NC). This analysis reveals a stable pattern of regionally‐specific synergy dysfunction in SCZ. Furthermore, a hierarchical Bayesian model is applied to deconstruct the patterns of whole‐brain synergy dysfunction into three latent factors that explain symptom heterogeneity in SCZ. Factor 1 exhibits a significant positive correlation with Positive and Negative Syndrome Scale (PANSS) positive scores, while factor 3 demonstrates significant negative correlations with PANSS negative and general scores. By integrating the neuroimaging data with normative gene expression information, this study identifies that each of these three factors corresponded to a subset of the SCZ risk gene set. Finally, by combining data from NeuroSynth and open molecular imaging sources, along with a spatially heterogeneous mean‐field model, this study delineates three SCZ synergy factors corresponding to distinct symptom profiles and implicating unique cognitive, neurodynamic, and neurobiological mechanisms.


Fig. 4: Effects of previously implicated CNVs and joint effects of CNVs and SNVs on APD response. (a) Between-group comparisons on 6-week Positive and Negative Syndrome Scale (PANSS) reduction rate between previously implicated copy number variants (CNVs) carriers and noncarriers partitioned by CNV type. Any previously implicated CNV, schizophrenia-associated CNV (SCZ-CNV), and antipsychotic drug target gene-intersected CNV (Target-CNV) were showed. Error bar indicates standard deviation. No significant difference was found. (b-d) Boxplots on PANSS reduction rate between carriers of nominally significant Target-CNV and those noncarriers, (b) shows gains at 1q21.1 (P = 0.031), (c) shows losses at 10q23.33 intersected with CYP2C19 (P = 0.003), and (d) shows gains at Xq23 intersected with HTR2C (P = 0.010). (e) Top single nucleotide variations (SNVs) to calculate genetic risk score (GRS); (f) Significant interactive effects on 6-week PANSS reduction rate between CNVs passed FDR correction (FDR-CNV) and GRS (P interaction = 0.021). (g) Receiver operating curve for antipsychotic drug (APD) treatment response at 6 weeks, the area under curve (AUC) was 0.805 (95% CI: 0.781-0.828).
Contribution of copy number variants on antipsychotic treatment response in Han Chinese patients with schizophrenia

June 2024

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63 Reads

EBioMedicine

Background Response to antipsychotic drugs (APD) varies greatly among individuals and is affected by genetic factors. This study aims to demonstrate genome-wide associations between copy number variants (CNVs) and response to APD in patients with schizophrenia. Methods A total of 3030 patients of Han Chinese ethnicity randomly received APD (aripiprazole, olanzapine, quetiapine, risperidone, ziprasidone, haloperidol and perphenazine) treatment for six weeks. This study is a secondary data analysis. Percentage change on the Positive and Negative Syndrome Scale (PANSS) reduction was used to assess APD efficacy, and more than 50% change was considered as APD response. Associations between CNV burden, gene set, CNV loci and CNV break-point and APD efficacy were analysed. Findings Higher CNV losses burden decreased the odds of 6-week APD response (OR = 0.66 [0.44, 0.98]). CNV losses in synaptic pathway involved in neurotransmitters were associated with 2-week PANSS reduction rate. CNV involved in sialylation (1p31.1 losses) and cellular metabolism (19q13.32 gains) associated with 6-week PANSS reduction rate at genome-wide significant level. Additional 36 CNVs associated with PANSS factors improvement. The OR of protective CNVs for 6-week APD response was 3.10 (95% CI: 1.33–7.19) and risk CNVs was 8.47 (95% CI: 1.92–37.43). CNV interacted with genetic risk score on APD efficacy (Beta = −1.53, SE = 0.66, P = 0.021). The area under curve to differ 6-week APD response attained 80.45% (95% CI: 78.07%–82.82%). Interpretation Copy number variants contributed to poor APD efficacy and synaptic pathway involved in neurotransmitter was highlighted. Funding 10.13039/501100001809National Natural Science Foundation of China, 10.13039/501100012166National Key R&D Program of China, 10.13039/501100002858China Postdoctoral Science Foundation.


Exploring Schizophrenia Classification Through Multimodal MRI and Deep Graph Neural Networks: Unveiling Brain Region-Specific Weight Discrepancies and Their Association With Cell-Type Specific Transcriptomic Features

May 2024

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61 Reads

Schizophrenia Bulletin

Background and Hypothesis Schizophrenia (SZ) is a prevalent mental disorder that imposes significant health burdens. Diagnostic accuracy remains challenging due to clinical subjectivity. To address this issue, we explore magnetic resonance imaging (MRI) as a tool to enhance SZ diagnosis and provide objective references and biomarkers. Using deep learning with graph convolution, we represent MRI data as graphs, aligning with brain structure, and improving feature extraction, and classification. Integration of multiple modalities is expected to enhance classification. Study Design Our study enrolled 683 SZ patients and 606 healthy controls from 7 hospitals, collecting structural MRI and functional MRI data. Both data types were represented as graphs, processed by 2 graph attention networks, and fused for classification. Grad-CAM with graph convolution ensured interpretability, and partial least squares analyzed gene expression in brain regions. Study Results Our method excelled in the classification task, achieving 83.32% accuracy, 83.41% sensitivity, and 83.20% specificity in 10-fold cross-validation, surpassing traditional methods. And our multimodal approach outperformed unimodal methods. Grad-CAM identified potential brain biomarkers consistent with gene analysis and prior research. Conclusions Our study demonstrates the effectiveness of deep learning with graph attention networks, surpassing previous SZ diagnostic methods. Multimodal MRI’s superiority over unimodal MRI confirms our initial hypothesis. Identifying potential brain biomarkers alongside gene biomarkers holds promise for advancing objective SZ diagnosis and research in SZ.


Citations (74)


... Integrating extracellular matrix data with genetic and transcriptomic information provides a robust framework for exploring the underlying mechanisms of SZ. 188,[203][204][205][206] This approach enables researchers to investigate how genetic variations influence brain connectivity and to identify pathways through which genetic risk factors contribute to network dysfunction. Such integrative analyses hold significant potential for uncovering novel biomarkers and therapeutic targets, ultimately enhancing the precision of SZ diagnosis and treatment strategies. ...

Reference:

Bridging Neuroscience and Psychiatry through Brain Complexity
Mapping Brain Synergy Dysfunction in Schizophrenia: Understanding Individual Differences and Underlying Molecular Mechanisms

... Stonin 2 (STON2) gene encodes a protein crucial for intracellular transport processes, including clathrin-mediated endocytosis and vesicular trafficking. Though mainly recognized for its role in cellular transport, alterations in STON2 function can potentially contribute to neurodegenerative disorders (Luan et al., 2011;Ma et al., 2024;Mahapatra et al., 2023;Xu et al., 2018) and cancer (Mahapatra et al., 2023;Xu et al., 2018). Studies have found that the SNP rs2371597 in the STON2 gene is associated with an increased risk of developing KC and might influence cellular functions relevant to corneal structure and integrity. ...

STON2 variations are involved in synaptic dysfunction and schizophrenia-like behaviors by regulating Syt1 trafficking
  • Citing Article
  • February 2024

Science Bulletin

... Parents in laissez-faire parenting lack a sense of responsibility and are unable to take the initiative to care for and discipline their children. Haihua Jiang et al. also found that depressive traits were negatively correlated with good parenting styles and positively correlated with bad parenting styles [10]. To avoid suicidal behavior in high school students, parents should adjust their parenting style and intervene in high school students. ...

Effects of parenting styles on adult personality traits, depressive trait, and brain structure
  • Citing Article
  • February 2024

... GWAS are designed to identify genetic variants linked to specific diseases or traits by comparing allele frequencies between phenotypically different groups [35,83,84] . The method involves scanning the entire genome of numerous individuals to find SNPs that are more frequent in individuals with a particular disease compared to those without [84,85] . In GWAS, common genetic variations associated with certain illnesses are found by examining the genomes of large cohorts [86] . ...

Replication of previous autism-GWAS hits suggests the association between NAA1, SORCS3, and GSDME and autism in the Han Chinese population

Heliyon

... In the context of neurological disorders such as Alzheimer's disease and autism, there is a notable shift in miRNA expression profiles [50,51]. Jiang et al. identified an ASD-associated miRNA network that interacts with lncRNAs, including MIR600HG, to regulate gene expression, thereby influencing neural development and the pathogenesis of ASD [52]. These elements together form a sophisticated regulatory network that governs miRNA expression and function. ...

Integrative analysis of long noncoding RNAs dysregulation and synapse-associated ceRNA regulatory axes in autism

Translational Psychiatry

... Given that these SNPs are randomly assigned at conception and exert lifelong effects, MR can effectively circumvent the confounding bias inherent in traditional epidemiological studies [15,16]. Drawing on previous articles employing Mendelian randomization to study calcium homeostasis [17,18] and the availability of data in existing genome-wide association studies (GWASs) databases, our study selected calcium, 25(OH)D, and PTH as calcium homeostasis regulatory factors to address the following two key questions via MR analysis: (1) what is the association between calcium homeostasis regulatory factors and endometriosis; (2) what is the impact of calcium levels on different types of endometriosis. , and parathyroid hormone (PTH) in maintaining calcium homeostasis, involving the blood, small intestine, parathyroid glands, liver, bone, and kidney. ...

Calcium Homeostasis and Psychiatric Disorders: A Mendelian Randomization Study

... Interestingly, Rab5 was co-localized with GSK3α/β, and interfering with intracellular cargo transport by knocking down Rab5 increased GSK3α/β expression and reversed the AS-mediated GSK3α/β reduction, indicating that the GSK3α/β may be naturally secreted by the Rab5-positive vehicle. Given that drugs can induce alterations in protein conformation (Guo et al., 2022;Wang et al., 2023), we suggested that AS may induce GSK3α/β secretion through promoting GSK3α/β translocation to the Rab5-positive vesicles by conformational shifts in GSK3α/β protein. This intriguing possibility will be a focal point of our future investigations. ...

Preferential Regulation of Γ‐Secretase‐Mediated Cleavage of APP by Ganglioside GM1 Reveals a Potential Therapeutic Target for Alzheimer's Disease

... It also suggests that the three types of symptoms may correspond to different neurodynamic bases. Our model only focuses on cortical regions, and positive symptoms are suggested to be related to interactions between the cortical and subcortical regions [43], which may explain why mode 2 has lower significance in PLS regression compared to mode 1. mode 1 exhibits a brain gradient from the limbic to low-level and then to high-level networks, where the top three loading networks correspond to the triple network hypothesis [44], indicating that the triple network hypothesis may represent a pathological dimension of SCZ. ...

Neuroimaging and multiomics reveal cross-scale circuit abnormalities in schizophrenia
  • Citing Article
  • August 2023

Nature Mental Health

... Phosphodiesterase 2A (PDE2A) is a member of the phosphodiesterases (PDEs) superfamily (4). PDEs are a diverse group of enzymes that regulate cellular signaling by modulating cyclic nucleotide levels (5). PDE2A specifically hydrolyzes cyclic adenosine monophosphate (cAMP) and cyclic guanosine monophosphate (cGMP), thereby influencing important intracellular signaling pathways (6). ...

Phosphodiesterase and psychiatric disorders: a two-sample Mendelian randomization study

Journal of Translational Medicine

... Previous studies have suggested that the environment during childhood affects brain development [14]. Urban childhood was negatively correlated with the gray matter volume (GMV) of the MPFC in developed and developing countries [15,16], while positively correlated with the GMV of the dorsal lateral prefrontal cortex (DLPFC) only in developing countries [16]. Meanwhile, activation of the pregenual anterior cingulate cortex (pACC) in a social stress task was affected by childhood urbanicity [17] and interacts with polygenic risk score to affect brain activation under social-stress working memory task [18]. ...

The effects of environmental factors associated with childhood urbanicity on brain structure and cognition

BMC Psychiatry