Christie Yorke’s research while affiliated with University of California, Santa Barbara and other places

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Publications (3)


Author Correction: Heat stress analysis suggests a genetic basis for tolerance in Macrocystis pyrifera across developmental stages
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December 2024

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12 Reads

Communications Biology

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Correlation analysis reveals a correspondence between sporophytes out-planted in warm water conditions offshore Santa Barbara, CA, and their parental female gametophytes heat-stressed in ex situ conditions
Sporophytes were harvested in September 2019. The blue dotted lines show neutral response to heat stress (HST = 0), the red lines are linear regression between y- and x- axes. Gametophyte HST values plotted are averaged, normalized FI values from week 0-week 4 and correlated to sporophyte biomass. Correlations with P-values are placed on the top right corner (R and p, respectively).
Genetic diversity analysis reveals lower genetic variability in 18 heat stress-tolerant (HST) gametophytes in the context of 18 random gametophytes with the same population distribution
Each panel represents the sampling distribution of genetic diversity (average pairwise Identity-by-State, GenDiv, (Eq. 5)) from 50,000 permutations. The observed GenDiv in the selected 18 HST female gametophytes is indicated by the dashed lines and corresponding percentile values. The left panel is based on the MAF0 SNP dataset, which includes all SNPs, while the right panel uses the MAF5 SNP dataset, where SNPs with minor allele frequencies less than 0.05 were removed.
Fluorescence imaging of giant kelp gametophytes at Week 0 using the IVIS 3D tomography system
Only wells with visible red or yellow pixels contains a gametophyte. A 96-well plate containing the samples was positioned within the system with the imaging parameters set to emission 680 nm, excitation 500 nm, Epi-Illumination, Bin: (HR)4, FOV:13.2, F2, 2 s. Fluorescent intensity (FI) values were captured every 2 weeks over a period of four weeks, starting from Week 0, using LivingImage® software with a 12 × 8 grid. Data are presented in continuous fluorescent intensity units of [p/s] / [µW/cm²], allowing for the monitoring of changes in FI values per replicate throughout the thermal stress treatments.
Map of M. pyrifera sampling locations across the Southern California Bight and the farm location
This map illustrates each of the four sampling sites. The northernmost population of Arroyo Quemado has a 1–2 °C colder average SST compared to the southernmost population of Camp Pendleton, CA³⁹. The farm location is proximal to the Santa Barbara coastline and demarcated by a white circle. This distribution highlights the distinct sampling regions. Geographic distribution of the farm and sampling locations were marked using latitude and longitude coordinates. The R package “rnaturalearth” was employed to retrieve the base map, the R packages, “maps”, “sf”, “ggspatial”, and “tidyverse” were used to manipulate the spatial data and to plot the map.
Averaged temperature pattern on the farm between 05/03/2019 and 08/27/19
The red line is a smooth approximation representing the temperature trend. Temperature data, provided by HOBO data loggers, reveal average SST for the time that the juvenile sporophytes were grown at the farm from May through August 2019.
Heat stress analysis suggests a genetic basis for tolerance in Macrocystis pyrifera across developmental stages

September 2024

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132 Reads

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1 Citation

Communications Biology

Kelps are vital for marine ecosystems, yet the genetic diversity underlying their capacity to adapt to climate change remains unknown. In this study, we focused on the kelp Macrocystis pyrifera a species critical to coastal habitats. We developed a protocol to evaluate heat stress response in 204 Macrocystis pyrifera genotypes subjected to heat stress treatments ranging from 21 °C to 27 °C. Here we show that haploid gametophytes exhibiting a heat-stress tolerant (HST) phenotype also produced greater biomass as genetically similar diploid sporophytes in a warm-water ocean farm. HST was measured as chlorophyll autofluorescence per genotype, presented here as fluorescent intensity values. This correlation suggests a predictive relationship between the growth performance of the early microscopic gametophyte stage HST and the later macroscopic sporophyte stage, indicating the potential for selecting resilient kelp strains under warmer ocean temperatures. However, HST kelps showed reduced genetic variation, underscoring the importance of integrating heat tolerance genes into a broader genetic pool to maintain the adaptability of kelp populations in the face of climate change.


Consistency of Heat Stress Tolerance Across Life Stages in Macrocystis pyrifera

February 2024

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59 Reads

Kelps are vital for marine ecosystems, yet the genetic diversity underlying their capacity to adapt to climate change remains unknown. In this study, we focused on the kelp Macrocystis pyrifera ( M. pyrifera ), a species critical to coastal habitats. We developed a phenotyping protocol to evaluate heat stress response in 204 M. pyrifera gametophytes, subjected to heat stress treatments ranging from 21°C to 27°C. Here we show that genotypes exhibiting a heat-stress tolerant (HST) phenotype as haploid gametophytes also produced greater biomass as diploid sporophytes in a warm-water ocean farm. This correlation suggests a predictive relationship between early-stage HST and later-stage growth performance, indicating the potential for selecting resilient kelp strains under warmer ocean temperatures. However, HST kelps showed reduced genetic variation, underscoring the importance of integrating heat tolerance genes into a broader genetic pool to maintain the adaptability of kelp populations in the face of climate change.

Citations (1)


... To address the challenges posed by climate change and ensure the long-term success of restoration efforts, the recent literature on "futureproofing" restoration initiatives emphasizes the potential of using heat-tolerant kelp strains or selecting phenotypes with higher thermal resilience for out-planting. However, to effectively restore marine forests, the first critical step is to establish efficient nursery protocols that can support reforestation techniques, such as seeding on artificial substrates and out-planting of lab-reared juveniles [19,20]. These protocols are crucial not only for ensuring the successful growth of juvenile kelps but also for optimizing the entire restoration process and laying the groundwork for advanced approaches, reducing the time and expenses associated with cultivation [21,22]. ...

Reference:

Optimizing Early Growth of Laminaria hyperborea in Controlled Settings: A Pathway to Improved Restoration Efforts
Heat stress analysis suggests a genetic basis for tolerance in Macrocystis pyrifera across developmental stages

Communications Biology