Chantal Guihenneuc-Jouyaux's research while affiliated with Paris Descartes, CPSC and other places
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Publications (48)
SET is a multifunctional protein, but when present in the cytoplasm, acts as a powerful inhibitor of phosphatase 2A (PP2A). We previously observed that in CA1 of Down syndrome (DS) patients, the level of SET is increased, SET is translocated to the cytoplasm and associated with the hyperphosphorylation of tau at ser202/thr205. The presence of SET i...
For the years 2008–2013, particles of diameter <10 and 2.5 μm (PM10 and PM2.5, respectively), NOx, SO2, and O3 concentrations at urban, suburban, rural, and traffic sites in the Paris metropolitan area were analyzed. Strong spatial variability at traffic and rural sites and relatively uniform profiles at urban and suburban sites for PM10, PM2.5, an...
To account for the dynamic aspects of carcinogenesis, we propose a compartmental hidden Markov model in which each person is healthy, asymptomatically affected, diagnosed, or deceased. Our model is illustrated using the example of smoking-induced lung cancer.
The model was fitted on a case-control study nested in the European Prospective Investigat...
Caspase cleaved amyloid precursor protein (APPcc) and SET are increased and mislocalized in the neuronal cytoplasm in Alzheimer Disease (AD) brains. Translocated SET to the cytoplasm can induce tau hyperphosphorylation. To elucidate the putative relationships between mislocalized APPcc and SET, we studied their level and distribution in the hippoca...
Although formaldehyde is a common indoor pollutant, its impact on respiratory symptoms in childhood remains unclear. The aim of this study was to examine the relation between domestic formaldehyde exposure and occurrence of coughing, one of the most prevalent respiratory symptoms during the first year of life of infants from the PARIS birth cohort...
We consider the problem of combining opinions from different experts in an explicitly model-based way to construct a valid subjective prior in a Bayesian statistical approach. We propose a generic approach by considering a hierarchical model accounting for various sources of variation as well as accounting for potential dependence between experts....
The levels of molecules crucial for signal transduction processing change in the brain with aging. Lipid rafts are membrane microdomains involved in cell signaling. We describe here substantial biophysical and biochemical changes occurring within the rafts in hippocampus neurons from aging wild-type rats and mice. Using continuous sucrose density g...
Mechanisms of the Development of Allergy (MeDALL), a Seventh Framework Program European Union project, aims to generate novel knowledge on the mechanisms of initiation of allergy. Precise phenotypes of IgE-mediated allergic diseases will be defined in MeDALL. As part of MeDALL, a scientific seminar was held on January 24, 2011, to review current kn...
Since its introduction in the early 90’s, the idea of using importance sampling (IS) with Markov chain Monte Carlo (MCMC) has found many applications. This paper examines problems associated with its application to repeated evaluation of related posterior distributions with a particular focus on Bayesian model validation. We demonstrate that, in ce...
Certain chemical pollutants can exacerbate lower respiratory tract infections (LRIs), a common childhood ailment. Although formaldehyde (FA) is one of the most common air pollutants found in indoor environments, its impact on infant health is uncertain.
Our aim was to determine the impact of FA exposure on the LRI incidence during the first year of...
Dichlorodiphenyltrichloroethane (DDT) and polychlorinated biphenyls (PCBs) are persistent organochlorine compounds bioaccumulating in human tissues. Body burden of organochlorines may be influenced by individual characteristics such as age, weight variations, breastfeeding, dietary habits and place of residence.
To assess the current serum concentr...
Different treatments have been investigated in head and neck cancers (HNCs) but not all of them have been appraised using pairwise comparison. This has resulted in failure to directly identify the best treatment with standard methods. Mixed treatment comparison (MTC) meta-analysis allows one to perform simultaneous inference regarding all treatment...
In 1996, the discovery of variant Creutzfeldt-Jakob disease in the UK raised serious concerns about a large-scale epidemic. These concerns have been heightened by the recent discovery of people in Britain who were infected through blood transfusion. The outbreak of variant Creutzfeldt-Jakob disease in France emerged more recently with 23 cases obse...
Abstract: The Importance Sampling method is used as an alternative approach to MCMC in repeated Bayesian estimations. In the particular context of numerous data sets, MCMC algorithms have to be called on several times which may become computationally expensive. Since Importance Sampling requires a sample from a posteriodistribution, our idea is to...
Breast cancer is the most frequent neoplastic disease in women representing 50,000 new cases each year in France. The well-established risk factors, as those related to the reproductive history, cannot account for all cases of breast cancer. Other environmental or lifestyle factors need to be explored in depth. Persistent organochlorine compounds (...
The influence in spatial epidemiology of the seminar work on autocorrelation by Cliff and Ord is discussed. Quantifying the evidence of spatial clustering was an important step in the development of modern statistical methods for analyzing spatial variations of diseases. Autocorrelation is nowadays mostly accounted for at a latent level within a hi...
Ecological studies enable investigation of geographic variations in exposure to environmental variables, across groups, in
relation to health outcomes measured on a geographic scale. Such studies are subject to ecological biases, including pure
specification bias which arises when a nonlinear individual exposure-risk model is assumed to apply at th...
L'Importance Sampling combiné avec les algorithmes MCMC est proposée ici dans le cas d'estimations Bayésiennes répétées. Dans le cas particulier de nombreux jeux de données simulés sous le même modèle, l'algorithme MCMC doit être utilisé pour chaque jeu de données ce qui peut devenir coûteux en temps calcul. Puisque l'IS nécessite le choix d'une fo...
Thyroid cancer incidence in New Caledonia is the highest reported in the world and is approximately 10-fold higher than in most developed countries. We describe the incidence patterns in this country according to histological and sociodemographic characteristics to give clues about potential etiologic factors. Another objective is to see whether th...
Background
In the context of ecological studies, the Bayesian hierarchical Poisson model is of prime interest when studying the association between environmental exposure and rare diseases. However, adding spatially structured extra-variability in the model fitted to the data when such extra-variability does not exist conditionally on the covariate...
From August 1st to 20th, 2003, the mean maximum temperature in France exceeded the seasonal norm by 11-12 degrees C on nine consecutive days. A major increase in mortality was then observed, which main epidemiological features are described herein.
The number of deaths observed from August to November 2003 in France was compared to those expected o...
Qualitative validation consists in showing that a model is able to mimic available observed data. In population level biological models, the available data frequently represent a group status, such as pool testing, rather than the individual statuses. They are aggregated. Our objective was to explore an approach for qualitative validation of a mode...
Complex hierarchical models lead to a complicated likelihood and then, in a Bayesian analysis, to complicated posterior distributions. To obtain Bayes estimates such as the posterior mean or Bayesian confidence regions, it is therefore necessary to simulate the posterior distribution using a method such as an MCMC algorithm. These algorithms often...
Wet BVDSim (a stochastic simulation model) was developed to study the dynamics of the spread of the bovine viral-diarrhoea virus (BVDV) within a dairy herd. This model took into account herd-management factors (common in several countries), which influence BVDV spread. BVDSim was designed as a discrete-entity and discrete-event simulation model. It...
The spread of the Bovine Viral Diarrhoea Virus (BVDV) within a herd is influenced by the herd management. In dairy herds, animals are distributed into subgroups and this induces an heterogeneity in the probability of BVDV transmission. This paper presents a study of the influence of the level of separation between subgroups on the BVDV spread. A si...
Summary Complex hierarchical models lead to a complicated likelihood and then, in a Bayesian analysis, to complicated posterior distributions. To obtain Bayes estimates such as the posterior mean or Bayesian condence regions, it is therefore necessary to simu- late the posterior distribution using a method such as an MCMC algorithm. These algorithm...
La propagation du virus de la Diarrhée Virale Bovine (BVDV) dans un troupeau est influencée par la structure du troupeau. Dans les troupeaux laitiers en particulier, les animaux sont conduits en lots plus ou moins fortement séparés. Ceci induit une hétérogénéité de la probabilité de transmission du virus et pourrait conduire à accroître la variabil...
The perinatal prophylactic administration of zidovudine is associated with rapidly reversible macrocytic anemia in infants. However, a recent study suggests that there may be more persistent inhibition of hematopoïetic stem cells.
To study hematopoiesis in uninfected infants, born to HIV-1 seropositive mothers, including those exposed and those not...
Dans les troupeaux laitiers, les animaux sont séparés en lots selon leur âge et stade physiologique. La structuration d’une population en groupes peut modifier la transmission horizontale d’un agent infectieux en induisant une hétérogénéité de la probabilité de transmission du virus selon les contacts entre groupes. L’objectif de cet article est l’...
Multistate models have been increasingly used to model natural history of many diseases as well as to characterize the follow-up of patients under varied clinical protocols. This modeling allows describing disease evolution, estimating the transition rates, and evaluating the therapy effects on progression. In many cases, the staging is defined on...
This paper is centred on studies commonly known as ecological studies, where one seeks to estimate risks from data aggregated on a geographical basis. The aggregated nature of the data creates difficulties for interpreting, at an individual level, any ecological association found, difficulties which are generically referred to as 'the ecological bi...
This review paper aims at presenting the various convergence diagnostics available in the literature in a cohesive and conceptually consecutive manner. To this effect, we attempt classification according to several filters, as well as a description of a Web site, which aims at keeping track of the on-going research on the topic.
We show that continuous state-space Markov chains can be rigorously discretized into finite Markov chains. The idea is to subsample the continuous chain at renewal times related to small sets that control the discretization. Once a finite Markov chain is derived from the Markov chain Monte Carlo output, general convergence properties on finite stat...
Infection’ with Human Immunodeficiency Virus type-1 (HIV-1), the virus that leads to AIDS, is associated with a decline in
CD4 cell count, a type of white blood cell involved in the immune system. In order to monitor the health status and disease
progression of HIV infected patients, CD4 counts have thus been frequently used as a marker. In particu...
INTRODUCTION From 1st to 20th August, 2003, metropolitan France was exposed to a heat wave of unprecedented amplitude and duration. Almost 15000 excess deaths occurred during this period. Excess mortality clearly followed the heat wave period, established from 4 to August 13, with a national average maximum temperature close to 35°C. During this pe...
Citations
... Alteration to Mapt exon 10 splicing. Liu et al., 2008;Qian et al., 2013;Zhang et al., 2015;Dorard et al., 2016;Ahmed et al., 2017;García-Cerro et al., 2017;Yin et al., 2017;Chen et al., 2021 Aging dependant neuronal loss: Loss of basal forebrain cholinergic neurons in the MSN. Holtzman et al., 1996;Granholm et al., 2000;Hunter et al., 2003a,b;Seo and Isacson, 2005;Salehi et al., 2006Salehi et al., , 2009Lockrow et al., 2011b;Corrales et al., 2013 Neuroinflammation: Increased density of CD45+ microglia, decreased expression of homeostatic markers and increased levels of poinflammatory cytokines and ROS in aging dependant manner. ...
... is is because the atmospheric circulation processes influence the extent and direction of air mass transfer; hence, air pollutants are transported from one place to another [4]. Numerous studies have been conducted to identify air pollutant transport and trajectories over different regions of the world [23][24][25][26][27][28][29]. Yu et al. [30] used the HYSPLIT model to study the pollution characteristics of 29 cities in the Central Plains Economic Zone (CPEZ). ...
... Le modèle le plus récemment publié [BVDsim, Viet et al., 2004a] est un modèle stochastique de simulations dynamiques tenant compte des caractéristiques individuelles. Les auteurs ont mis en évidence l'influence de la structuration des troupeaux laitiers en lots sur la propagation du BVDV [Viet et al., 2004b]. Les animaux sont regroupés par statut d'infection vis-à-vis du BVDV (figure 2) : protégé par anticorps maternels (M), sensible (S), infecté transitoirement (T), guéri et immun (suivant le moment d'infection : hors gestation (R), en début (Ra), au milieu (Rb), ou en fin de gestation (Rc)), IPI (P). ...
... To view samples from the posterior and assess that the MCMC algorithm is behaving properly (Mengersen et al., 1999), we consider histograms and trace plots, respectively. Trace plots illustrate the entire sequence of samples from the posterior distribution, or chain, (after the first few thousand are discarded) with the value of the random variable plotted on the vertical axis vs. the sequence index. ...
... In neuronal cell lines, expression of SET results in abnormal hyperphosphorylation of tau at Thr231/Ser235, Ser262/356, and Ser396/404, which are sites known to inhibit binding of tau to microtubules (29). Interestingly, in the hippocampus of the temporal cortex of AD patients, SET was found accumulated in the cytosol and it co-localised with phosphorylated tau and cleaved amyloid precursor protein (APPcc)(6,124), suggesting that specific accumulation of SET in the cytosol could contribute to the pathogenesis of AD. This was proved by experiments performed by Qu et al. that, by using deletion mutants, showed that under genotoxic stress, targeted expression of SET to the cytoplasm induces cell death in cortical neurons(95). ...
... Identification of time-varying predictors of risk could provide insights into the dynamics of smoking-induced ALS. 24 Understanding these dynamics may inform hypotheses on the disease mechanism and will enhance insight into the aetiology of ALS. ...
... A number of articles discuss the computational difficulties associated with Bayesian cross-validation, e.g. Alqallaf and Gustafson (2001); Bhattacharya and Haslett (2007); Bornn et al. (2010); Lamnisos et al. (2012);McVinish et al. (2013); Vehtari et al. (2017). We first define the object of interest, before presenting our estimator. ...
... Illustrations of these techniques include state reduction methods, such as the lump process established by Kemeny and Snell [28] and the GTH elimination algorithm (proposed by Grassmann, Taksar, and Heyman) [29]. Methods for improving the performance of Markov chain approximations also include investigations into proper discretization of continuous Markov chain problems [30,31]. ...
... Still, achieving the latter criterion poses challenges on its own. Model parameters for which priors are needed might lack intuitive meaning for the domain expert, making it difficult to query the properties of these parameters directly (Albert et al., 2012). Moreover, the relationship between priors and the data may not be apparent from the model specification, especially for complex models, such as hierarchical models (da Silva et al., 2019). ...
... The hierarchical Bayes modeling has many applications in real life, such as medicine, biology, animal breeding, economics, and so on. In meta-analysis, several experiments about the same phenomenon undertaken at different places with different subjects and different protocols are pooled together (see [25,26]). ...