Chandra Shekhar Seth’s research while affiliated with University of Delhi and other places

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Publications (107)


High-affinity potassium transporter TaHAK1 implicates in cesium tolerance and phytoremediation
  • Article

December 2024

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39 Reads

Journal of Hazardous Materials

Jin Liu

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Shuai-Bo Chen

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Ze-Hua Fan

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[...]

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Ge-Zi Li

Cesium (Cs) is a toxic alkaline metal affecting human health. Plant high-affinity K transporters (HAKs) involved in Cs uptake and transport have been identified in several plants. However, the molecular regulatory mechanisms of Cs uptake and transport, and homeostasis between Cs and K by HAKs remain unknown. In this study, TaHAK1 was overexpressed in rice (TaHAK1-OEs) to evaluate Cs absorption capacity and the Cs and K homeostasis mechanisms. Results showed that TaHAK1 promoted seedling growth by fixing Cs in the root cell wall and modifying Cs distribution. Transcriptome and bioinformatics analyses revealed that 37,828 differentially expressed genes (DEGs) were significantly induced in TaHAK1-OEs, of which the pathways involved in cell wall biosynthesis and ion absorption transport were notably affected including genes, XTHs, CSLEs, HAKs, and ABCs. Moreover, under Cs-contaminated soil, TaHAK1-OEs exhibited improved Cs tolerance by decreasing Cs accumulation and increasing K content in different tissues, particularly in the grains, indicating that TaHAK1 acts as a candidate gene for screening genetic modification of Cs phytoremediation and developing low-Cs-accumulation rice varieties. This study provides new insights into the uptake and translocation of Cs and the homeostasis of Cs and K in plants, and also supplies new strategy to improve phytoremediation efficiency.


Biochar for Ameliorating Soil Fertility and Microbial Diversity: From Production to Action of the Black Gold
  • Literature Review
  • Full-text available

December 2024

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91 Reads

iScience

This article evaluated different production strategies, characteristics and applications of biochar for ameliorating soil fertility and microbial diversity. The biochar production techniques are evolving, indicating that newer methods (including hydrothermal and retort carbonization) operate with minimum temperatures, yet resulting in high yield with significant improvements in different properties, including heating value, oxygen functionality and carbon content, compared to the traditional methods. It has been found that the temperature, feedstock type and moisture content play critical roles in the fabrication process. The alkaline nature of biochar is attributed to surface functional groups and addresses soil acidity issues. The porous structure and oxygen-containing functional groups contribute to soil microbial adhesion, affecting soil health and nutrient availability, improving plant root morphology, photosynthetic pigments, enzyme activities, and growth even under salinity stress conditions. The review underscores the potential of biochar to address diverse agricultural challenges, emphasizing the need for further research and application-specific considerations.

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Sustainable management of rice by-products: Environmental challenges, industrial applications, and circular bio-economy innovations
Sustainable management of rice by-products: Environmental challenges, industrial applications, and circular bio-economy innovations

December 2024

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62 Reads

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1 Citation

Biocatalysis and Agricultural Biotechnology

The agricultural sector plays an essential role in both human and economic growth, offering sustenance, employment, income, raw materials, technological progress, and sustainability. The growing awareness of the necessity to enhance agricultural production is gaining attention, primarily driven by the imperative to adequately nourish the continuously expanding global population. Diverse agricultural practices are causing harmful environmental consequences, posing a significant risk to ecological stability through issues such as soil degradation, water pollution, habitat loss, and biodiversity decline. Timely and effective agricultural waste management has become essential for preventing adverse environmental and health impacts. Biomass from rice crop harvesting and processing has been found in abundance around the world. Because of the abundance of this biomass in nature, researchers are harnessing it for various objectives, including global energy requirements, while supporting environmental sustainability. Due to this rationale, within the frameworks of emerging sustainable and circular models, the prioritization of agricultural waste valorization has gained prominence as a pivotal strategy aimed at advancing sustainable management and circular economy. This review mainly emphasizes on the rice bio-waste, its environmental and health-related issues, policies to control stubble burning, reduce pollution in the air, and sustainable management of the bio-waste into wealth using different approaches worldwide. We also investigated the potential contribution of rice-by-products wastes to bioenergy production (bioethanol, biogas, and biofuel), enzymes, nanoparticles, construction materials, animal husbandry, bioplastics, and other value-added products. We recommend that proper management of rice by-products may produce innovative bio-ingredients and biodegradable materials, and enhance green growth and a circular bioeconomy.


Fig. 1 Process of phytoremediation in plant
Fig. 2 Types of phytoremediation processes
Fig. 3 Schematic representation of PCs mechanism of action within a plant cell. HM entered through the plasma membrane (ZIP) and formed HM-PC complex and phytochelatin synthase. Tonoplast acts as a channel for moving these complexes into the vacuole with the help of the P1B-ATPase transporter and ATP-binding cassette. H 2 O 2 is secreted in the presence of HMs that accelerate the GSH metabolic activities and further quicken the production of the flux of GSH to chelate the HM. NRAMP vacuole
Phytoremediation of heavy metal(loid)s with integral involvement of the endogenous metal-chelators: Present state-of-the-art and future prospect

November 2024

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63 Reads

Discover Environment

Heavy metals(loid)s (HMs) threaten ecosystems and human health worldwide. Organic and inorganic compounds of different HMs are released, converted, and accumulated in different environmental spheres, significantly polluting soil, water, and food chains. In recent times, ‘phytoremediation’ which can be scaled easily and may not demand as much technical oversight as traditional methods, is considered to be an environment-friendly and sustainable method of pollutant’ (including heavy metals) removal from contaminated soil and water, and therefore, is a better alternative compared to the capital and energy intensive conventional strategies. Phytoremediation is performed by the hyperaccumulator plants, which have an appreciable stress tolerance potential. Primarily, the hyperaccumulating plants absorb contaminants through the roots and translocate them to the aerial parts. Hyperaccumulators have certain genetic characteristics that can increase heavy metal absorption from soil and water. Phytochelatin, ATPase, and metallothionein facilitate this process. Phytochelatins are small peptides that help to prepare the cell for the uptake and detoxication of metals and metalloids at inter- and intracellular levels. They form stable complexes with metal(loid)s by chelation inside the cells and subsequent sequestration into vacuoles. Scientists are manipulating the genetics of hyperaccumulators in many ways to accelerate the process in specific periods. This review attempts to give a comprehensive account of the mechanism of phytochelatin action and prospects that hold the hidden truth and immense potential for accomplishing the phytoremediation of HMs from the contaminated soil environment.


Anti-diarrhoea properties of ethanol extract of Citrullus colocynthis fruit pulp: in vivo and in silico studies

October 2024

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84 Reads

Advances in Traditional Medicine

This study aimed to establish anti-diarrhoea agents, through in vivo and in silico molecular modelling from the phytoconstituents of Citrullus colocynthis ethanol fruit pulp extract (CCEFPE). The crystal structure of µ (mu) opioid and aquaporin 4 (AQP4) receptors were retrieved from the RCSB database, while the identified compounds from C. colocynthis ethanol fruit pulp extract were sequentially docked via Schrödinger suite. In CCEFPE in vivo anti-diarrhoea studies, control received distilled water (2 mL/kg, p.o.), diarrhoea was administered with castor oil or MgSO4 (2 mL/kg, p.o.), standard drug was administered 2 mg/kg, p.o. loperamide, while CCEFPE (50, 100 and 150 mg/kg, p.o.) was administered to the treated groups. Seven hit compounds out of which 54 displayed relatively higher free binding energy for mu opioid and AQP4. Swiss ADME predicted compounds 54 to be blood–brain impermeant, have low gastrointestinal absorption, strong druglike-ness, and safety profile among the hits. In the in vivo study, the onset of diarrhoea was significantly (p < 0.05) delayed by CCEFPE. A significant reduction (p < 0.05) in gastrointestinal motility, enteropooling and PGE2 in diarrhoea-induced groups was also observed after CCEFPE administration. Compound 54, even though it has drug-like properties, displayed a weak interaction with the receptor and hence can be structurally modified to an analogue of loperamide for a better ligand-receptor interaction while the in vivo studies confirmed the anti-diarrhoea activities of C. colocynthis ethanol fruit pulp extract.


The multifaceted role of different SnRK gene family members in regulating multiple abiotic stresses in plants

October 2024

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136 Reads

Physiologia Plantarum

Abiotic stresses are a major constraint for agricultural productivity and food security in today's era of climate change. Plants can experience different types of abiotic stresses, either individually or in combination. Sometimes, more than one stress event may occur simultaneously or one after another during the lifecycle of the plant. In general, key survival strategies for stress tolerance may differ from one stress to another. However, at the molecular level, evolutionarily conserved protein kinase SUCROSE NONFERMENTING 1 (SNF1)‐related protein kinase (SnRK) gene family members, comprising SnRK1, SnRK2, and SnRK3 gene families, play a key role in different types of stress and adaptive responses. SnRK gene family members can act as master regulators and regulate the central metabolism of plants, which determines the energy distribution in either survival or growth/developmental processes. The key mechanism of SnRK‐mediated regulation is associated with the phosphorylation of downstream genes, which either induces or dampens the function of target proteins. This may be crucial for maintaining differential morpho‐physiological and biochemical processes in plants, including potassium signalling, ROS homeostasis, sugar signalling, and energy homeostasis. Furthermore, phosphorylation sites associated with different targets were also reviewed, which showed that SnRK‐mediated phosphorylation of Serine and Threonine residues of the target protein is a site‐specific event, where the target consists of specific amino acid sequences, including RXXS/T, Serine–threonine rich regions, or AMPK/SNF1 types. Here, we review different classes of SnRK gene family members and their multifaceted roles in understanding the commonality of SnRK‐mediated responses to multiple abiotic stresses in plants.


Small chemical molecules regulating the phytohormone signalling alter the plant’s physiological processes to improve stress adaptation, growth and productivity

October 2024

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28 Reads

Physiology and Molecular Biology of Plants

Small chemical molecules are attractive agents for improving the plant processes associated with plant growth and stress tolerance. Recent advances in chemical biology and structure-assisted drug discovery approaches have opened up new avenues in plant biology to discover new drug-like molecules to improve plant processes for sustained food production. Several compounds targeting phytohormone biosynthesis or signalling cascades were designed to alter plant physiological mechanisms. Altering Abscisic acid synthesis and its signalling process can improve drought tolerance, and the processes targeted are reversible. Molecules targeting cytokinin, Auxin, and gibberellic acid regulate plant physiological processes and can potentially improve plant growth, biomass and productivity. The potential of molecules may be exploited as agrochemicals to enhance agricultural productivity. The discovery of small molecules provides new avenues to improve crop production in changing climatic conditions and the nutritional quality of foods. We present the rational combinations of small molecules with inhibitory and co-stimulatory effects and discuss future opportunities in this field.



Sodium stress-induced oxidative damage and antioxidant responses during grain filling in Indica rice

September 2024

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26 Reads

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1 Citation

Plant Cell Reports

Key message Sodium treatment caused the sodium ion accumulation at the milk stage of immature rice grains which in turn triggered the overproduction of reactive oxygen species and oxidative damage. The tolerant cultivar showed an enhanced antioxidative response and induced expressions of OsNHX and OsHKT ion-transporters. Abstract Sodium chloride-(NaCl) induced soil salinity is a major constraint hindering global rice production. Amongst its constituent ions, sodium (Na⁺) is known to be the main driver of toxicity under salt stress. The present investigation aims to measure the impacts of excess Na⁺ during rice grain filling using two Indica rice cultivars with opposite tolerances to salt (salt tolerant: Panvel-3, salt-sensitive: Sahyadri-3) mainly via oxidative and responsive antioxidative pathways. Plants were treated with Na⁺-specific treatments and NaCl with equimolar Na⁺ levels (100 mM) at the initiation of the reproductive phase. Stressed and control plants were harvested at three different grain-filling stages- early milk, milk, and dough and assessed for ion accumulation and oxidative damage/antioxidant responses under Na⁺ stress. Na⁺ toxicity triggered reactive oxygen species (ROS) production and upregulated the responsive enzymatic antioxidants. Na⁺ stress also increased the nitric oxide (NO) levels and the activity of nitrate reductase in immature grains. Differential expression levels of OsNHX and OsHKT transporters were observed in response to Na⁺ stress. Mature grains displayed a high accumulation of Na⁺ along with reduced K⁺ content and elevated Na⁺/K⁺ under high Na⁺ availability. The alterations in mature grains’ sugar, starch, and protein content were also observed in response to the Na⁺ stress. Overall, the salt-tolerant cultivar displayed higher antioxidant activities and a lower rate of ROS generation in response to the Na⁺ stress. Results suggested a link between Na⁺ accumulation, Na⁺-mediated stress responses via anti/-oxidant pathways, and the grain-filling process in both rice cultivars.


Life cycle of arbuscular mycorrhizal (AM) fungi and the different stages of arbuscular development
Diagrammatic illustration of the direct and mycorrhizal pathways for Pi and N uptake in AM symbiosis. This schematic illustrates nutrient uptake pathways in a colonized plant cell, highlighting direct and mycorrhizal routes. The mycorrhizal pathway involves external hyphae (ERM) and arbuscules, facilitating the transfer of inorganic phosphate (Pi), ammonium (NH4⁺), nitrite (NO2⁻), and amino acids/small peptides (AAs/SPs). It also details polyphosphate (Poly P) metabolism within fungal vacuoles, supporting long-distance nutrient transport to the plant. (Pi: insoluble phosphate; Arg: arginine; Gln: glutamine; Orn: ornithine; AMTs: NH4⁺ transporters; PTs: Pi transporters; NRTs: NO3⁻ transporters; IRM: intraradical mycelium; ERM: extraradical mycelium; GS/GOAT: glutamine synthetase—glutamate synthase; NR: nitrate reductase; NIR: nitrite reductase)
(A) Role of arbuscular mycorrhizal fungi (AMF) in association with several plant-mycorrhizal interaction methods. The illustration demonstrates the mutualistic interaction between a tree and AMF within the rhizosphere. AMF colonizes the root system, facilitating several benefits to the plant. These include enhanced systemic acquired resistance (SAR) and increased salicylic acid (SA) production, which bolster the plant's immune response. Additionally, AMF contributes to detoxification by regulating nutrient uptake and inhibiting the translocation of toxic elements, improves soil structure and nutrient retention through microbial decomposition, and supports bioremediation by enhancing the plant's resistance to heavy metal toxicity and promoting the accumulation of heavy metals in hyperaccumulators
Mechanism of arbuscular mycorrhizal fungi (AMF) in association in plant protection. The figure illustrates the interaction between mycorrhizal fungi and plant roots, emphasizing the induced resistance mechanisms. Mycorrhiza-induced resistance (MIR) activates the systemic acquired resistance (SAR) response and involves plant growth-promoting microorganisms (PGPMs). The recognition of cell wall degrading enzymes and effectors by receptor-like kinases (RLKs), triggers a defense signaling cascade mediated by salicylic acid (SA) and jasmonic acid (JA), ultimately leading to gene expression changes that confer disease resistance
Unlocking the Potential of Arbuscular Mycorrhizal Fungi: Exploring Role in Plant Growth Promotion, Nutrient Uptake Mechanisms, Biotic Stress Alleviation, and Sustaining Agricultural Production Systems

September 2024

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241 Reads

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5 Citations

Journal of Plant Growth Regulation

Arbuscular mycorrhizal fungi (AMF) are symbiotic organisms that form intimate relationships with host plants by developing intracellular structures called arbuscules within root cortical cells. They are vital to natural ecosystems, offering a range of ecological benefits. They enhance the uptake and transfer of essential nutrients, influence the composition of fungal and bacterial communities in the soil, and improve soil texture and structure. They also strengthen plant resilience by mitigating the effects of salinity, drought, extreme temperatures, pathogens, pests, and weeds. They support plant defense mechanisms through the production of antimicrobial compounds, induction of defense-related biomolecules, and activation of resistance genes. This article provides a thorough review of recent research on the interactions between plant nutrients and AMF. It explores key mechanisms in nutrient uptake, and examines the morphological, biochemical, and molecular changes in plants colonized by AMF. Additionally, the article discusses AMF's crucial role in alleviating biotic stress. By shedding light on these aspects, the review identifies research gaps and suggests future directions. Harnessing AMF's potential can reduce dependence on agrochemicals and promote a more sustainable agricultural system.


Citations (69)


... Apart from this, plants possess the property of producing secondary metabolites, compounds that are synthesized alongside primary metabolites. Secondary metabolites serve specific purposes, unlike essential primary metabolites like amino acids, proteins, carbohydrates, and lipids that support growth [38,39]. Millet grains can be stored for long period without spoilage. ...

Reference:

Perspectives of millets for nutritional properties, health benefits and food of the future: a review
Sustainable management of rice by-products: Environmental challenges, industrial applications, and circular bio-economy innovations
  • Citing Article
  • December 2024

Biocatalysis and Agricultural Biotechnology

... The RDA results indicate that phosphorus (P), boron (B), and copper (Cu) have significant impacts on the variance in AMF composition among the sampled sites, as denoted by their p-values below 0.05. These nutrients play essential roles in plant-mycorrhizal interactions, with phosphorus and copper crucial for fungal metabolic processes and symbiotic efficiency (Shi et al., 2023;Bhupenchandra et al., 2024). In contrast, iron (Fe) and sulfur (S) did not reach statistical significance, suggesting, according to Zheng et al. (2024), that their concentrations may not substantially influence AMF community structure. ...

Unlocking the Potential of Arbuscular Mycorrhizal Fungi: Exploring Role in Plant Growth Promotion, Nutrient Uptake Mechanisms, Biotic Stress Alleviation, and Sustaining Agricultural Production Systems

Journal of Plant Growth Regulation

... However, these water sources are often located near open dumpsites, raising concerns about contamination from indiscriminate waste disposal. Open dumpsites generate leachate containing decomposing organic matter, heavy metals, and hazardous pollutants that can seep into groundwater aquifers, potentially compromising water quality [3,4]. Contaminants such as heavy metals, including cadmium (Cd), arsenic (As), and lead (Pb), pose serious health risks due to their bioaccumulation in body tissues, despite their trace presence being essential for certain physiological functions [5,6,7]. ...

Critical review on toxic contaminants in surface water ecosystem: sources, monitoring, and its impact on human health

Environmental Science and Pollution Research

... and Bacillus spp. further enhances plant immunity by activating these critical signalling pathways and inducing defence related genes, bolstering the plant's resilience to fungal pathogens [133] BCAs also stimulate the expression of pathogenesis-related (PR) genes, such as PR1, thereby enhancing plant defences against infections. For example, Trichoderma spp. ...

Enhancing Plant Disease Resistance: Insights from Biocontrol Agent Strategies

Journal of Plant Growth Regulation

... The various ways that climate change is affecting agriculture, emphasising how extreme weather conditions including heat waves, water stress, storms, floods, and new pest infestations are reducing agricultural output. 1 The growing dependence of agricultural operations on digital technologies has raised awareness of data privacy and ownership. 2 Additionally, the digital divide-a discrepancy in farmers' access to and adoption of digital tools-can worsen inequality and impede the broad adoption of sustainable methods. ...

Climate change adaptation: Challenges for agricultural sustainability
  • Citing Article
  • August 2024

Plant Cell and Environment

... This highlights the complex interactions among NO, hydrogen sulfide (H 2 S), and antioxidant systems, which collectively improve plant responses to drought stress. Furthermore, Shankar et al. (2024) reviewed the intricate molecular networks of ROS and RNS signaling in Oryza spp. under challenging conditions to identify strategies for enhancing stress resistance and crop performance. ...

Deciphering molecular regulation of reactive oxygen species (ROS) and reactive nitrogen species (RNS) signalling networks in Oryza genus amid environmental stress

Plant Cell Reports

... Previous studies have extensively reported on the effects of M/NPs and GO exposure alone on plants [20,21]. However, our study is the first to systematically investigate the effects of mixed exposure to PSMPs/PSNPs and GO of plants, considering growth inhibition at the phenological level, oxidative stress response at the cellular level, and gene expression changes at the molecular level. ...

Micro and nanoplastics pollution: Sources, distribution, uptake in plants, toxicological effects, and innovative remediation strategies for environmental sustainability
  • Citing Article
  • June 2024

Plant Physiology and Biochemistry

... ZnONPs are popular due to their cost-effectiveness, ease of manufacture, chemical stability, and non-toxicity. Studies have shown ZnONPs as promising antifungal agents [14,15]. For instance, ZnONPs have demonstrated significant antifungal activity against Erythricium salmonicolor, a coffee crop pathogen, with nanoparticle sizes ranging from 20 to 45 nm at a concentration of 6 mmol L −1 [16]. ...

Polyalthia longifolia-mediated green synthesis of zinc oxide nanoparticles: characterization, photocatalytic and antifungal activities

... Additionally, utilizing the CRISPR/Cas9 system to silence VaBAM3 in grape calli paves the way for identifying further cold-resistant genes, which could support the development of grape varieties better suited to withstand cold stress. Kaya et al. (2024) discovered that single nucleotide polymorphisms (SNPs) enhance drought tolerance in tomatoes by regulating both the nitrosative and oxidative pathways. This highlights the complex interactions among NO, hydrogen sulfide (H 2 S), and antioxidant systems, which collectively improve plant responses to drought stress. ...

Sodium nitroprusside modulates oxidative and nitrosative processes in Lycopersicum esculentum L. under drought stress

Plant Cell Reports

... Polyphenols are a type of secondary metabolites that can be divided based on their structure into flavonoids and non-flavonoids, documented for their therapeutic effects and health benefit properties (Sun and Shahrajabian 2023;Lang et al. 2024). Among this class, compounds' hydroxyl groups act as free radical terminators and ROS scavengers, regulating the oxidative stress (Jain et al. 2024 (2019) and Kozłowska et al. (2022) reported that the phenolic content of different varieties of R. idaeus leaves ranged between 119.95 and 136.10 mg/100 g fresh weight, and 143.60 mg GAE/g of extract, respectively. However, it is noteworthy that Ponder and Hallmann (2019) presented a higher flavonoid content, ranging between 67.01 and 72.01 mg/ 100 g fresh weight, compared to our findings. ...

Analysis of Quantitative Phytochemical Content and Antioxidant Activity of Leaf, Stem, and Bark of Gymnosporia senegalensis (Lam.) Loes

Plants