Bo Lv’s research while affiliated with Beijing Institute of Technology and other places

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Publications (57)


Discover the Maze-like Pathway for Glabridin Biosynthesis
  • Preprint
  • File available

May 2025

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16 Reads

Zhen Zhang

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Wenqiang Li

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Fanze Meng

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Tailoring enzymes diversify plant metabolite scaffolds through complex, context-dependent modifications, generating maze-like biosynthetic networks that complicate metabolic pathway reconstruction. Here, we systematically deconstructed and reconstructed the biosynthetic network of glabridin, a valuable skin-whitening isoflavone from Glycyrrhiza. By integrating metabolic pathway mining with genome and 183 transcriptomes, we identified four functional routes among sixteen theoretical possibilities and uncovered a previously uncharacterized, ladder-like multi-route tailoring network. Reconstruction of such architecture in yeast revealed metabolic redundancy and interconnectivity confer unexpected robustness, enabling higher production efficiencies compared to a single-route design. Further modular engineering enabled the de novo biosynthesis of glabridin in yeast. Our work establishes a generalizable framework for reconstructing metabolic mazes and demonstrates that multi-route architectures can be harnessed to enhance the robustness and productivity of cell factories.

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Fermentation profiles of ASAGF58 and high-yield strain H2. a The process of mutant strain screening and validation. b Lethality rate and mutation rate of S. pogona. c Comparison of butenyl-spinosyn production in ASAGF58 and H2. d Comparison of glucose consumption between ASAGF58 and H2. e The biomass of ASAGF58 and H2
Transcription analysis of ASAGF58 and H2. a Comparative transcriptome analysis of the DEGs between ASAGF58 and H2. b-d Bubble plot of the significant pathways with KEGG enrichment of DEGs at 72, 120, and 192 h, respectively
The differences in pivotal metabolic pathways between H2 and ASAGF58 in the ribosome, oxidative phosphorylation, and purine metabolism pathways. The heatmap colors represent gene expression levels (Log2FC) for each sample, as indicated in the legend on the right. PRPP: phosphoribosyl pyrophosphate, PRA: 5-phosphoribosylamine, GAR: 5’-phosphoribosylglycinamide, FGAR: 5’-phosphoribosyl-N-formylglycinamide, FGAM: 2-(formamido)-N1-(5’-phosphoribosyl) acetamidine, AIR: aminoimidazole ribotide, CAIR: 1-(5-phospho-D-ribosyl)−5-amino-4-imidazolecarboxylate, SAICAR: 1-(5’-phosphoribosyl)−5-amino-4-(N-succinocarboxamide)-imidazole, AICAR: 1-(5’-phosphoribosyl)−5-amino-4-imidazolecarboxamide, FAICAR: 1-(5’-phosphoribosyl)−5-formamido-4-imidazolecarboxamide, IMP: inosine monophosphate, XMP: xanthosine monophosphate, GMP: guanosine monophosphate, GDP: guanosine diphosphate, GTP: gnosine 5’-triphosphate, AMP: adenosine monophosphate, ADP: adenosine 5’-diphosphate, ATP: adenosine 5’-triphosphate, purF: gutamine phosphoribosyl pyrophosphate amidotransferase, purD: phosphoribosylglycinamide synthetase, purN: phosphoribosylglycinamide formyltransferase, purS/L/Q: phosphoribosylformylglycinamidine synthase, purM: phosphoribosylaminoimidazole synthetase, purC: phosphoribosylaminoimidazole-succinocarboxamide synthetase, purB: adenylosuccinate lyase, purH: phosphoribosylaminoimidazolecarboxamide formyltransferase, guaB: IMP dehydrogenase, guaA: guanylate synthetase, gmk: guanylate kinase, adk: adenylate kinase, pyk: pyruvate kinase, hpt: hypoxanthine phosphoribosyltransferase, apt: adenine phosphoribosyltransferase, rpsA/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R2/S/T: 30S ribosomal protein, atpA/B/C/D/E/F/G/H: ATP synthase, sdhA/B/C/D: succinate dehydrogenase, nuoA/B/C/D/E/F/G/H/I/J/K/L/M/N: NADH dehydrogenase, cydA/B: cytochrome d oxidase subunit, cyoE: heme o synthase, qcrB/C: cytochrome c reductase, coxA/B/C: cytochrome c oxidase
The function validation of 20 transcriptional regulators. a Flowchart of the functional validation of transcriptional regulators. b The production of butenyl-spinosyn in transcriptional regulator overexpression strain
The effect of TF00350 on the growth and metabolism of S. pogona. a Comparison of butenyl-spinosyn production between ASAGF58 and RS00350. b Gene expression levels of the butenyl-spinosyn biosynthetic gene. busA/B/C/D/E: polyketide synthase, busJ: dehydrogenase, busM/L: cyclase, busF: [4 + 2]-carbocyclases, busG: rhamnosyltransferase, busH/I/K: O-methyl-transferase, busN: 3-ketoreductase, busO: 2,3-dehydratase, busP: forosamyltransferase, busQ: 3,4-dehydratase, busR: transaminase, busS: dimethyltransferase, epi: 3′5’-epimerase, gdh: NDP-glucose-dehydratase, gtt: NDP-glucose synthase, kre: 4’-ketoreductase. c Mycelial morphology comparison between ASAGF58 and RS00350 at 72 and 120 h. d Growth curve analysis and (e) Glucose consumption of ASAGF58 and RS00350

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The PurR family transcriptional regulator promotes butenyl-spinosyn production in Saccharopolyspora pogona

January 2025

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43 Reads

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1 Citation

Applied Microbiology and Biotechnology

Butenyl-spinosyn, derived from Saccharopolyspora pogona, is a broad-spectrum and effective bioinsecticide. However, the regulatory mechanism affecting butenyl-spinosyn synthesis has not been fully elucidated, which hindered the improvement of production. Here, a high-production strain S. pogona H2 was generated by Cobalt-60 γ-ray mutagenesis, which showed a 2.7-fold increase in production compared to the wild-type strain S. pogona ASAGF58. A comparative transcriptomic analysis between S. pogona ASAGF58 and H2 was performed to elucidate the high-production mechanism that more precursors and energy were used to synthesize of butenyl-spinosyn. Fortunately, a PurR family transcriptional regulator TF00350 was discovered. TF00350 overexpression strain RS00350 induced morphological differentiation and butenyl-spinosyn production, ultimately leading to a 5.5-fold increase in butenyl-spinosyn production (141.5 ± 1.03 mg/L). Through transcriptomics analysis, most genes related to purine metabolism pathway were downregulated, and the butenyl-spinosyn biosynthesis gene was upregulated by increasing the concentration of c-di-GMP and decreasing the concentration of c-di-AMP. These results provide valuable insights for further mining key regulators and improving butenyl-spinosyn production. Key points • A high production strain of S. pogona H2 was obtained by⁶⁰Co γ-ray mutagenesis. • Positive regulator TF00350 identified by transcriptomics, increasing butenyl-spinosyn production by 5.5-fold. • TF00350 regulated of butenyl-spinosyn production by second messengers.






Efficient production of 22(R)-hydroxycholesterol via combination optimization of Saccharomyces cerevisiae

July 2024

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41 Reads

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4 Citations

22(R)‐hydroxycholesterol (22(R)‐HCHO) is a crucial precursor of steroids biosynthesis with various biological functions. However, the production of 22(R)‐HCHO is expensive and unsustainable due to chemical synthesis and extraction from plants or animals. This study aimed to construct a microbial cell factory to efficiently produce 22(R)‐HCHO through systems metabolic engineering. First, we tested 7‐dehydrocholesterol reductase (Dhcr7s) and cholesterol C22‐hydroxylases from different sources in Saccharomyces cerevisiae , and the titer of 22(R)‐HCHO reached 128.30 mg L ⁻¹ in the engineered strain expressing Dhcr7 from Columba livia (ClDhcr7) and cholesterol 22‐hydroxylase from Veratrum californicum (VcCyp90b27). Subsequently, the 22(R)‐HCHO titer was significantly increased to 427.78 mg L ⁻¹ by optimizing the critical genes involved in 22(R)‐HCHO biosynthesis. Furthermore, hybrid diploids were constructed to balance cell growth and 22(R)‐HCHO production and to improve stress tolerance. Finally, the engineered strain produced 2.03 g L ⁻¹ of 22(R)‐HCHO in a 5‐L fermenter, representing the highest 22(R)‐HCHO titer reported to date in engineered microbial cell factories. The results of this study provide a foundation for further applications of 22(R)‐HCHO in various industrially valuable steroids.



Citations (35)


... pathway 23 . Since the acteoside biosynthesis shares a common upstream metabolic pathway with many other natural products, its upstream steps have been extensively studied and are nearly elucidated 24 . In the downstream pathway involving acyltransferase and glycosyltransferase catalytic, several enzyme genes associated with acteoside biosynthesis, such as HCT and UGT, have been identified through transcriptome analysis 25,26 . ...

Reference:

Chromosome-level genome assembly of an important ethnic medicinal plant Callicarpa nudiflora
Current Advances in Biosynthesis of Acteoside
  • Citing Article
  • May 2021

... modifications, the introduction of hydroxyl functional groups through hydroxylation serves as a prerequisite for glycosylation and methylation of certain aromatic compounds and plays a crucial role in their pharmacological activities [9,10]. Numerous studies have highlighted the exceptional bioactivities of hydroxylated aromatic compounds. ...

Oxidative modification of plant natural products and microbial manufacturing
  • Citing Article
  • April 2022

... A total of 51 fungal endophytes were isolated from four PhGproducing plants: Echinacea purpurea, Rehmannia glutinosa, Ligustrum lucidum, and Cistanche deserticola. The endophyte Simplicillium sinense EFF1, derived from Echinacea purpurea, demonstrated the capacity to de-rhamnose isoacteoside, resulting in the production of calceorioside B, a multifunctional PhG derivative [45]. Li et al. investigated the relationship between endophytic diversity and the metabolites produced across different tissues of Panax quinquefolius [46]. ...

A α-L-rhamnosidase from Echinacea purpurea endophyte Simplicillium sinense EFF1 and its application in production of Calceorioside B
  • Citing Article
  • May 2024

International Journal of Biological Macromolecules

... Then, heterologous terpenoid synthases catalyze the conversion of GPP, FPP, GGPP, 2,3-epoxy-squalene into diverse terpenoids. Various microorganisms have been successfully employed in the production of terpenoids, including Cyanobacteria [33], Escherichia coli [34], Saccharomyces cerevisiae [35], Kluyveromyces lactis [36], and Bacillus subtilis [37]. Among these, S. cerevisiae serves as model organisms for eukaryotic cells, with a fully sequenced genome and a wealth of genetic tools available for manipulation. ...

Self-controlled in silico gene knockdown strategies to enhance the sustainable production of heterologous terpenoid by Saccharomyces cerevisiae
  • Citing Article
  • April 2024

Metabolic Engineering

... 14 It is a common host for synthesizing various plant-derived triterpenoids including βamyrin, 15 ginsenosides 16 and oleanolic acid. 17 S. cerevisiae possesses a well-established pathway for the synthesis of 2,3-oxidosqualene, a key precursor for cucurbitadienol production. 18 Typically, overexpression of ERG genes (ERGs) in the pre squalene pathway effectively increases the supply of precursors. ...

Application of multiple strategies to enhance oleanolic acid biosynthesis by engineered Saccharomyces cerevisiae
  • Citing Article
  • April 2024

Bioresource Technology

... The efficiency and yield of microbial fermentation for nutraceutical production can be significantly improved through process optimization. Critical parameters such as pH, temperature, oxygen levels, and nutrient supply must be precisely controlled to ensure the optimal growth of microorganisms and the production of desired metabolites [158]. Modern fermentation processes now integrate advanced monitoring and control systems, such as Process Analytical Technology (PAT), which provides real-time monitoring of key fermentation parameters, allowing for dynamic adjustments to optimize the fermentation process [159]. ...

Current advances for omics-guided process optimization of microbial manufacturing

Bioresources and Bioprocessing

... Compartmentalization, a characteristic feature of eukaryotic cells, establishes microenvironments with distinct pH, ionic strength, or environmental polarity that promote optimal conditions for cellular biochemical reactions. [18] The membranebound organelles are formed with specific functions and biological processes. [19] The membrane-bound compartments such as nucleus, mitochondria, lysosome, vacuole, and peroxisome are formed with a boundary of phospholipid layers ( Figure 2A). ...

Designing Intracellular Compartments for Efficient Engineered Microbial Cell Factories
  • Citing Article
  • April 2023

ACS Synthetic Biology

... Metabolic pathways interact with each other, forming a complex metabolic network. Many studies have sought to elucidate regulation mechanisms and enhance production using advanced omics-based technologies [12][13][14][15][16]. ...

Exploring a High-Efficiency Genetic Transformation System for Engineering Saccharopolyspora pogona ASAGF58 To Improve Butenyl-Spinosyn Production
  • Citing Article
  • February 2023

ACS Agricultural Science & Technology

... The extensive use of organic solvents and reagents in chemical synthesis exacerbates environmental challenges, including issues with waste disposal due to hazardous substances and safety risks. Given the growing emphasis on green and sustainable development, there is a great interest to develop more environmentally friendly and economically viable production methods [12]. The adoption of eco-friendly and effective synthetic biology techniques for synthesizing and increasing the production of isoflavones can enhance their utilization in various fields, including medicine [11]. ...

High efficient production of plant flavonoids by microbial cell factories: Challenges and opportunities
  • Citing Article
  • January 2022

Metabolic Engineering

... These cells are classified into different types according to their functions and morphologies, such as type I (dark cells), type II (light cells), type III (intermediate cells), and type IV (basal cells) [33][34][35]. Taste receptors on cell membranes are a class of large transmembrane proteins, including the transmembrane heptahelical domain, the Venus Flytrap module (the ligand-binding locus), and the carboxy-terminal tail [36,37]. When these receptors interact with taste substances, they trigger an intracellular signaling cascade, causing the cell to release neurotransmitters. ...

Engineering of Saccharomyces cerevisiae for sensing sweetness
  • Citing Article
  • October 2021

Biochemical Engineering Journal