Benjamin W. van Ee’s research while affiliated with University of Puerto Rico System and other places

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Publications (17)


Astrocasia elenae (Phyllanthaceae), a New Species and a New Generic Record for El Salvador
  • Article

December 2024

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13 Reads

Caribbean Journal of Science

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José Gabriel Cerén López

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Benjamin W. Van Ee

Diversity of Aquatic Macroinvertebrates Associated with Bromeliaceae Plants in Jarabacoa, Dominican Republic
  • Article
  • Full-text available

October 2024

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44 Reads

Caribbean Journal of Science

Pedro María Alarcón-Elbal

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Jesús Confesor Durán Tiburcio

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[...]

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Benjamin W. van Ee
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Distinguishing and Employing Two Species of Fish in Assessment of Stream Quality

December 2023

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36 Reads

Ichthyology & Herpetology

Biotic indices (bioindicators) can be individual species, species groups, or communities of species used to assess habitat quality. But, to be used effectively, managers require basic information on species used as indicators, including species distribution, differentiation between similar species, and environmental conditions associated with species presence. We addressed these problems concurrently in two related species, the Mottled Sculpin (Cottus bairdii) and the Slimy Sculpin (Cottus cognatus), as habitat quality indicators in the Manistee River in Michigan, USA. We determined the abundance and distribution of these species and related their presence to concurrent in-stream measurements of temperature, dissolved oxygen, pH, conductivity, turbidity, and stream quality score based on macroin-vertebrate diversity. Cladistic analyses of CO1 supported recognition of Mottled Sculpin and Slimy Sculpin as distinct species and confirmed initial field identification to species using morphological characteristics. Both species were most abundant in headwater regions, decreased downstream, and were sympatric at 5 of 12 (42%) locations. Mottled Sculpin were associated with lower conductivity, pH, and stream quality scores. Slimy Sculpin were associated with higher levels of DO and lower levels of turbidity. As a management indicator species of the US Forest Service, Mottled Sculpin alone may be ineffective as a habitat quality indicator, but concurrent use of Mottled Sculpin and Slimy Sculpin as a related-species complex might allow sufficient coverage to permit assessment of stream quality if species-specific differences in environmental tolerances are precisely determined.




Sculpin haplotypes recovered, including the number of individuals of each 298 haplotype and the sites at which they were found. The numbers in square brackets in the 299 Haplotype column are the GenBank accession numbers.
Sculpin species and haplotypes represented at the collection sites. Sites C-38 302 through County Rd 612 were on the north branch of the Manistee River and are arranged in the 303 table from upstream to downstream. Sites M-72 through North Sharon Road were on the main 304 branch of the Manistee River, and are also arranged from upstream to downstream.
Distinguishing and employing sister species of fish in assessment of stream quality

August 2021

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46 Reads

Biological indicators (bioindicators) can be individual species or species groups used to assess habitat quality. Unfortunately, conservationists often lack information on species distribution, how to differentiate between similar species, and environmental conditions associated with the presence of a species. We addressed these problems using two “sister” species of fish, the Mottled Sculpin (Cottus bairdii) and the Slimy Sculpin (Cottus cognatus), as stream quality indicators in the Manistee River watershed in the Huron-Manistee National Forests in Michigan, USA. We determined the abundance and distribution of these species and related their presence to concurrent in-stream measurements of temperature, dissolved oxygen, pH, conductivity, turbidity, and stream quality score based on macroinvertebrate diversity. To be certain of identification, we sequenced the Cytochrome c Oxidase Subunit I (CO1) molecular marker for specimens and used it as a DNA barcode to determine a specimen’s species. Cladistic analyses of CO1 unambiguously supported recognition of Mottled Sculpin and Slimy Sculpin as distinct species, confirming initial 87.5% correct identification using morphological characteristics, with uncertainty limited to juvenile fish. Field determinations increased to 100% correct identification as investigators gained more experience. Both species were most abundant in headwater regions, decreased downstream, and were sympatric at several locations. Mottled Sculpin were more likely to be found at stream locations with lower conductivity, pH, and stream quality scores, whereas Slimy Sculpin presence was more strongly associated higher levels of DO and lower levels of turbidity. Such findings are important because Mottled Sculpin are a designated management indicator species of the US Forest Service in the Huron-Manistee National Forests, but may be ineffective as a habitat quality indicator when used alone. Concurrent use of Mottled Sculpin and Slimy Sculpin as a management indicator sister-species complex could allow sufficient landscape coverage to permit habitat assessment if species-specific differences in environmental tolerances are precisely determined.


The Neotropical Croton sect. Geiseleria (Euphorbiaceae): Classification Update, Phylogenetic Framework, and Seven New Species from South America

July 2021

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311 Reads

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20 Citations

Annals of the Missouri Botanical Garden

A revised assessment of Croton L. sect. Geiseleria (A. Gray) Baill. is provided. The section as now circumscribed includes 84 species ranging across warm areas of the Americas. A nuclear ITS phylogeny of 150 accessions from 83 species and a chloroplast trnL-F phylogeny of 89 accessions from 65 species were generated to confirm correct phylogenetic placement of the species and to determine if any species previously included in the section should now be excluded. Seven new species are described, and we present a taxonomic synopsis that lists all currently accepted species along with their synonyms, distributions, and pertinent comments. We also recognize four subsections within Croton sect. Geiseleria and list their corresponding species. Based on both morphological and molecular criteria, we now recognize C. lagunillae Croizat as a distinct species, rather than as a variety of C. guildingii Griseb. (now treated as C. suavis Kunth), and we treat C. ramillatus Croizat var. magniglandulifer V. W. Steinm. as a species, C. magniglandulifer (V. W. Steinm.) B. W. van Ee. We also exclude C. tetradenius Baill. from Croton sect. Geiseleria (A. Gray) Baill. along with related species such as C. pulegiodorus Baill. and C. leptobotryus Müll. Arg., which are either members of Croton sect. Adenophylli Griseb. or else may merit new sectional status. We also exclude C. waltherioides Urb., although it is not clear to which section of Croton it belongs.


fig. 1. Seed germination from fruits of Pilosocereus royenii that are uninfested (and healthy), lightly infested, and severely infested by Hypogeococcus sp. and from fruits growing on tumors caused by Hypogeococcus sp. A. Average cumulative percentage of germinated seeds per plant by observation day. B. Seed germination rates expressed as number of new seedlings between sampling intervals; negative numbers indicate higher seedling mortality compared to germination (or negative germination rate), positive numbers indicate a net germination rate growth, and 0's represent no net growth in the number of seedlings (either there was no mortality and no germination, or they cancel each other).
Contrasting Effects of the Invasive Hypogeococcus sp. (Hemiptera: Pseudococcidae) Infestation on Seed Germination of Pilosocereus royenii (Cactaceae), a Puerto Rican Native Cactus

September 2020

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161 Reads

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2 Citations

Caribbean Journal of Science

We evaluated the impact of the Harrisia Cactus Mealybug (HCM), Hypogeococcus sp. (Hemiptera: Pseudococcidae), on seed germination of Pilosocereus royenii (Cactaceae) in Puerto Rico. Mature fruits were collected from individuals of P. royenii at various levels of HCM infestation, ranging from completely healthy plants to fruits growing directly on HCM-induced tumors. We hypothesized that germination will be directly and negatively affected by HCM infestation severity. After measuring germination and seedling survival for 160 days, we observed that seeds from fruits growing on tumors had the lowest germination rate compared to the other categories, as hypothesized. In addition, lightly infested plants germinated at a lesser rate compared to healthy plants, while seeds from severely infested plants germinated at a greater rate, contrasting with our hypothesis. We suggest that when the infestation is light, the host might be reallocating resources towards developing defensive responses. In contrast, when the infestation is severe, the host might be reallocating resources toward increasing germination.


Fig. 2. Croton kinondonesis G.W.Hu, V.M.Ngumbau & Q.F.Wang. A. Habit. B. Branch showing leaf arrangement. C. Adaxial side of leaf blade. D. Abaxial side of leaf blade. E. Black stellate trichomes. F. Inflorescence with pistillate flowers. G. Staminate flower. H. Inflorescence with staminate flowers. I. (i) Stipitate acropetiolar glands. (ii) Domatium. (iii) Axillary stipitate glands. J. (i) Orange latex. K. Inflorescence with both pistillate and staminate flowers. Scale bars: C-D 5 2 cm, G 5 2 mm, K 5 0.5 mm. Photos by G. W. Hu and V. M. Ngumbau.
Fig. 3. Location of the Kaya Kinondo Forest in coastal Kenya, the only known locality of Croton kinondoensis. Madagascar and the Comoros Archipelago are also indicated, which is where the related species of the Adenophorus Group occur. We acknowledge use of the base map provided by d-maps.com (https://d-maps.com/carte.php?num_car5739&lang5en).
A New Species of Croton (Euphorbiaceae) from a Madagascan Lineage Discovered in Coastal Kenya

May 2020

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1,020 Reads

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17 Citations

Systematic Botany

Croton kinondoensis, a new species from Kenya, is described and illustrated here with photographs. It is found in the sacred Kaya Kinondo Forest, one of the last remaining coastal forests patches in Kenya. Its morphology and systematic position based on ITS and trnL-F DNA sequence data clearly place it within the Adenophorus Group of Croton, a clade of ca. 15 species otherwise known only from Madagascar and the Comoros Archipelago. Its closest affinities appear to lie with Croton mayottae, from the island of Mayotte, and C. menabeensis, from northwestern Madagascar. This new species likely represents an independent dispersal of Croton from Madagascar to mainland Africa.



Citations (7)


... Even if no specific monitoring plots have been established, many studies have generated DNA barcode libraries for specific habitats [47], plant communities [48], or regional taxa [49][50][51] and are thereby expanding the global plant genetic library. Individual taxonomists are also generating DNA barcodes for specific groups of plants as either standard markers (e.g., [52][53][54][55]) or as an offshoot of their basic molecular phylogenetic investigations aimed at understanding evolutionary relationships. Preserved museum specimens can also be used to generate DNA barcodes [56]. ...

Reference:

The Expanding Role of DNA Barcodes: Indispensable Tools for Ecology, Evolution, and Conservation
DNA Barcoding of Adiantum (Pteridaceae: Vittarioideae) in Puerto Rico
  • Citing Article
  • December 2021

Caribbean Journal of Science

... Overall, our sampling covered 195 species in 27 Croton sections or clades (Supporting Information, Appendix S1). Clades and sections follow the most current phylogenetic framework of Van Ee et al. (2011) and recent updates (Riina et al., 2018(Riina et al., , 2021Van Ee and Berry, 2021). There are a few groups in Croton not yet recognized formally as sections, for which we used informal clade names. ...

Taxonomy of Croton flavens (Euphorbiaceae), a Caribbean Endemic, and a Preliminary Subsectional Classification of Croton section Adenophylli
  • Citing Article
  • December 2021

Caribbean Journal of Science

... The nuclear ribosomal internal transcribed spacer (ITS) region, and the plastid intergenic spacer trnL-trnF (hereafter called trnL-F ) were amplified using the PCR settings of Masa-Iranzo et al. (2021) and sent to Macrogen (Macrogen, Madrid) for sequencing. Primers and references are given in Riina & Cordeiro (2020) trnL-Fc CGAAATCGGTAGACGCTACG Taberlet et al. (1991) trnL-Fd GGGGATAGAGGGACTTGAAC Taberlet et al. (1991) trnL-Fe GGTTCAAGTCCCTCTATCCC Taberlet et al. (1991) trnL-Ff ATI' TGAACTGGTGACACGAG Taberlet et al. (1991) proven to be informative in previous studies of Croton (e.g., Van Ee, Riina & Berry, 2011;Masa-Iranzo et al., 2021;Riina et al., 2021). Sequences were assembled and aligned with MAFFT (default parameters), followed by manual editing in Unipro UGENE (Okonechnikov et al., 2012). ...

The Neotropical Croton sect. Geiseleria (Euphorbiaceae): Classification Update, Phylogenetic Framework, and Seven New Species from South America

Annals of the Missouri Botanical Garden

... Bridson (Rubiaceae, Bridson 1994) and a species of Uvariodendron (Dagallier et al. 2021) are all endemic to one to two other Kaya forests. The Croton is especially interesting as its affinities are with species of Madagascar rather than continental Africa (Ngumbau et al. 2020). ...

A New Species of Croton (Euphorbiaceae) from a Madagascan Lineage Discovered in Coastal Kenya

Systematic Botany

... Host preference and host use are difficult to determine for many of these species because they can be hard to find when not flowering, owing to many of these parasitic plants residing mostly within the host root tissue existing as endoparasites, making them virtually impossible to easily find (Thorogood and Hiscock 2007;Pelser et al. 2019; Rios-Carrasco and Vázquez-Santana 2021; Teixeira-Costa and Suetsugu 2023). However, for some species such as Pilostyles (Apodanthaceae), the use of RSFs could be possible. ...

A phylogenetic and biogeographic study of Rafflesia (Rafflesiaceae) in the Philippines: Limited dispersal and high island endemism
  • Citing Article
  • July 2019

Molecular Phylogenetics and Evolution

... The genus Croton (Euphorbiaceae family), with approximately 1300 species of herbs, shrubs, and trees, is one of the largest genera of flowering plants and is mainly distributed in both tropical and subtropical regions of Africa, America, and Asia (Berry et al., 2005;Riina et al., 2010). Croton sylvaticus Hochst. ...

Sectional rearrangement of arborescent clades of Croton (Euphorbiaceae) in South America: Evolution of arillate seeds and a new species, Croton domatifer

Taxon

... However, documented examples of such events are scarcely found in the literature. Some notable exceptions include Dombeyoideae (Malvaceae s.l.) with at least five migrations back to the continent (Skema et al. 2023), the Coffeeae and Psychotrieae alliances (Rubiaceae, Kainulainen et al. 2017;Razafimandimbison et al. 2017), Croton (Euphorbiacee, Haber et al. 2017) and grammitid ferns (Bauret et al. 2017). Here, we inferred at least one potential backcolonization from Madagascar to continental Africa in Helichrysum, involving H. silvaticum, which occurs in the Indian Ocean Coastal Forest Belt (area C, in Mozambique and South Africa). ...

Phylogenetic relationships of a major diversification of Croton (Euphorbiaceae) in the western Indian Ocean region
  • Citing Article
  • April 2017

Botanical Journal of the Linnean Society