Austin Z. T. Allison’s research while affiliated with Colorado State University and other places

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Publications (6)


Biologging in a free-ranging mammal reveals apparent energetic trade-offs among physiological and behavioural components of the acute-phase response
  • Article
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December 2024

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51 Reads

Austin Z T Allison

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The acute-phase response (APR) is an adaptive emergency life-history stage, wherein vertebrates exhibit fever and anorexia to survive an infection. However, induced immune responses are energetically costly, and sick animals may reduce physical activity to compensate. Tests of this predicted energetic trade-off in free-ranging animals are rare due to difficulties in measuring individual physiology and behaviour under immune challenge in natural settings. However, recent advances in biologging technology now make such studies possible. We surgically implanted heart rate/temperature loggers in free-ranging adult male Arctic ground squirrels, fitted the squirrels with collar-mounted accelerometers and light/temperature loggers, and injected animals with lipopolysaccharide (LPS) to simulate an immune challenge. LPS-injected squirrels exhibited approximately 1°C overnight fevers accompanied by slightly elevated (10 bpm) heart rates; LPS-injected squirrels also spent 19% less of their time aboveground the following day and reduced overall movement by 40% compared with saline-injected controls. Thus, we found support for an energetic trade-off between functional immune responses (fever and anorexia) and lethargic sickness behaviour within the APR of a free-ranging mammal. Moreover, our results suggest animal-borne devices can play an important role in future studies of vertebrate immunity and disease dynamics.

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Model selection table for generalized linear mixed effects candidate models constructed to explain variation in whether free-ranging adult northern Idaho ground squirrels reentered torpor or terminated hibernation after initial spring emergence
Estimates of b for predictor variables included in the top generalized linear mixed effects model designed to explain variation in whether free-ranging adult northern Idaho ground squirrels reentered torpor or terminated hibernation following initial spring emergence
Hit Snooze: An Imperiled Hibernator Assesses Spring Snow Conditions to Decide Whether to Terminate Hibernation or Reenter Torpor

January 2024

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38 Reads

Austin Z. T. Allison

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Alice E. Morris

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Jon A. Almack

Annual capture locations of adult northern Idaho ground squirrels (yellow) and Columbian ground squirrels (blue) at a single study site from 2013 to 2021. The trapping plot is outlined in white.
Monthly (30‐day time step) survival probability (±95% CI) of northern Idaho ground squirrels (NIDGS; n = 1689) was influenced by (a) conspecific density, (b) Columbian ground squirrel (COGS) density, and (c) winter snowfall (1 December–31 March). Survival estimates are predictions from the top Cormack–Jolly–Seber model designed to explain variation in survival probability that included a significant effect (α = 0.05) of a given covariate.
Monthly (30‐day time step) survival probability (±95% CI) of Columbian ground squirrels (COGS; n = 1291) was influenced by (a) winter snowfall (1 December–31 March) and (b) mean daily hibernation season temperature (1 August–31 March). Survival estimates are predictions from the top Cormack–Jolly–Seber model designed to explain variation in survival probability that included a significant effect (α = 0.05) of a given covariate.
Monthly (30‐day time step) survival probability (±95% CI) of northern Idaho ground squirrels (NIDGS; n = 1689) was influenced by Columbian ground squirrel (COGS) density, and the relationship varied with active‐season precipitation (1 April–31 July). The figure depicts only the survival probability estimates for adult females for simplicity; the interactive effect of Columbian ground squirrel density and active‐season precipitation on northern Idaho ground squirrel survival probability was the same across age‐sex classes, and the effects of age and sex were additive. High and low precipitation levels correspond to range extremes in annual site‐level active‐season precipitation documented during the study. Survival estimates are predictions from the top Cormack–Jolly–Seber model designed to explain variation in survival probability that included a significant effect (α = 0.05) of the two‐way interaction between Columbian ground squirrel density and active‐season precipitation.
Monthly (30‐day time step) survival probability (±95% CI) of (a) northern Idaho ground squirrels (NIDGS; n = 1689) and (b) Columbian ground squirrels (COGS; n = 1291) varied by sex, age class, and season. Survival estimates are predictions from the top Cormack–Jolly–Seber model designed to explain variation in survival probability that included significant (α = 0.05) effects of sex, age class, and season.
Weather influences survival probability in two coexisting mammals directly and indirectly via competitive asymmetry

December 2023

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88 Reads

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2 Citations

Ecologists have studied the role of interspecific competition in structuring ecological communities for decades. Differential weather effects on animal competitors may be a particularly important factor contributing to the outcome of competitive interactions, though few studies have tested this hypothesis in free‐ranging animals. Specifically, weather might influence competitive dynamics by altering competitor densities and/or per‐capita competitive effects on demographic vital rates. We used a 9‐year data set of marked individuals to test for direct and interactive effects of weather and competitor density on survival probability in two coexisting mammalian congeners: Columbian ground squirrels (Urocitellus columbianus) and northern Idaho ground squirrels (Urocitellus brunneus). Ambient temperature and precipitation influenced survival probability in both species, but the effects of weather differed between the two species. Moreover, density of the larger Columbian ground squirrel negatively impacted survival probability in the smaller northern Idaho ground squirrel (but not vice versa), and the strength of the negative effect was exacerbated by precipitation. That is, cooler, wetter conditions benefited the larger competitor to the detriment of the smaller species. Our results suggest weather‐driven environmental variation influences the competitive equilibrium between ecologically similar mammals of differential body size. Whether future climate change leads to the competitive exclusion of either species will likely depend on the mechanism(s) explaining the coexistence of these competing species. Divergent body size and, hence, differences in thermal tolerance and giving up densities offer potential explanations for the weather‐dependent competitive asymmetry we documented, especially if the larger species competitively excludes the smaller species from habitat patches of shared preference via interference.


Sex and age class influenced northern Idaho ground squirrel hibernation (a) immergence date (Julian day), (b) emergence date (Julian day) and (c) duration (number of days), providing support for the predation avoidance and sexual selection hypotheses. Sample sizes are included above 95% CI. Marginal effects were derived from the top linear mixed‐effects models designed to explain intraspecific variation in each response variable (i.e. the three hibernation behaviours).
Summer body condition (a) and average snowmelt date (b) influenced northern Idaho ground squirrel hibernation immergence date (Julian day; ±95% CI), providing support for the predation avoidance and food limitation hypotheses. X‐axes display standardized values. Points are raw immergence dates for individual squirrels. Marginal effects were derived from the top linear mixed‐effects model designed to explain intraspecific variation in immergence timing.
Summer body condition (a), expected peak NDVI (b) and spring temperature (c), influenced northern Idaho ground squirrel hibernation duration (number of days; ±95% CI), providing support for the predation avoidance, food limitation and thermal tolerance hypotheses. X‐axes display standardized values. Points are raw hibernation durations for individual squirrels. Marginal effects were derived from the top linear mixed‐effects model designed to explain intraspecific variation in hibernation duration.
Snowmelt date (a), spring temperature (b), expected date of peak NDVI (c) and expected peak NDVI (d) influenced northern Idaho ground squirrel hibernation emergence date (Julian day; ±95% CI), providing support for the food limitation and thermal tolerance hypotheses. X‐axes display standardized values. Points are raw emergence dates for individual squirrels. Marginal effects were derived from the top linear mixed‐effects model designed to explain intraspecific variation in emergence timing.
Why hibernate? Tests of four hypotheses to explain intraspecific variation in hibernation phenology

May 2023

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299 Reads

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8 Citations

Hibernation is a remarkable behaviour deployed by a diverse array of endotherms within many clades that greatly reduces metabolic need, but also has somatic costs. Hibernation in modern endotherms is often assumed to be an adaptation allowing animals to avoid extreme thermal conditions or food shortages in seasonal environments. However, many animals hibernate when foraging conditions are energetically profitable, suggesting other causal factors influence hibernation behaviour. Understanding the selection pressures responsible for intraspecific variation in the timing and duration of hibernation can help elucidate the relative evolutionary influences of the ultimate ecological causes of hibernation. We tested four previously proposed mechanistic hypotheses to explain intraspecific variation in hibernation phenology in the federally threatened northern Idaho ground squirrel (Urocitellus brunneus): (1) thermal tolerance, (2) food limitation, (3) predation avoidance and (4) sexual selection. The predation avoidance and sexual selection hypotheses received the most support, although we also found some support for the thermal tolerance and food limitation hypotheses. Heavy squirrels increased hibernation duration regardless of environmental conditions, as predicted solely by the predation avoidance hypothesis. Reproductive males emerged from hibernation earlier in spring than other sex–age classes, a pattern predicted by the sexual selection hypothesis. Temperature and food availability explained a much smaller amount of the variation in hibernation behaviour, only partially supporting predictions of the thermal tolerance and food limitation hypotheses. Our results indicate that animals navigate life‐history trade‐offs between energetic allocation to survival and reproduction via state‐dependent optimization of hibernation phenology. Consequently, any future environmental changes that influence body condition will have implications for population ecology and life‐history evolution of hibernating animals due to stark differences in daily survival probability between hibernation and the active season. Read the free Plain Language Summary for this article on the Journal blog.



We placed 5 radio collars equipped with geolocators in different positions relative to the entrance of a northern Idaho ground squirrel nest burrow (a) for 24 h on a cloudless day in summer 2020 to determine the threshold for classifying a squirrel as above or below ground during a given sampling interval. We placed a 6th geolocator ~ 100 m away in full shade to account for cloudy days and squirrels foraging in shade. The geolocators at 0 cm (burrow mouth) and 5 cm below the nest burrow entrance recorded values ≥ 1000 lx (horizontal dashed line) on 22% and 7% of sampling intervals from 8:00 to 20:00 MDT and the 2 geolocators > 5 cm below the entrance never recorded values ≥ 1000 lx (b). Conversely, the shaded and non-shaded aboveground geolocators recorded values ≥ 1000 lx on 97% and 100% of sampling intervals from 8:00 to 20:00 MDT. We therefore used 1000 lx as the threshold to determine whether a squirrel was above (≥ 1000 lx) or below (< 1000 lx) ground for geolocator readings we obtained from free-ranging squirrels
Aboveground (i.e., foraging) activity (± 95% CI) of northern Idaho ground squirrels was highest during mid-morning hours and lowest in the hours immediately after sunrise and before sunset (a); x-axis is proportional time of day for daylight hours, which accounts for changes in daylength across the active season (i.e., 0.5 = solar noon). Julian day (b), body condition (b), and conspecific density (c) influenced aboveground activity (± 95% CI) of northern Idaho grounds during daylight hours. Thermal conditions—ambient aboveground temperature (d), ambient aboveground solar radiation (d), and daily precipitation (e)—also influenced aboveground activity (± 95% CI) of northern Idaho ground squirrels during daylight hours. We generated these partial effects plots from model-averaged parameter estimates from the top generalized linear mixed-effects models designed to explain variation in northern Idaho ground squirrel aboveground activity. All models included data from 1142 squirrel days and 211,128 sampling intervals derived from 59 geolocator-equipped, free-ranging adult squirrels during summer 2017 through spring 2020
Daily foraging activity of an imperiled ground squirrel: effects of hibernation, thermal environment, body condition, and conspecific density

February 2022

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158 Reads

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6 Citations

Behavioral Ecology and Sociobiology

Food acquisition is among the most important tasks faced by free-ranging animals. Predation and thermal risks, however, can make foraging a costly endeavor and foraging can preclude other important activities. Moreover, seasonal life cycle events such as hibernation impose energetic thresholds and time constraints on foraging. These factors interact with an animal’s endogenous state to influence foraging behavior. We tested a suite of predictions based on foraging theory to explore the effects of thermal environment, body condition, and conspecific density on aboveground activity (which is primarily foraging activity) of the northern Idaho ground squirrel (Urocitellus brunneus), an imperiled rodent that hibernates for 9 months each year. We took advantage of the squirrels’ semi-fossorial lifestyle to document daily aboveground activity by attaching geolocators to squirrels. We modeled squirrel activity with generalized linear mixed-effects models to document the relative importance of thermal environment, body condition, and conspecific density for daily aboveground activity. Aboveground activity by northern Idaho ground squirrels increased throughout their active season and leaner squirrels increased their activity more than heavier squirrels as residual foraging opportunities diminished. Thermal conditions also influenced squirrel activity: squirrels spent less time above ground during extreme temperatures and on days with significant precipitation. Aboveground activity of northern Idaho ground squirrels largely adhered to predictions of risk-sensitive and state-dependent foraging theory. Management actions that enhance forage will likely improve the probability of recovery for this federally threatened species by minimizing trade-offs squirrels need to make to acquire sufficient food to survive hibernation and reproduce in subsequent years. Significance statement Acquiring food is a vital task for wild animals, but foraging can be dangerous. Hibernation imposes annual energetic requirements animals must meet within a short time when food is available and the animal is active. Hibernating species, therefore, must navigate trade-offs among foraging, predation risk, and thermal intolerance. We investigated how these pressures influence daily foraging activity of the northern Idaho ground squirrel (Urocitellus brunneus), a federally threatened species. Ground squirrels forage above ground during the active season and retreat to burrows to avoid predation and extreme weather but accept greater risks to forage as hibernation approaches. Additionally, lean squirrels with high energetic needs forage more than heavy squirrels, exposing lean squirrels to higher predation risk. Improving forage may improve recovery odds for this imperiled species by allowing squirrels to reduce their mortality risk.

Citations (3)


... It is therefore possible that larger groups may be actually more conspicuous for predators or that more eyes and ears cannot defend against certain types of predators that hunt by immediate attacks or ambush 83 . Large group size may affect survival also indirectly because individuals experience greater feeding competition that may translate into greater variance in body condition 84 . ...

Reference:

Independent fitness consequences of group size variation in Verreaux’s sifakas
Weather influences survival probability in two coexisting mammals directly and indirectly via competitive asymmetry

... In a recent study, predation avoidance and sexual selection received support for explaining intraspecific variation in hibernation phenology in the northern Idaho ground squirrel (Urocitellus brunneus, Allison et al., 2023) Males often emerged from dormancy and arrived at mating sites some days or weeks before females (termed 'protandry'), and mating occurred shortly after female emergenced from dormancy. Sexual selection may favor a life history in which relatively early-emerging males benefit from greater reproductive success (the 'mating opportunity hypothesis, ' Morbey and Ydenberg, 2001). ...

Why hibernate? Tests of four hypotheses to explain intraspecific variation in hibernation phenology

... Biologging data can be used to explore the complex relationships between behavior and body condition (Amo et al., 2007;Beale & Monaghan, 2004;Ransom et al., 2010). With our limited sample size, we documented that all gray whales with a BAI below average (i.e., less than median PCFG gray whale BAI of $26) consistently made more foraging dives than search or transit, which aligns with previous work that found individuals in poorer body condition spent more time foraging (Allison & Conway, 2022;Ransom et al., 2010;Skogland & Grøvan, 1988;Stawski & Geiser, 2010). Body condition may also play a role in how animals respond behaviorally to disturbances, as a recent meta-analysis shows that individuals in poorer body condition are more likely to exhibit high-risk behaviors (Moran et al., 2021) that potentially increases their exposure to disturbances. ...

Daily foraging activity of an imperiled ground squirrel: effects of hibernation, thermal environment, body condition, and conspecific density

Behavioral Ecology and Sociobiology