Ashley N. Leberfinger’s research while affiliated with Penn State Hershey Medical Center and Penn State College of Medicine and other places

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Publications (26)


Navigating genomic landscape of human adipose stem cell derived β-cells
  • Article

September 2021

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30 Reads

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2 Citations

Stem Cells and Development

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Ashley N. Leberfinger

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Diabetes is a pandemic manifested through glucose dysregulation mediated via inadequate insulin secretion by beta cells. A beta cell replacement strategy would transform the treatment paradigm from pharmacologic glucose modulation to a genuine cure. Stem cells have emerged as a potential source for beta cell (β-cell) engineering. The detailed generation of functional β-cells from both embryonic and induced pluripotent stem cells has recently been described. Adult stem cells, including adipose derived, may also offer a therapeutic approach but remain ill-defined. In our study, we performed an in-depth assessment of insulin producing beta cells generated from human adipose, irrespective of donor patient age, gender and health status. Cellular transformation was confirmed using flow cytometry and single cell imaging. Insulin secretion was observed with glucose stimulation and abrogated following palmitate exposure; a common free fatty acid implicated in human beta cell dysfunction. We used next generation sequencing to explore gene expression changes prior to and after differentiation of patient matched samples which revealed more than 5000 genes enriched. Adipose derived beta cells displayed comparable gene expression to native β-cells. Pathway analysis demonstrated relevance to stem cell differentiation and pancreatic developmental processes which are vital to cellular function, structural development and regulation. We conclude that the functions associated with adipose derived beta cells is mediated through relevant changes in the transcriptome which resemble those seen in native β-cell morphogenesis and maturation. Therefore, they may represent a viable option for the clinical translation of stem cell-based therapies in diabetes.


Computer-Aided Design and Manufacture of Intraoral Splints: A Potential Role in Cleft Care

May 2021

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31 Reads

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7 Citations

Journal of Surgical Research

Ashley N. Leberfinger

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Background Nasoalveolar molding is a nonsurgical modality for the treatment of cleft lip and palate that uses an intraoral splint to align the palatal shelves. Repeated impressions are needed for splint modification, each carrying risk of airway obstruction. Computer-aided design and manufacturing (CAD/CAM) has the ability to simplify the process. As a precursor to CAD/CAM splint fabrication, a proof-of-concept study was conducted to compare three-dimensional splints printed from alginate impressions versus digital scans. We hypothesized that intraoral digital scanning would compare favorably to alginate impressions for palate registration and subsequent splint manufacture, with decreased production times. Methods Alginate and digital impressions were taken from 25 healthy teenage volunteers. Digital impressions were performed with a commercially available intraoral scanner. Plaster casts made from alginate impressions were converted to Standard Triangle Language files. Patient-specific matched scans were evaluated for total surface area with the concordance correlation coefficient. Acrylic palatal splints were three-dimensionally printed from inverse digital molds. Subjective appliance fit was assessed using a five-point scale. Results A total of 23 participants were included. Most subjects preferred digital impression acquisition. Impression methods showed moderate agreement (concordance correlation coefficient 0.93). Subjects rated splints from digital impressions as having a more precise fit (4.4 versus 3.9). The digital approach decreased impression phase time by over 10-fold and overall production time by 28%. Conclusions CAD/CAM has evolved extensively over the past two decades and is now commonplace in medicine. However, its utility in cleft patients has not been fully realized. This pilot study demonstrated that CAD/CAM technologies may prove useful in patients requiring intraoral splints.


Fig. 8. Differential expression of coding and non-coding RNAs in Circos plot for young and old groups of chondrocytes from BM-MSCs: A Circos plot was prepared incorporating chondrocyte differential expressions of mRNA, sn/snoRNAs, miRNAs, lncRNAs, and circRNAs compared with MSCs (FDR < 0.05). Chromosome and bands were listed in chromosomal positions of mRNA, sn/snoRNAs, miRNAs, lncRNAs, and circRNAs expression in chondrocytes (orange color: young group; yellow color: old group). The Innermost ring is circRNAs, then lncRNAs, miRNAs, sn/sno/miscRNAs and mRNAs with darker and lighter background colors representing upregulated and downregulated genes respectively.
In silico analysis of RNA and small RNA sequencing data from Human BM-MSCs and differentiated Osteocytes, Chondrocytes and Tenocytes
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  • Full-text available

December 2020

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62 Reads

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4 Citations

Engineered Regeneration

Background Adult stem cells have a remarkable capacity of differentiating into various cell types necessary for tissue and organ regeneration. Multiple studies have focused on the differentiation potential of mesenchymal stem cells (MSCs), however little is known about the molecular characteristics of MSCs and their progenies obtained from donors of different ages. In this study, we analyzed publicly available sequencing data obtained from young (~22-year-old, n = 8) and older (~65.5-year-old, n = 8) donors of MSCs and their differentiated counterparts: osteocytes, chondrocytes and tenocytes. The raw mRNA and small RNA (non-coding RNA) sequencing data was downloaded from NIH BioProjects and systematically analyzed in order to identify uniquely expressed genes in MSC-derived osteocytes, chondrocytes and tenocytes of younger and older people. Results We identified many commonly up- and downregulated genes are similar in both groups. However, the young group displayed a greater variety of differentially expressed genes in all analyzed MSC-derived cells. This discrepancy in gene expression profiles between younger and older groups may indicate a greater differentiation potential of MSCs isolated from younger donors. miRNA and mRNA integrated analysis showed key miRNAs that regulate mRNAs in both groups from all differentiated lineages. Conclusions Our analysis provides additional information to previously reported data for identification of MSC markers of plasticity and engraftment. In addition, our data may shed light upon the molecular mechanisms of age-associated musculoskeletal diseases caused by a decreased capacity of MSCs to regenerate the locomotor system in elderly people.

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Cellular Based Strategies for Microvascular Engineering

April 2019

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369 Reads

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17 Citations

Stem Cell Reviews and Reports

Vascularization is a major hurdle in complex tissue and organ engineering. Tissues greater than 200 μm in diameter cannot rely on simple diffusion to obtain nutrients and remove waste. Therefore, an integrated vascular network is required for clinical translation of engineered tissues. Microvessels have been described as <150 μm in diameter, but clinically they are defined as <1 mm. With new advances in super microsurgery, vessels less than 1 mm can be anastomosed to the recipient circulation. However, this technical advancement still relies on the creation of a stable engineered microcirculation that is amenable to surgical manipulation and is readily perfusable. Microvascular engineering lays on the crossroads of microfabrication, microfluidics, and tissue engineering strategies that utilize various cellular constituents. Early research focused on vascularization by co-culture and cellular interactions, with the addition of angiogenic growth factors to promote vascular growth. Since then, multiple strategies have been utilized taking advantage of innovations in additive manufacturing, biomaterials, and cell biology. However, the anatomy and dynamics of native blood vessels has not been consistently replicated. Inconsistent results can be partially attributed to cell sourcing which remains an enigma for microvascular engineering. Variations of endothelial cells, endothelial progenitor cells, and stem cells have all been used for microvascular network fabrication along with various mural cells. As each source offers advantages and disadvantages, there continues to be a lack of consensus. Furthermore, discord may be attributed to incomplete understanding about cell isolation and characterization without considering the microvascular architecture of the desired tissue/organ.


Differentiation of Adipose Tissue–Derived CD34+/CD31− Cells into Endothelial Cells In Vitro

March 2019

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67 Reads

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17 Citations

Regenerative Engineering and Translational Medicine

In this study, CD34+/CD31- progenitor cells were isolated from the stromal vascular fraction (SVF) of adipose tissue using magnetic activated cell sorting. The endothelial differentiation capability of these cells in vitro was evaluated by culturing them in vascular endothelial growth factor (VEGF) induced medium for 14 days. Viability, proliferation, differentiation and tube formation of these cells were evaluated. Cell viability study revealed that both undifferentiated and endothelial differentiated cells remained healthy for 14 days. However, the proliferation rate was higher in undifferentiated cells compared to endothelial differentiated ones. Upregulation of endothelial characteristic genes (Von Willebrand Factor (vWF) and VE Cadherin) was observed in 2D culture. However, PECAM (CD31) was only found to be upregulated after the cells had formed tube-like structures in 3D Matrigel culture. These results indicate that adipose derived CD34+/CD31- cells when cultured in VEGF induced medium, are capable differentiation into endothelial-like lineages. Tube formation of the cells started 3h after seeding the cells on Matrigel and formed more stable and connected network 24 h post seeding in presence of VEGF.


Bioprinting functional tissues

January 2019

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242 Reads

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150 Citations

Acta Biomaterialia

Despite the numerous lives that have been saved since the first successful procedure in 1954, organ transplant has several shortcomings which prevent it from becoming a more comprehensive solution for medical care than it is today. There is a considerable shortage of organ donors, leading to patient death in many cases. In addition, patients require lifelong immunosuppression to prevent graft rejection postoperatively. With such issues in mind, recent research has focused on possible solutions for the lack of access to donor organs and rejections, with the possibility of using the patient's own cells and tissues for treatment showing enormous potential. Three-dimensional (3D) bioprinting is a rapidly emerging technology, which holds great promise for fabrication of functional tissues and organs. Bioprinting offers the means of utilizing a patient's cells to design and fabricate constructs for replacement of diseased tissues and organs. It enables the precise positioning of cells and biologics in an automated and high throughput manner. Several studies have shown the promise of 3D bioprinting. However, many problems must be overcome before the generation of functional tissues with biologically-relevant scale is possible. Specific focus on the functionality of bioprinted tissues is required prior to clinical translation. In this perspective, this paper discusses the challenges of functionalization of bioprinted tissue under eight dimensions: biomimicry, cell density, vascularization, innervation, heterogeneity, engraftment, mechanics, and tissue-specific function, and strives to inform the reader with directions in bioprinting complex and volumetric tissues. Statement of Significance: With thousands of patients dying each year waiting for an organ transplant, bioprinted tissues and organs show the potential to eliminate this ever-increasing organ shortage crisis. However, this potential can only be realized by better understanding the functionality of the organ and developing the ability to translate this to the bioprinting methodologies. Considering the rate at which the field is currently expanding, it is reasonable to expect bioprinting to become an integral component of regenerative medicine. For this purpose, this paper discusses several factors that are critical for printing functional tissues including cell density, vascularization, innervation, heterogeneity, engraftment, mechanics, and tissue-specific function, and inform the reader with future directions in bioprinting complex and volumetric tissues.


Squid Ring Teeth–coated Mesh Improves Abdominal Wall Repair

August 2018

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83 Reads

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13 Citations

Background:. Hernia repair is a common surgical procedure with polypropylene (PP) mesh being the standard material for correction because of its durability. However, complications such as seroma and pain are common, and repair failures still approach 15% secondary to poor tissue integration. In an effort to enhance mesh integration, we evaluated the applicability of a squid ring teeth (SRT) protein coating for soft-tissue repair in an abdominal wall defect model. SRT is a biologically derived high-strength protein with strong mechanical properties. We assessed tissue integration, strength, and biocompatibility of a SRT-coated PP mesh in a first-time pilot animal study. Methods:. PP mesh was coated with SRT (SRT-PP) and tested for mechanical strength against uncoated PP mesh. Cell proliferation and adhesion studies were performed in vitro using a 3T3 cell line. Rats underwent either PP (n = 3) or SRT-PP (n = 6) bridge mesh implantation in an anterior abdominal wall defect model. Repair was assessed clinically and radiographically, with integration evaluated by histology and mechanical testing at 60 days. Results:. Cell proliferation was enhanced on SRT-PP mesh. This was corroborated in vivo by abdominal wall histology, dramatically diminished craniocaudal mesh contraction, improved strength testing, and higher tissue failure strain. There was no increase in seroma or visceral adhesion formation. No foreign body reactions were noted on liver histology. Conclusions:. SRT applied as a coating appears to augment mesh–tissue integration and improve abdominal wall stability following bridged repair. Further studies in larger animals will determine its applicability for hernia repair in patients.


Non-coding RNAs in Various Stages of Liver Disease Leading to Hepatocellular Carcinoma: Differential Expression of miRNAs, piRNAs, lncRNAs, circRNAs, and sno/mt-RNAs

May 2018

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194 Reads

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35 Citations

Hepatocellular carcinoma (HCC) was the fifth leading cause of cancer death in men and eighth leading cause of death in women in the United States in 2017. In our study, we sought to identify sncRNAs in various stages of development of HCC. We obtained publicly available small RNA-seq data derived from patients with cirrhosis (n=14), low-grade dysplastic nodules (LGDN, n=9), high grade dysplastic nodules (HGDN, n=6), early hepatocellular carcinoma (eHCC, n=6), and advanced hepatocellular carcinoma (HCC, n=20), along with healthy liver tissue samples (n=9). All samples were analyzed for various types of non-coding RNAs using PartekFlow software. We remapped small RNA-seq to miRBase to obtain differential expressions of miRNAs and found 87 in cirrhosis, 106 in LGDN, 59 in HGDN, 80 in eHCC, and 133 in HCC. Pathway analysis of miRNAs obtained from diseased samples compared to normal samples showed signaling pathways in the microRNA dependent EMT, CD44, and others. Additionally, we analyzed the data sets for piRNAs, lncRNAs, circRNAs, and sno/mt-RNAs. We validated the in silico data using human HCC samples with NanoString miRNA global expression. Our results suggest that publically available data is a valuable resource for sncRNA identification in HCC progression (FDR set to <0.05 for all samples) and that a data mining approach is useful for biomarker development.




Citations (15)


... В качестве предшественника изготовления шин CAD/CAM было проведено экспериментальное исследование для сравнения трехмерных шин, напечатанных с альгинатных оттисков, с цифровыми сканированиями. Leberfinger A.N. et al. [30] предположили, что интроорального цифровое сканирование будет выгодно отличаться от альгинатных оттисков при регистрации неба и последующем изготовлении шин при сокращении времени производства. ...

Reference:

MODERN METHODS OF PERMANENT SPLINTING OF MOVABLE TEETH, MATERIALS, METHODS, INDICATIONS AND CONTRAINDICATIONS
Computer-Aided Design and Manufacture of Intraoral Splints: A Potential Role in Cleft Care
  • Citing Article
  • May 2021

Journal of Surgical Research

... The most well-studied and plentiful content of EVs is mRNA and microRNA (miRNA). miRNAs are 19-24-nucleotide noncoding RNA segments that serve as posttranscriptional regulators of up to 30% of mammalian genes [53][54][55]. It has been shown that miRNAs are selectively sorted into EVs, secreted through a ceramide-dependent pathway, and taken up by target cells identified by surface receptors and adhesion molecules that facilitate fusion and endocytosis [15]. ...

In silico analysis of RNA and small RNA sequencing data from Human BM-MSCs and differentiated Osteocytes, Chondrocytes and Tenocytes

Engineered Regeneration

... SVF has been shown to facilitate the self-assembly of capillary structures, integrating into host integrated vascular networks [20,21]. Another approach involves the selective enrichment of specific SVF cell subpopulations to enhance their regenerative potential [22,23]. Furthermore, pre-culturing SVF under adverse conditions, such as hypoxia, has been demonstrated to boost its angiogenic capacity [24,25]. ...

Differentiation of Adipose Tissue–Derived CD34+/CD31− Cells into Endothelial Cells In Vitro
  • Citing Article
  • March 2019

Regenerative Engineering and Translational Medicine

... A major issue in the field of tissue engineering is the inability to grow tissues to a size appropriate for therapeutic use. This is mainly due to a lack of a functional and perfusable vascular network to ensure the long-term survival and function of engineered tissues [2][3][4][5]. Therefore, achieving consistently successful vascularization of tissues is one of the key factors that will contribute to the major advancement in tissue engineering, allowing larger tissues to be produced with greater therapeutic potential. ...

Cellular Based Strategies for Microvascular Engineering

Stem Cell Reviews and Reports

... This technique facilitates the rapid fabrication of complex, tissue-mimetic structures, closely replicating the in vivo microenvironment of skeletal muscle. 102,103 Bioprinting methods are classified into inkjet-based, extrusion-based, and laser- Defect Model: VML model (75% muscle loss) within mouse quadriceps femoris (QF) muscles ...

Bioprinting functional tissues
  • Citing Article
  • January 2019

Acta Biomaterialia

... In particular, silk production in heterologous organisms, such as yeast [19] and bacteria [20], opened up new possibilities for engineering high-performance materials and composites. Although biosilk has appealing properties as a popular protein fiber, SRT proteins have similar beta-sheet architecture but superior water resistance and tunable properties such as extensibility [21], biocompatibility [22], switchable thermal conductivity [23], optical transparency [24] and self-healing abilities [25]. It is important to note that both biosilk and SRT do not require any post-translational modifications (i.e. ...

Squid Ring Teeth–coated Mesh Improves Abdominal Wall Repair

... Research has shown that a significant portion of human DNA is transcribed into non-protein-coding RNA, which has been conclusively proven to play a complicated role in physiological processes. Important biological roles of ncRNAs, including long non-coding RNAs (lncRNAs), microRNAs (miRNAs) and circular RNAs (circRNAs), have been shown in several disorders [37][38][39][40], with a particular emphasis on liver disease [41][42][43][44]. Previous research has conclusively demonstrated that numerous ncRNAs exhibit differential expression levels between the ageing and youthful states of the liver in mice, pigs and humans [12,45,46]. ...

Non-coding RNAs in Various Stages of Liver Disease Leading to Hepatocellular Carcinoma: Differential Expression of miRNAs, piRNAs, lncRNAs, circRNAs, and sno/mt-RNAs

... In the systematic review by Lebenfinger et al, 66% of patients were seen initially with seroma, 8% with a mass, 7% with mass and seroma, while 18% with other symptoms such as capsular contracture, axillary lymphadenopathy and skin lesions. 12 One of our cases presented with skin rush, mass and lymphadenopathy whereas the other with mass and seroma. Surgical resection remains the standard of care for patients with BIA-ALCL and includes explantation, total intact capsulectomy and en bloc resection of all associated masses and involved lymph nodes. ...

Breast Implant–Associated Anaplastic Large Cell Lymphoma: A Systematic Review
  • Citing Article
  • October 2017

JAMA Surgery

... Other ncRNA classes, including piwi-interacting RNAs (piRNAs), small nuclear RNAs (snRNAs), and small nucleolar RNAs (snoRNAs), are also dysregulated in ACC and influence genomic stability and tumor suppressor pathways [25]. Although their role in pACC is less well defined, they likely contribute to the regulatory networks underlying tumorigenesis. ...

Small Non-coding RNA Abundance in Adrenocortical Carcinoma: A Footprint of a Rare Cancer

Journal of Genomics

... For example, both lymphocytes and tumor spheroids can be combined inside hanging drops, such as a study which used this technique to assess the cytotoxicity of CAR T cells recognizing the human epidermal growth factor receptor 2 (HER2) in breast cancer [35,39]. Oil and water immersion microfluidic techniques can also be used to combine cancer cells with lymphocytes within droplets in order to image cytotoxicity or perform small-volume cytokine sampling [39][40][41][42][43][44][45][46][47][48]. ...

3D Printing for Cell Therapy Applications
  • Citing Chapter
  • August 2017