Arik Kershenbaum’s research while affiliated with University of Cambridge and other places

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Publications (43)


Acoustic localisation as a tool to aid monitoring and management of golden jackals (Canis aureus)
  • Preprint

November 2024

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2 Reads

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Elisabeth Bru

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Mihaela Faur

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Arik Kershenbaum

Fig. 1. Hierarchy of acoustic signal specificity.
Fig. 2. (A) The call of the American toad (Anaxyrus americanus), which only produces a single call, repeated for long periods. (B) The varied mimicry of the northern mockingbird (Mimus polyglottus), composed of varied songs of other species, which would be difficult to detect in a general way. The spectrograms show time on the x-axis and frequency on the y-axis.
Fig. 3. Example annotation of acoustic signals, in this case, wolf howls. Taken from Kershenbaum et al. (2019), showing a spectrogram generated using Raven Pro.
Different types of machine learning techniques.
Automatic detection for bioacoustic research: a practical guide from and for biologists and computer scientists
  • Article
  • Full-text available

October 2024

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382 Reads

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2 Citations

Biological reviews of the Cambridge Philosophical Society

Arik Kershenbaum

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Çaglar Akçay

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Lakshmi Babu-Saheer

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[...]

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Recent years have seen a dramatic rise in the use of passive acoustic monitoring (PAM) for biological and ecological applications, and a corresponding increase in the volume of data generated. However, data sets are often becoming so sizable that analysing them manually is increasingly burdensome and unrealistic. Fortunately, we have also seen a corresponding rise in computing power and the capability of machine learning algorithms, which offer the possibility of performing some of the analysis required for PAM automatically. Nonetheless, the field of automatic detection of acoustic events is still in its infancy in biology and ecology. In this review, we examine the trends in bioacoustic PAM applications , and their implications for the burgeoning amount of data that needs to be analysed. We explore the different methods of machine learning and other tools for scanning, analysing, and extracting acoustic events automatically from large volumes of recordings. We then provide a step-by-step practical guide for using automatic detection in bioacoustics. One of the biggest challenges for the greater use of automatic detection in bioacoustics is that there is often a gulf in expertise between the biological sciences and the field of machine learning and computer science. Therefore, this review first presents an overview of the requirements for automatic detection in bioacoustics, intended to familiarise those from a computer science background with the needs of the bioacoustics community, followed by an introduction to the key elements of machine learning and artificial intelligence that a biologist needs to understand to incorporate automatic detection into their research. We then provide a practical guide to building an automatic detection pipeline for bioacoustic data, and conclude with a discussion of possible future directions in this field.

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Location of the study site within central Wisconsin showing the deployment of the 11 acoustic recorders across 21 sites (yellow diamonds) in 2019. Maps produced in QGIS using Google Satellite and ESRI World Light Gray imagery.
Example spectrogram showing coyote howls, followed by dog barks. Spectrogram produced in Raven Pro 1.5 with 2048 sample Hann window with 11.2 Hz bandwidth 3 dB filter, 50% overlap, and 1024 sample hop size.
Temporal occurrence of calls shown by the number of calls (or train whistles) per hour each night for each of wolves, coyotes, dogs, and trains. The time under each bar is the start of the hour, e.g. the bar above 17:00 h is the number of calls between 17:00:00–17:59:59 h.
of the predicted versus observed behavior. Arrow directions are to be read in the direction of the stimulus to the focal (i.e. the effect that the stimulus has on the focal). Based on the ecology of fear theory, the predictions were that coyotes and wolves would elicit vocal responses from dogs, green (+) arrows, while dogs would silence coyotes and wolves, as well as wolves silencing coyotes, red (−) arrows. Black arrows indicate no effect was predicted or had occurred. However, our results showed that coyotes elicited replies from both dogs and wolves at higher than chance rates, but responded only to wolves, and did not produce more choruses. Dogs responded to both coyotes and wolves, as predicted. Thus, no silencing effect was found. Images downloaded under a standard license from shutterstock.com and canva.com.
Not afraid of the big bad wolf: calls from large predators do not silence mesopredators

February 2024

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128 Reads

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1 Citation

Large predators are known to shape the behavior and ecology of sympatric predators via conflict and competition, with mesopredators thought to avoid large predators, while dogs suppress predator activity and act as guardians of human property. However, interspecific communication between predators has not been well‐explored and this assumption of avoidance may oversimplify the responses of the species involved. We explored the acoustic activity of three closely related sympatric canids: wolves Canis lupus, coyotes Canis latrans, and dogs Canis familiaris. These species have an unbalanced triangle of risk: coyotes, as mesopredators, are at risk from both apex‐predator wolves and human‐associated dogs, while wolves fear dogs, and dogs may fear wolves as apex predators or challenge them as intruders into human‐allied spaces. We predicted that risk perception would dictate vocal response with wolves and dogs silencing coyotes as well as dogs silencing wolves. Dogs, in their protective role of guarding human property, would respond to both. Eleven passive acoustic monitoring devices were deployed across 13 nights in central Wisconsin, and we measured the responses of each species to naturally occurring heterospecific vocalizations. Against our expectation, silencing did not occur. Instead, coyotes were not silenced by either species: when hearing wolves, coyotes responded at greater than chance rates and when hearing dogs, coyotes did not produce fewer calls than chance rates. Similarly, wolves responded at above chance rates to coyotes and at chance rates when hearing dogs. Only the dogs followed our prediction and responded at above chance rates in response to both coyotes and wolves. Thus, instead of silencing their competitors, canid vocalizations elicit responses from them suggesting the existence of a complex heterospecific communication network.



Schematic tree diagram depicting the key components of the message in a bottle (MIAB). The diagram provides a visual representation of the essential elements comprising the MIAB intended for potential extraterrestrial recipients. The proposed message is organized into three different sections, intended for both more and less advanced extraterrestrial civilizations. These sections encompass scientific documentation, including Earth's spatial coordinates and a potential timestamp. Notably, the two principal sections encompass comprehensive documentation of human life and culture, with the categories of information related to these aspects highlighted in blue.
Flow chart illustrating the logical basis and methodology used in constructing the MIAB's key components.
Diagrammatic representation of MIAB's structural design primarily based on dictionaries. The illustration portrays the construct, predominantly reliant on dictionaries. The content delineates two distinct sectors, encompassing fundamental elements of universal science and the depiction of critical scientific information about life on Earth. Three interconnected dictionaries are proposed, with the initial two being adaptations of those encoded within the Golden Records, representing fundamental principles of mathematics and physics.
The proposed GC‐based location map for Message in a Bottle. This schematic representation depicts a celestial location map that relies on the longitudinal distribution of globular clusters (GCs) as reference points with reference to the galactic center, with each GC indicated by its respective millisecond pulsar (MSP) marker(s). GCs, known for their stability, serve as crucial cosmic landmarks for interstellar navigation and communication, with the inclusion of plausible MSPs enhancing precision in celestial positioning.
Left panel: Distribution of 164 globular clusters' proper motion velocity with orbital integrations were done in the Irrgang et al. (2013) galactic model; Right panel: Time resolution of the GC map at different proper motion velocities for four spatial resolution cases.
Message in a Bottle—An Update to the Golden Record: 1. Objectives and Key Content of the Message

December 2023

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121 Reads

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1 Citation

In the first part of this series, we delve into the foundational aspects of “Message in a Bottle (MIAB)” (henceforth referred to as MIAB). This study builds upon the legacy of the Voyager Golden Records, launched aboard Voyager 1 and 2 in 1977, which aimed to communicate with intelligent species beyond our world. These records not only offer a snapshot of Earth and human civilization but also represent our desire to establish contact with advanced alien civilizations. Given the absence of mutually understood signs, symbols, and semiotic conventions, MIAB, like its predecessor, uses scientific methods to design an innovative means of communication that encapsulates the story of humanity. Our goal is to share our collective knowledge, emotions, innovations, and aspirations in a way that provides a universal, yet contextually relevant, understanding of human society, the evolution of life on Earth, and our hopes and concerns for the future. Through this time and space traveling capsule, we also strive to inspire and unify current and future generations to celebrate and safeguard our shared human experience.


Fig. 1. How meaning arises between individual non-humans (upper) and humans (lower). The figure illustrates how meaning may be understood to arise in human and non-human communication. (a) The signaller's cognitive processes motivate a communicative signal, the Interactant S Meaning Facet. (b) This signal occurs via a communicative modality (e.g. acoustic), and co-relates (or refers) to an external stimulus (e.g. the eagle), which is part of the Signal Meaning Facet. (c) The perceiver interprets the signal and forms a cognitive inference and interpretation, the Interactant P Meaning Facet, which may or may not fully -but must partially -correspond to the Interactant S Meaning Facet. (d) The behaviour of the perceiver is altered in a way that produces the result desired/ evolutionary outcome required by the signaller, which is the Resultant Meaning Facet. (e) In the case of mutualistic interactions, there may also be correlation between the goals of the signaller and perceiver, a Resultant Mutualistic Meaning Facet, with the roles being reversible, as is common in human dialogue. Here, mutual understanding is frequently signalled from both sides: 'Shall we go for a walk?'-'Yes'-'Good'.
A multifaceted framework to establish the presence of meaning in non-human communication

June 2023

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185 Reads

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5 Citations

Biological reviews of the Cambridge Philosophical Society

Does non-human communication, like language, involve meaning? This question guides our focus through an interdisciplinary review of the theories and terminology used to study meaning across disciplines and species. Until now, it has been difficult to apply the concept of meaning to communication in non-humans. This is partly because of the varied approaches to the study of meaning. Additionally, while there is a scholarly acknowledgement of potential meaning in non-human cognition, there is also scepticism when the topic of communication arises. We organise some of the key literature into a coherent framework that can bridge disciplines and species, to ensure that aspects of meaning are accurately and fairly compared. We clarify the growing view in the literature that, rather than requiring multiple definitions or being split into different types, meaning is a multifaceted yet still unified concept. In so doing, we propose that meaning is an umbrella term. Meaning cannot be summed up with a short definition or list of features, but involves multiple complexities that are outlined in our framework. Specifically, three global facets are needed to describe meaning: a Signal Meaning Facet, an Interactant Meaning Facet, and a Resultant Meaning Facet. Most importantly, we show that such analyses are possible to apply as much to non-humans as to humans. We also emphasise that meaning nuances differ among non-human species, making a dichotomous approach to meaning questionable. Instead, we show that a multifaceted approach to meaning establishes how meaning appears within highly diverse examples of non-human communication, in ways consistent with the phenomenon's presence in human non-verbal communication and language(s). Therefore, without further recourse to 'functional' approaches that circumvent the critical question of whether any non-human meaning exists, we show that the concept of meaning is suitable for evolutionary biologists, behavioural ecologists, and others to study, to establish exactly which species exhibit meaning in their communication and in what ways.


Figure 2: A diagram illustrating the methodology for the key components design. 303
Figure 2: Scatterplot of first set of chosen GCs with í µí±€ í µí±‰ í µí¼– (−11, −9).
Figure 3: The proposed GC-Based Location Map for MIAB. 337
Figure 4: Skeletal structure of the three dimensional version of the modified Location Map.
Globular Clusters in the Location Map
Message in a Bottle - An Update to the Golden Record

May 2023

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238 Reads

Communication is an essential asset enabling humankind to forge an advanced civilization. Using approximately 31,000 languages from the Stone Age to our present digital information society, humans have connected and collaborated to accomplish remarkable feats. As the newly dawned Space Age progresses, we are attempting to communicate with intelligent species beyond our world, on distant planets and in Earth’s far future. Absent mutually understood signs, symbols, and semiotic conventions, this study, the “Message in a Bottle”, uses scientific methods to assess and design a means of communication encapsulating the story of humanity, conveying our thoughts, emotions, ingenuity, and aspirations. The message will be structured to provide a universal yet contextual understanding of modern human society, evolution of life on Earth, and challenges for the future. In assembling this space and time capsule, we aim to energize and unite current generations to celebrate and preserve humanity.


Combining acoustic localisation and high-resolution land cover classification to study predator vocalisation behaviour

February 2023

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77 Reads

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2 Citations

Wildlife Research

Context: The ecology of cryptic animals is difficult to study without invasive tagging approaches or labour-intensive field surveys. Acoustic localisation provides an effective way to locate vocalising animals using acoustic recorders. Combining this with land cover classification gives new insight into wild animal behaviour using non-invasive tools. Aims: This study aims to demonstrate how acoustic localisation – combined with high-resolution land cover classification – permits the study of the ecology of vocalising animals in the wild. We illustrate this technique by investigating the effect of land cover and distances to anthropogenic features on coyote and wolf vocal behaviour. Methods: We collected recordings over 13 days in Wisconsin, USA, and triangulated vocalising animals’ locations using acoustic localisation. We then mapped these locations onto land cover using a high-resolution land cover map we produced for the area. Key results: Neither coyotes nor wolves vocalised more in one habitat type over another. Coyotes vocalised significantly closer to all human features than expected by chance, whereas wolves vocalised significantly further away. When vocalising closer to human features, coyotes selected forests but wolves showed no habitat preference. Conclusions: This novel combination of two sophisticated, autonomous sensing-driven tools permits us to examine animal land use and behavioural ecology using passive sensors, with the aim of drawing ecologically important conclusions. Implications: We envisage that this method can be used at larger scales to aid monitoring of vocally active animals across landscapes. Firstly, it permits us to characterise habitat use while vocalising, which is an essential behaviour for many species. Furthermore, if combined with additional knowledge of how a species’ habitat selection while vocalising relates to its general habitat use, this method could permit the derivation of future conclusions on prevailing landscape use. In summary, this study demonstrates the potential of integrating acoustic localisation with land cover classification in ecological research.


Effect of the interaction of Root distance/Breed group and age on the Reply scores (howling moaning, yelping, and bark-howling response)
In a, X-axis shows the values of breeds’ genetic distance from wolves; the Y-axis shows the scores of the PCA factors, and the dots represent partial residuals, controlling for the effects of other variables in the model besides the plotted ones. The different types of lines represent the age categories: −1SD = 1.89 years, mean = 4.56 years, +1 SD = 7.23 years of age. In b, X-axis shows the age as a scaled variable, the Y-axis shows the scores of the PCA factors, and the dots represent the partial residuals from the model. The different types of lines represent the breed categories (ancient, modern).
Effect of the interaction of Root distance and Playback part/Age on the frequency of stress behaviours
In a, X-axis shows the values of breeds’ genetic distance from wolves; the Y-axis shows the number of stress behaviours of the subjects, and the dots represent partial residuals. The different types of lines represent the playback parts (Solo1, Chorus, Solo2). In b, X-axis again shows the values of breeds’ genetic distance from wolves, the Y-axis shows the scores of the PCA factors, and the dots represent partial residuals, controlling for the effects of other variables in the model besides the plotted ones. The different types of lines represent the age categories: −1SD = 1.89 years, mean = 4.56 years, +1 SD = 7.23 years of age.
The setup of the testing room
The owner sat on a chair, listening to music through headphones, and reading a book during the test. The dog moved freely in the room, and the stimulus was played from a speaker hidden behind the opaque, removable wall. Drawn markers served for coding the dogs’ proximity to the owner, sound source, and exit.
Construction of the howling stimulus
It consisted of three parts in a defined order: Solo1, Chorus and Solo2.
Genetic distance from wolves affects family dogs’ reactions towards howls

February 2023

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701 Reads

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6 Citations

Communications Biology

Domestication dramatically changes behaviour, including communication, as seen in the case of dogs (Canis familiaris) and wolves (Canis lupus). We tested the hypothesis that domestication may affect an ancient, shared communication form of canids, the howling which seems to have higher individual variation in dogs: the perception and usage of howls may be affected by the genetic relatedness of the breeds to their last common ancestor with wolves (‘root distance’) and by other individual features like age, sex, and reproductive status. We exposed 68 purebred dogs to wolf howl playbacks and recorded their responses. We identified an interaction between root distance and age on the dogs’ vocal and behavioural responses: older dogs from more ancient breeds responded longer with howls and showed more stress behaviours. Our results suggest that domestication impacts vocal behaviour significantly: disintegrating howling, a central, species-specific communication form of canids and gradually eradicating it from dogs’ repertoire.


Acoustic localisation of wildlife with low-cost equipment: lower sensitivity, but no loss of precision

December 2021

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134 Reads

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7 Citations

Wildlife Research

Context: Synchronised acoustic recorders can be used as a non-invasive tool to detect and localise sounds of interest, including vocal wildlife and anthropogenic sounds. Due to the high cost of commercial synchronised recorders, acoustic localisation has typically been restricted to small or well funded surveys. Recently, low-cost acoustic recorders have been developed, but until now their efficacy has not been compared with higher specification recorders. Aims: The present study aimed to compare the efficacy of a newly developed low-cost recorder, the Conservation at Range through Audio Classification and Localisation (CARACAL), with an established, high-end recorder, the Wildlife Acoustics Song Meter (SM). Methods: Four recorders of each type were deployed in a paired set-up across five nights in Wisconsin, USA. The recordings allowed for manual identification of domestic dog (Canis familiaris), grey wolf (Canis lupus), coyote (Canis latrans) and barred owl (Strix varia) calls, and then the ability of each recorder type to detect and localise the vocalising animals was compared. Key results: The CARACALs were less sensitive, detecting only 47.5% of wolf, 55% of coyote, 65% of barred owl and 82.5% of dog vocalisations detected by the paired SMs. However, when the same vocalisations were detected on both recorders, localisation was comparable, with no significant difference in the precision or maximum detection ranges. Conclusions: Low-cost recording equipment can be used effectively for acoustic localisation of both wild and domestic animals. However, the lower sensitivity of the CARACALs means that a denser network of these recorders would be needed to achieve the same efficacy as the SMs. Deploying a greater number of cheaper recorders increases the labour time in the field and the quantity of data to process and store. Thus, there is a trade-off between cost and time to be considered. Implications: The ability to use low-cost recorders for acoustic localisation provides new avenues for tracking, managing and researching a wide range of wildlife species. Presently, CARACALs are more suited to monitoring species that have small home ranges and high amplitude vocalisations, and for when a large time investment for in situ equipment checks and data processing is feasible.


Citations (36)


... They emphasize the need to include human factors in such studies as well as in management approaches to better understand how non-consumptive predator effects could help restore ecosystem complexity. Root-Gutteridge et al. (2024) investigated the acoustic interactions among three sympatric canids -wolves, coyotes Canis latrans, and dogs Canis familiarisrevealing that rather than silencing each other, these species actively respond to one another's vocalizations. They suggest that interspecific communication and risk perception among canids are more nuanced than previously thought. ...

Reference:

Wolves across borders
Not afraid of the big bad wolf: calls from large predators do not silence mesopredators

... Efforts in communication with civilizations beyond our Solar System have been on going over the past several decades, including the Arecibo Message (Sagan, 1975), Evpatoria Transmission Message (Dutil & Dumas, 2016), Beacon in the Galaxy (Jiang et al., 2022), Message in a Bottle (Jiang et al., 2023), and those of Vakoch (2008Vakoch ( , 2009Vakoch ( , 2011. They proposed bold approaches toward representing humanity in all its complexity while simultaneously capturing a universal yet contextual understanding of modern human society, evolution of life on Earth, and challenges for the future. ...

Message in a Bottle—An Update to the Golden Record: 1. Objectives and Key Content of the Message

... As Scarantino (2013: 64) points out, "information is a mongrel concept comprising a variety of different phenomena under the same heading." Indeed, the term "information" is often used as a synonym for meaning (Amphaeris et al., 2023;Rendall et al., 2009), representation (e.g., Seyfarth and Cheney, 2003), or as what a receiver infers (e.g., Slocombe and Zuberbühler, 2005) or predicts when perceiving a signal (e.g., Smith, 1997;Seyfarth et al., 2010). The latter definitioninformation as a prediction of event statesseems to play a prominent role in the animal communication literature (Scarantino, 2013). ...

A multifaceted framework to establish the presence of meaning in non-human communication

Biological reviews of the Cambridge Philosophical Society

... [43]), are another promising method, with the advantage of using biologically relevant hypotheses based on the genetic distance from the common ancestor of all dog breeds (e.g. [44,45]). At the same time, we think that in terms of ecological relevance, investigations that are based on functional breed selection (e.g. ...

Genetic distance from wolves affects family dogs’ reactions towards howls

Communications Biology

... (Vu et al., 2023), gibbons (Vu & Tran, 2019;Dufourq et al., 2021), howler monkeys Alouatta spp. (Pérez-Granados & Traba, 2021), wolves (Kershenbaum et al., 2019;Smith et al., 2021) or cetaceans (Zimmer, 2011). Such methods can offer detection ranges on the order of several kilometres for some species, compared with tens of metres for camera traps. ...

Acoustic localisation of wildlife with low-cost equipment: lower sensitivity, but no loss of precision
  • Citing Article
  • December 2021

Wildlife Research

... In conclusion, several considerations should be taken into account when studying the taxonomy and biology of Iberian Nemesia: (i) the structure of the burrow may provide essential traits for the diagnosis of the species (Mora, 2015: 31, 76, 304); (ii) the genus Nemesia, as other mygalomorph spiders, shows a very conservative morphology (Buchli, 1969;Bond et al., 2006), which constitutes a challenge for species identification, (iii) because of its complex geological and climate history and heterogeneous geography, the Iberian peninsula constitutes a biodiversity hotspot with a high level of endemism (Ortuño & Martínez-Pérez, 2011), iv) Nemesia species evolution and distribution may have been affected by the type of soil where they dwell, as already reported in other ground-dwelling microhabitat arachnid specialists, such as Solifugae (Brookhart & Muma, 1981;Griffin, 1998;Valdivia et al., 2011;Hebets et al., 2023) or wolf spiders, where the type of soil could have influenced different biological features such as the evolution of courtship communication (Elias et al., 2004(Elias et al., , 2010Hebets et al., 2008Hebets et al., , 2013Hebets et al., , 2021Hebets et al., , 2023Starrett et al., 2022). For all these reasons, all records based solely on morphological identification should be taken with great caution, especially those whose specimens are found hundreds of kilometres away from the site of the original description, suggesting a strong discontinuity in the distribution. ...

Sister species diverge in modality‐specific courtship signal form and function

... In contrastive learning approaches, the model architecture comprises two important components: A feature extractor designed to map the input data into an abstract latent representation; and a shallow neural network called projector, which Species Taxon # Ids Chiffchaffs (CHF) [19] Birds 23 Tree pipits (TP) [19] Birds 10 Little Owls (LO) [19] Birds 16 Eurasia eagle owls (EEO) Birds 7 Spotted hyenas (SH) [20] Mammals 5 Hyrax (HY) [21] Mammals 19 Grey wolves (GW) [22] Mammals 7 Total number of recordings 14295 TABLE I SUMMARY OF DATASET. projects the features to a low dimensional space where the contrastive loss is computed. ...

Lifetime changes in vocal syntactic complexity of rock hyrax males are determined by social class
  • Citing Article
  • July 2019

Animal Behaviour

... Handheld microphones and ARUs are non-invasive methods that do not require the capture of individual animals, and so reduce disturbance and welfare impacts (Browning et al., 2017;Soulsbury et al., 2020;Ross et al., 2023). Acoustic data can help with the monitoring of elusive, cryptic, or nocturnal species that are difficult to observe directly (Zwerts et al., 2021), such as bats (Frick, 2013), wolves Canis lupus (Harrington & Mech, 1982;Kershenbaum, Owens & Waller, 2019), or marine mammals (Fleishman et al., 2023). Additionally, where animals use long-distance vocalisations, ARUs are beneficial in recording species over large spatial scales, for example crested argus pheasants Rheinardia spp. ...

Tracking cryptic animals using acoustic multilateration: A system for long-range wolf detection

The Journal of the Acoustical Society of America

... Eavesdropping in multi-species networks could improve threat detection in many biologically meaningful contexts (see Magrath et al., 2015 for review), including foraging (e.g., Batcheller, 2017), habitat selection (e.g., Mönkkönen and Forsman, 2002), and offspring defense (this study). It still remains to be seen, however, whether the symmetrical (whereby each interacting species recognizes the other's referential alarm call; Walton and Kershenbaum, 2019) or asymmetrical (whereby only one actor recognizes the other's call; this study) systems are more likely to evolve and be maintained by mutualistic selective forces. Both theoretical modeling and more empirical and meta-analytic work may be able to resolve these broader scale questions. ...

Heterospecific recognition of referential alarm calls in two species of lemur
  • Citing Article
  • August 2018

Bioacoustics