Anna Serkina’s research while affiliated with Skolkovo Institute of Science and Technology and other places

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Publications (3)


Lipidome Alterations in Brain and Blood Plasma in Rats with Sciatic Nerve Injury
  • Article

December 2024

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14 Reads

Journal of Evolutionary Biochemistry and Physiology

M. Cherniaeva

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D. Senko

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A. Serkina

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[...]

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Ph. Khaitovich

Fig. 1: Demographic and mental health characteristics of the volunteer cohort (n = 604). (a) The age and sex distribution among the volunteers in the cohort. (b) The distribution of self-reported anxiety (HADS-A) and depression (HADS-D) symptom scores among the individuals in the cohort. Colours indicate severity of symptoms: green represents no or mild symptoms (0-10) on both scales, brown represent moderate or severe symptoms (≥11) on one of the scales, and blue indicates moderate or severe symptoms (≥11) on both scales. Colour intensity is proportional to the number of individuals having the respective scores. Pearson correlation coefficient and p-value is indicated on the plot. (c) The co-dependency among demographic factors and self-reported clinical indicators. The numbers depicted represent the percentage of variation (R 2 ) explained for a specific variable by another variable, as determined by linear regression model analysis.
Fig. 2: Lipidome associations with HADS-A and HADS-D scores. (a) The measured lipid classes and the number of species in each one. CAR indicates acylcarnitine; CE, cholesteryl ester; DAG, diacylglycerol; TAG, triglyceride; Cer, ceramide; SM, sphingomyelin; PE, phosphatidylethanolamine; PE P-, plasmanyl/plasmenyl phosphatidylethanolamine; LPE, lysophosphatidylethanolamine; PC, phosphatidylcholine; PC O-, plasmanyl/plasmenyl phosphatidylcholine; LPC, lysophosphatidylcholine; LPC-O, lyso plasmanyl/plasmenyl phosphatidylcholine; PI, phosphatidylinositol. (b) p-value (top) and q-value (FDR-corrected p-value, bottom) distributions for the Pearson correlation analysis between abundances of lipids and HADS-A or HADS-D scores (n = 604). Dotted line separates 10% FDR threshold, and the eight lipids significantly associated with HADS-D are coloured in dark blue. (c) For lipids significantly associated with HADS-D scores, the distribution by lipid classes. (d) For lipids significantly associated with HADS-D scores, the double bond index distribution (purple) compared to other lipids (grey). Double bond index was defined as the number of double bonds divided by the number of side chains in the lipid structure.
Fig. 3: Congruence of lipidome alterations in volunteer cohort and clinical depression patients. (a) Age and sex distribution for the dataset of patients with clinical depression (n = 32). (b) Relationship between the association of HADS-D and lipid abundances (Pearson correlation coefficients) and alterations in lipid abundances in clinical depression (mean base-2 log transformed fold-changes between clinical depression and the volunteer cohort). Spearman correlation coefficient and p-value of the relationship is indicated on the corresponding plots (n = 186 lipids). Top left: all lipids; bottom left: all lipids without triglycerides; top right: ether phospholipids are highlighted in colour (PC O-, PE P-, LPC O-, shades correspond to Fig. 2a); bottom right: triglycerides are highlighted in colour, the shades indicate the total number of double bonds.
Fig. 4: Predictive modelling for the detection of individuals with high HADS-D scores. (a) Boxplots illustrating the randomized cross-validation accuracy and ROC AUC values of the model separating clinical depression from healthy controls (n = 32 and n = 36, respectively). Standard boxplot definition was used for illustration (the box extends from the first quartile to the third quartile of the data, with a line at the median; the whiskers extend from the box to the farthest data point lying within 1.5x of the inter-quartile range from the box). (b) The relationship between volunteers' HADS-D values and their predicted scores derived from the model trained on clinical depression patients versus controls (c and p on the top: Spearman correlation coefficients and p-values, n = 589, excluding 15 volunteer individuals used in model training). Individual predictions are represented by coloured points, with mean predicted scores for each HADS-D value represented by larger circles (c and p below: Pearson correlation coefficients and p-values for averaged prediction scores across discrete HADS-D values, n = 16). Light green illustrates volunteers with no or mild symptoms (HADS-D = 0-10), dark green illustrates those with moderate to severe symptoms (HADS-D ≥ 11), and teal blue symbols on the right illustrate clinical depression patients. (c) Top: the number of individuals with specific HADS-D scores. Bottom: ROC AUC values of the model performance in distinguishing individuals with the specific HADS-D scores (dark olive), as well as clinical depression (teal blue), from those without depressive symptoms (HADS-D ≤ 7). (d) Depression probability scores generated by the model for volunteers with no or mild symptoms (HADS-D ≤ 10), those with severe self-reported depression (HADS-D ≥ 15), and hospitalized patients with clinical depression. Individual predictions are represented by coloured points, while the predicted scores averaged in each group are illustrated by larger outlined circles. For the group of volunteers with severe depressive symptom, red indicates those on prescribed antidepressants, blue indicates non-medicated individuals, and olive represents those with unconfirmed medication status.
Screening for depression in the general population through lipid biomarkers
  • Article
  • Full-text available

November 2024

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39 Reads

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4 Citations

EBioMedicine

Background Anxiety and depression significantly contribute to the overall burden of mental disorders, with depression being one of the leading causes of disability. Despite this, no biochemical test has been implemented for the diagnosis of these mental disorders, while recent studies have highlighted lipids as potential biomarkers. Methods Using a streamlined high-throughput lipidome analysis method, direct-infusion mass spectrometry, we evaluated blood plasma lipid levels in 604 individuals from a general urban population and analysed their association with self-reported anxiety and depression symptoms. We also assessed lipidome profiles in 32 patients with clinical depression, matched to 21 healthy controls. Findings We found a significant correlation between lipid abundances and the severity of self-reported depression symptoms. Moreover, lipid alterations detected in high scoring volunteers mirrored the lipidome profiles identified in patients with clinical depression included in our study. Based on these findings, we developed a lipid-based predictive model distinguishing individuals reporting severe depressive symptoms from non-depressed subjects with high accuracy. Interpretation This study demonstrates the possibility of generalizing lipid alterations from a clinical cohort to the general population and underscores the potential of lipid-based biomarkers in assessing depressive states. Funding This study was sponsored by the Moscow Center for Innovative Technologies in Healthcare, №2707-2, №2102-11.

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Citations (2)


... Several studies have examined the relationships between depressive symptoms and physical health indicators and symptoms; most of these studies have reported significant relationships. More specifically, indicators include body mass index (BMI), waist-to-hip ratio, blood pressure, lung capacity measured by Forced Expiratory volume (FEV1) and Forced Vital Capacity (FVC), heart rate, and lipid profile [11,12,[16][17][18][19][20]. Also, several systematic reviews and meta-analysis studies have explored the relationship between depression and comorbidities or chronic illnesses such as cardiovascular diseases, diabetes mellitus, chronic obstructive pulmonary disease, stroke, arthritis, cancer, and Parkinson's disease [21][22][23][24][25]. ...

Reference:

Physical Health Among Adults with Depressive Symptoms in Qatar: Findings from Qatar Biobank Population-Based Study
Screening for depression in the general population through lipid biomarkers

EBioMedicine

... MDA-MB-231 cells were transfected with lentiviral vectors pLVX-shRNA1 (Clontech Laboratories, United States) with shRNA to the IGFBP6 gene (MDA-MB-231 IGFBP6 cell line) and control shRNA to the luciferase gene of the firefly Photinus pyralis (MDA-MB-231 luc cell line) [8]. MDA-MB-231 luc and MDA-MB-231 IGFBP6 cells were cultured in 25-cm 2 culture flasks (Corning, United States) at 37°C with 5% CO 2 in DMEM/F12 medium (Gibco, United States) supplemented with penicillin and streptomycin (PanEco, Russia) to a final concentration of 100 U/mL and 100 μg/mL, respectively (PanEco, Russia), 10% FBS (HyClone, United States), and 1% GlutaMAX TM (Gibco, United States). ...

IGFBP6 regulates extracellular vesicles formation via cholesterol abundance in MDA-MB-231 cells
  • Citing Article
  • June 2024

Biochimie