Andrei V Medvedev’s research while affiliated with Georgetown University and other places

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Publications (27)


Temporal Derivative Distribution Repair (TDDR): A motion correction method for fNIRS
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September 2018

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369 Reads

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332 Citations

NeuroImage

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Ruth S. Ludlum

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Andrei V. Medvedev

Functional near-infrared spectroscopy (fNIRS) is an optical neuroimaging technique of growing interest as a tool for investigation of cortical activity. Due to the on-head placement of optodes, artifacts arising from head motion are relatively less severe than for functional magnetic resonance imaging (fMRI). However, it is still necessary to remove motion artifacts. We present a novel motion correction procedure based on robust regression, which effectively removes baseline shift and spike artifacts without the need for any user-supplied parameters. Our simulations show that this method yields better activation detection performance than 5 other current motion correction methods. In our empirical validation on a working memory task in a sample of children 7-15 years, our method produced stronger and more extensive activation than any of the other methods tested. The new motion correction method enhances the viability of fNIRS as a functional neuroimaging modality for use in populations not amenable to fMRI.


Fig. 2. The 10-5 montage with TCREs (red) placed near the 10-20 locations. Note: T7/P7 and T8/P8 are the same as T3/T5 and T4/T6 in 1020 nomenclature. The blue rings are for standard 10-20 electrode locations. 
A representative example of simultaneously recorded EEG and tEEG from one patient. Conventional EEG (bipolar montage, channel F8-F4, panels B, F and I, 1–70 Hz, 200 S/s), tEEG (from a tripolar electrode placed right behind the F8 position (F8'), panels D, H and J, 1–100 Hz, 200 S/s,) and their spectrograms (panels A, E and panels C, G for EEG and tEEG, respectively) starting $\(\sim 10\)$ min before and continuing during a generalized seizure with onset marked with the dashed vertical black line. Seizures is identified by marked increases in signal amplitude and power at all frequencies. Panels E-H: eleven-second EEG and tEEG segments (marked by the black line in panel C) are shown at higher temporal resolution. Note a series of high gamma-band bursts HFOs at 60–80 Hz (highlighted by ellipse in C) occurring about every 2 s, which are clearly seen in the tEEG spectrogram only. Panels I, J: Further zoom-in of two-second segment shows one HFO in tEEG (black horizontal line in the panel J) while this HFO is absent in EEG (panel I).
TCREs are relatively immune to myogenic activity. Panel A: the top trace (blue) is tEEG from a TCRE placed next to the conventional disc electrode at O1. The middle trace (red) is from the conventional disc electrode at O1. Both the top and middle traces are recorded with respect to the reference on the right collar bone (RCB). The bottom trace (green) is from the O1 disc electrode with respect to the A1 reference electrode. Conventional EEG is heavily corrupted by muscle artifacts which are evident from approximately 3 to 6 seconds of the record (middle [red] and bottom [green] traces) coinciding with head movements by the subject. These artifacts are nearly unnoticeable in the tEEG (top trace [blue]). Panel B: the power spectral densities for the signals shown in panel A. The power spectrum for the tEEG (blue) has much less high frequency power (>30 Hz) due to myogenic activity.
Panel B shows 12 minutes of bipolar EEG from Fp2-F4 (1–70 Hz, 200 S/s). Panel A is the corresponding spectrogram. Panel E shows 30 seconds of EEG from Panel B at the onset of the generalized seizure (dashed line). Panels C, D, and F are the corresponding tEEG signals from Fp2. (1–100 Hz, 200 S/s). Note the high gamma-band burst HFOs just prior to the partial seizure (highlighted by ellipse in panel C).
Panel A shows the relationship between the clinical seizure onset zone (SOZ) and HFO-containing channels for the patient from Fig. 5. Panel B shows the relationship between the clinical irritative zone (IZ) and HFO-containing channels for the patient from Fig. 6. SOZ or IZ was determined for each patient independently by three epileptologists (IEMJ, JNG, and RSF) based on EEG data and videos only.

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High-Frequency Oscillations Recorded on the Scalp of Patients With Epilepsy Using Tripolar Concentric Ring Electrodes
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  • Full-text available

June 2014

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146 Reads

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47 Citations

IEEE Journal of Translational Engineering in Health and Medicine

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[...]

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Andrei V Medvedev

Epilepsy is the second most prevalent neurological disorder ( (sim 1) % prevalence) affecting (sim 67) million people worldwide with up to 75% from developing countries. The conventional electroencephalogram is plagued with artifacts from movements, muscles, and other sources. Tripolar concentric ring electrodes automatically attenuate muscle artifacts and provide improved signal quality. We performed basic experiments in healthy humans to show that tripolar concentric ring electrodes can indeed record the physiological alpha waves while eyes are closed. We then conducted concurrent recordings with conventional disc electrodes and tripolar concentric ring electrodes from patients with epilepsy. We found that we could detect high frequency oscillations, a marker for early seizure development and epileptogenic zone, on the scalp surface that appeared to become more narrow-band just prior to seizures. High frequency oscillations preceding seizures were present in an average of 35.5% of tripolar concentric ring electrode data channels for all the patients with epilepsy whose seizures were recorded and absent in the corresponding conventional disc electrode data. An average of 78.2% of channels that contained high frequency oscillations were within the seizure onset or irritative zones determined independently by three epileptologists based on conventional disc electrode data and videos.

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Sensitivity of fNIRS to cognitive state and load

February 2014

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1,050 Reads

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261 Citations

Functional near-infrared spectroscopy (fNIRS) is an emerging low-cost noninvasive neuroimaging technique that measures cortical bloodflow. While fNIRS has gained interest as a potential alternative to fMRI for use with clinical and pediatric populations, it remains unclear whether fNIRS has the necessary sensitivity to serve as a replacement for fMRI. The present study set out to examine whether fNIRS has the sensitivity to detect linear changes in activation and functional connectivity in response to cognitive load, and functional connectivity changes when transitioning from a task-free resting state to a task. Sixteen young adult subjects were scanned with a continuous-wave fNIRS system during a 10-min resting-state scan followed by a letter n-back task with three load conditions. Five optical probes were placed over frontal and parietal cortices, covering bilateral dorsolateral PFC (dlPFC), bilateral ventrolateral PFC (vlPFC), frontopolar cortex (FP), and bilateral parietal cortex. Activation was found to scale linearly with working memory load in bilateral prefrontal cortex. Functional connectivity increased with increasing n-back loads for fronto-parietal, interhemispheric dlPFC, and local connections. Functional connectivity differed between the resting state scan and the n-back scan, with fronto-parietal connectivity greater during the n-back, and interhemispheric vlPFC connectivity greater during rest. These results demonstrate that fNIRS is sensitive to both cognitive load and state, suggesting that fNIRS is well-suited to explore the full complement of neuroimaging research questions and will serve as a viable alternative to fMRI.


Gamma- and theta-band synchronization during semantic priming reflect local and long-range lexical–semantic networks

October 2013

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59 Reads

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57 Citations

Brain and Language

Anterior and posterior brain areas are involved in the storage and retrieval of semantic representations, but it is not known how these areas dynamically interact during semantic processing. We hypothesized that long-range theta-band coherence would reflect coupling of these areas and examined the oscillatory dynamics of lexical-semantic processing using a semantic priming paradigm with a delayed letter-search task while recording subjects' EEG. Time-frequency analysis revealed facilitation of semantic processing for Related compared to Unrelated conditions, which resulted in a reduced N400 and reduced gamma power from 150 to 450ms. Moreover, we observed greater anterior-posterior theta coherence for Unrelated compared to Related conditions over the time windows 150-425ms and 600-900ms. We suggest that while gamma power reflects activation of local functional networks supporting semantic representations, theta coherence indicates dynamic coupling of anterior and posterior areas for retrieval and post-retrieval processing and possibly an interaction between semantic relatedness and working memory.


Does the resting state connectivity have hemispheric asymmetry? A near-infrared spectroscopy study

May 2013

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46 Reads

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73 Citations

NeuroImage

Near-infrared spectroscopy (NIRS) is a novel technology for low-cost noninvasive brain imaging suitable for use in virtually all subject and patient populations. Numerous studies of brain functional connectivity using fMRI, and recently NIRS, suggest new tools for the assessment of cognitive functions during task performance and the resting state (RS). We analyzed functional connectivity and its possible hemispheric asymmetry measuring coherence of optical signals at low frequencies (0.01-0.1Hz) in the prefrontal cortex in 13 right-handed (RH) and 2 left-handed (LH) healthy subjects at rest (4-8min) using a continuous-wave NIRS instrument CW5 (TechEn, Milford, MA). Two optical probes were placed bilaterally over the inferior frontal gyrus (IFG) and the middle frontal gyrus (MFG) using anatomical landmarks of the 10-20 system. As a result, 28 optical channels (14 for each hemisphere) were recorded for changes in oxygenated (HbO) and de-oxygenated (HbR) hemoglobin. Global physiological signals (respiratory and cardiac) were removed using Principal and Independent Component Analyses. Inter-channel coherences for HbO and HbR signals were calculated using Morlet wavelets along with correlation coefficients. Connectivity matrices showed specific patterns of connectivity which was higher within each anatomical region (IFG and MFG) and between hemispheres (e.g., left IFG<->right IFG) than between IFG and MFG in the same hemisphere. Laterality indexes were calculated as t-values for the 'left>right' comparisons of intrinsic connectivity within each regional group of channels in each subject. Regardless of handedness, the group average laterality indexes were negative thus revealing significantly higher connectivity in the right hemisphere in the majority of RH subjects and in both LH subjects. The analysis of Granger Causality between hemispheres has also shown a greater flow of information from the right to the left hemisphere which may point to an important role of the right hemisphere in the resting state. These data encourage further exploration of the NIRS connectivity and its application for the analysis of hemispheric relationships within the functional architecture of the brain.



Capturing Dynamic Patterns of Task-Based Functional Connectivity with EEG

November 2012

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65 Reads

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76 Citations

NeuroImage

A new approach to trace the dynamic patterns of task-based functional connectivity, by combining signal segmentation, dynamic time warping (DTW), and Quality Threshold (QT) clustering techniques, is presented. Electroencephalography (EEG) signals of 5 healthy subjects were recorded as they performed an auditory oddball and a visual modified oddball tasks. To capture the dynamic patterns of functional connectivity during the execution of each task, EEG signals are segmented into durations that correspond to the temporal windows of previously well-studied event-related potentials (ERPs). For each temporal window, DTW is employed to measure the functional similarities among channels. Unlike commonly used temporal similarity measures, such as cross correlation, DTW compares time series by taking into consideration that their alignment properties may vary in time. QT clustering analysis is then used to automatically identify the functionally connected regions in each temporal window. For each task, the proposed approach was able to establish a unique sequence of dynamic pattern (observed in all 5 subjects) for brain functional connectivity.


Feasibility of recording high frequency oscillations with tripolar concentric ring electrodes during pentylenetetrazole-induced seizures in rats

August 2012

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104 Reads

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5 Citations

Conference proceedings: ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference

As epilepsy remains a refractory condition in about 30% of patients with complex partial seizures, electrical stimulation of the brain has recently shown potential for additive seizure control therapy. Previously, we applied noninvasive transcranial focal stimulation via novel tripolar concentric ring electrodes (TCREs) on the scalp of rats after inducing seizures with pentylenetetrazole (PTZ). We developed a close-loop system to detect seizures and automatically trigger the stimulation and evaluated its effect on the electrographic activity recorded by TCREs in rats. In our previous work the detectors of seizure onset were based on seizure-induced changes in signal power in the frequency range up to 100 Hz, while in this preliminary study we assess the feasibility of recording high frequency oscillations (HFOs) in the range up to 300 Hz noninvasively with scalp TCREs during PTZ-induced seizures. Grand average power spectral density estimate and generalized likelihood ratio tests were used to compare power of electrographic activity at different stages of seizure development in a group of rats (n= 8). The results suggest that TCREs have the ability to record HFOs from the scalp as well as that scalp-recorded HFOs can potentially be used as features for seizure onset detection.


Schematic representing the general organization of the paradigm and the task. Alternating blocks of sentences and scrambled sentences (order counterbalanced across subjects) were presented to the subjects. Each sentence block contained 14 trials of sentences while each scrambled sentence block contained 14 trials of scrambled sentences. The experimenter asked the subject questions after each trial to ensure subject comprehension and attention.
Time–frequency representations (TFRs) of evoked data. (A) The evoked responses for open class (OC) and closed class (CC) conditions at a left frontal channel (F3). TFRs are shown separately for the OC and CC conditions, the raw difference between these conditions (OC–CC), and the statistically thresholded difference (Masked). Plots are shown as a relative change compared to baseline. (B) The evoked responses for sentence (S) and scrambled sentence (SS) conditions at a left frontal channel (FC3). No significant difference exists for either comparison.
Time–frequency representations showing the alpha-band difference between the OC and CC conditions at a left frontal channel (F3). The topography shows the raw difference between conditions during the time of the significant alpha effect. See legend to Figure 2 for more details.
Time–frequency representations showing the alpha- and low beta-band difference between the sentence and scrambled sentence conditions at a left frontal channel (FC3). See legend to Figure 2 for details.
TFRs showing (A) the alpha-band difference between the OC and CC conditions in the scrambled sentence (SS) context at a right posterior channel (O2), and (B) no significant difference between the OC and CC conditions in the sentence (S) context. See legend to Figure 2 for details.
Word Class and Context Affect Alpha-Band Oscillatory Dynamics in an Older Population

April 2012

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184 Reads

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20 Citations

Differences in the oscillatory EEG dynamics of reading open class (OC) and closed class (CC) words have previously been found (Bastiaansen et al., 2005) and are thought to reflect differences in lexical-semantic content between these word classes. In particular, the theta-band (4–7 Hz) seems to play a prominent role in lexical-semantic retrieval. We tested whether this theta effect is robust in an older population of subjects. Additionally, we examined how the context of a word can modulate the oscillatory dynamics underlying retrieval for the two different classes of words. Older participants (mean age 55) read words presented in either syntactically correct sentences or in a scrambled order (“scrambled sentence”) while their EEG was recorded. We performed time–frequency analysis to examine how power varied based on the context or class of the word. We observed larger power decreases in the alpha (8–12 Hz) band between 200–700 ms for the OC compared to CC words, but this was true only for the scrambled sentence context. We did not observe differences in theta power between these conditions. Context exerted an effect on the alpha and low beta (13–18 Hz) bands between 0 and 700 ms. These results suggest that the previously observed word class effects on theta power changes in a younger participant sample do not seem to be a robust effect in this older population. Though this is an indirect comparison between studies, it may suggest the existence of aging effects on word retrieval dynamics for different populations. Additionally, the interaction between word class and context suggests that word retrieval mechanisms interact with sentence-level comprehension mechanisms in the alpha-band.



Citations (24)


... Accurate estimation of the hemodynamic response function in the channel requires the detection and removal of these MAs. Commonly used methods for MA correction include movement artifact reduction algorithm (MARA), wavelet-based filtering, temporal principal component analysis (tPCA), and temporal derivative distribution repair (TDDR) [20][21][22][23][24][25]. Following MA correction, bandpass filtering is applied to eliminate physiological noise sources, such as cardiac pulse, respiration, and Mayer waves [26]. ...

Reference:

A Deep-Learning Empowered, Real-Time Processing Platform of fNIRS/DOT for Brain Computer Interfaces and Neurofeedback
Temporal Derivative Distribution Repair (TDDR): A motion correction method for fNIRS
  • Citing Article
  • September 2018

NeuroImage

... This could contribute into the analysis of temporal intervals between sound events, which are important for speech recognition in humans and species-specific vocalizations in animals. It is known that perception of the temporal context of signals (grouping and separation of consecutive sound com ponents) facilitates their understanding and the development of specific behavioral responses [6][7][8][9]. The roles of adaptation in the grouping and separa tion of sound events by single auditory neurons have been studied not so long ago [10][11][12][13][14][15][16]. ...

Neurodynamics for auditory stream segregation: tracking sounds in the mustached bat's natural environment
  • Citing Article
  • January 2003

Network Computation in Neural Systems

... The TCRE has previously been used to identify markers of seizure during wake for patients with epilepsy Besio et al., 2014;Makeyev et al., 2013), but has not previously been systematically tested for sleep assessments. Thus, this study sought to directly compare TCRE and more conventional EEG signals using quantitative EEG analytical approaches applied to sleep study recordings using TCRE electrodes and EEG derived from the outer-rings of two distantly placed TCRE electrodes. ...

High-Frequency Oscillations Recorded on the Scalp of Patients With Epilepsy Using Tripolar Concentric Ring Electrodes

IEEE Journal of Translational Engineering in Health and Medicine

... measuring the brain functions associated with gF (Pinti et al. 2023;Yen et al. 2023). Among these technologies, the portability (Balardin et al. 2017;Kiguchi et al. 2012;Tran et al. 2023;Zhao et al. 2021), strong resistance to interference (Fishburn et al. 2014;Yang et al. 2022), and cost-effectiveness (Kwasa et al. 2023;Rahman et al. 2020) of fNIRS technology, making it a promising tool for the standardized and objective measurement of gF. Brain imaging studies have confirmed that the functional connectivity (FC) of the frontal lobe reflects the state of gF (Chan et al. 2018;Cipolotti et al. 2023). ...

Sensitivity of fNIRS to cognitive state and load

... This was proposed to be associated with controlled processes during retrieval and termination of search before making a decision ( Figure 2). Delta band activity has been associated with cortical inhibition in the medial frontal cortical regions proposed to attenuate irrelevant activity for the current task (Harmony, 2013), whereas theta band activity has been linked to cognitive control functions during memory retrieval (Bakker et al., 2015;Mellem et al., 2013;Shahin et al., 2009). We previously posited that theta power changes related to cognitive control could reflect information accumulation and integration occurring prior to or around making a decision needed for memory retrieval (Werkle-Bergner et al., 2014). ...

Gamma- and theta-band synchronization during semantic priming reflect local and long-range lexical–semantic networks
  • Citing Article
  • October 2013

Brain and Language

... While the majority of works related to optical imaging of the brain have been concentrated on capturing the slow hemodynamic response, several attempts have also been made to optically measure the neuronal activities[35,[95][96][97][98][99][100][101][102][103][104][105][106][107]. The idea of noninvasively measuring this evoked fast optical signal can be traced back to[108], in which it was demonstrated that neuronal activity potentially results in light scatter changes. ...

Fast optical signal in the prefrontal cortex correlates with EEG
  • Citing Article
  • January 2010

IFMBE proceedings

... For example, the default mode network (DMN) is unevenly distributed functionally and structurally between the hemispheres and is predominantly left-brained [43]. The asymmetry in hemispheric functional gradients we observed may also be related to the previously reported tendency of left hemispheric regions to interact intrahemispherically and the right hemispheric regions to interact more bilaterally, with greater information flow from the right to the left hemisphere, stronger FC from the right to the left prefrontal cortex, and higher correlations between the left hemispheric language regions than between their right hemispheric cognates [44,45]. ...

Does the resting state connectivity have hemispheric asymmetry? A near-infrared spectroscopy study
  • Citing Article
  • May 2013

NeuroImage

... Compared to EEG with conventional disc electrodes Laplacian EEG via TCREs (tEEG) has been shown to have significantly better spatial selectivity (approximately 2.5 times higher), signal-to-noise ratio (approximately 3.7 times higher), and mutual information (approximately 12 times lower) [4]. Because of its ability to attenuate common movement and muscle artifacts tEEG found numerous applications in a wide range of areas including brain-computer interface [5,6], seizure onset detection [7][8][9][10][11], detection of high-frequency oscillations (HFOs) and seizure onset zones [1,12], etc. ...

Feasibility of recording high frequency oscillations with tripolar concentric ring electrodes during pentylenetetrazole-induced seizures in rats
  • Citing Article
  • August 2012

Conference proceedings: ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference

... PTZ is a widely used drug for inducing epileptic seizure [16]. In a previous study, inhibition of the gamma aminobutyric acid (GABA) receptor, a main inhibitory receptor, was found to be the main cause of PTZ-induced seizures [17]. ...

Effects of transcranial focal electrical stimulation via tripolar concentric ring electrodes on pentylenetetrazole-induced seizures in rats
  • Citing Article
  • January 2013

Epilepsy Research

... In a classical P300 speller BCI, keys in the graphical user interface (GUI) are arranged in a 6 × 6 matrix [3], with each row and column in the matrix flashing repeatedly in a random sequence to generate visual stimulations. When the user focuses on a particular key, the flashing of the row and the column containing the desired key is recognized as a deviant stimulus, evoking a P300 response similar to the oddball paradigm [7,8]. Due to the low signal-to-noise ratio (SNR) of single-trial EEG signals, generally multiple repetitions are required, to confirm a selection. ...

Capturing Dynamic Patterns of Task-Based Functional Connectivity with EEG
  • Citing Article
  • November 2012

NeuroImage