Andreas Stoffel’s research while affiliated with University of Konstanz and other places

Biologists are keen to understand how processes in cells react to environmental changes. Differential gene expression analysis allows biologists to explore functions of genes with data generated from different environments. However, these data and analysis lead to unique challenges since tasks are ill-defined, require implicit domain knowledge, comprise large volumes of data, and are, therefore, of explanatory nature. To investigate a scalable visualization-based solution, we conducted a design study with three biologists specialized in differential gene expression analysis. We stress our contributions in three aspects: first, we characterize the problem domain for exploring differential gene expression data and derive task abstractions and design requirements. Second, we investigate the design space and present an interactive visualization system, called VisExpress. Third, we evaluate the usefulness of VisExpress via a Pair Analytics study with real users and real data and report on insights that were gained by our experts with VisExpress.

In this article, we describe a workflow and tool that allows a flexible formation of hypotheses about text features and their combinations, which are significantly connected in time to quantitative phenomena observed in stock data. To support such an analysis, we combine the analysis steps of frequent quantitative and text-oriented data using an existing a priori method. First, based on heuristics, we extract interesting intervals and patterns in large time series data. The visual analysis supports the analyst in exploring parameter combinations and their results. The identified time series patterns are then input for the second analysis step, in which all identified intervals of interest are analyzed for frequent patterns co-occurring with financial news. An a priori method supports the discovery of such sequential temporal patterns. Then, various text features such as the degree of sentence nesting, noun phrase complexity, and the vocabulary richness, are extracted from the news items to obtain meta-patterns. Meta-patterns are defined by a specific combination of text features which significantly differ from the text features of the remaining news data. Our approach combines a portfolio of visualization and analysis techniques, including time, cluster, and sequence visualization and analysis functionality. We provide a case study and an evaluation on financial data where we identify important future work. The workflow could be generalized to other application domains such as data analysis of smart grids, cyber physical systems, or the security of critical infrastructure, where the data consist of a combination of quantitative and textual time series data.

When exploring large spatial datasets, zooming and panning interactions often lead to the loss of contextual overview. Existing overview-plus-detail approaches allow users to view context while inspecting details, but they often suffer from distortion or overplotting. In this paper, we present an off-screen visualization method called Ambient Grids that strikes the balance between overview and details by preserving the contextual information as color grids within a designated space around the focal area. In addition, we describe methods to generate Ambient Grids for point data using data aggregation and projection. In a use case, we show the usefulness of our technique in exploring the VAST Challenge 2011 microblog dataset.

Visual analytics enables us to analyze huge information spaces in order to support complex decision making and data exploration. Humans play a central role in generating knowledge from the snippets of evidence emerging from visual data analysis. Although prior research provides frameworks that generalize this process, their scope is often narrowly focused so they do not encompass different perspectives at different levels. This paper proposes a knowledge generation model for visual analytics that ties together these diverse frameworks, yet retains previously developed models (e.g., KDD process) to describe individual segments of the overall visual analytic processes. To test its utility, a real world visual analytics system is compared against the model, demonstrating that the knowledge generation process model provides a useful guideline when developing and evaluating such systems. The model is used to effectively compare different data analysis systems. Furthermore, the model provides a common language and description of visual analytic processes, which can be used for communication between researchers. At the end, our model reflects areas of research that future researchers can embark on.

Color, as one of the most effective visual variables, is used in many techniques to encode and group data points according to different features. Relations between features and groups appear as visual patterns in the visualization. However, optical illusions may bias the perception at the first level of the analysis process. For instance, in pixel-based visualizations contrast effects make pixels appear brighter if surrounded by a darker area, which distorts the encoded metric quantity of the data points. Even if we are aware of these perceptual issues, our visual cognition system is not able to compensate these effects accurately. To overcome this limitation, we present a color optimization algorithm based on perceptual metrics and color perception models to reduce physiological contrast or color effects. We evaluate our technique with a user study and find that the technique doubles the accuracy of users comparing and estimating color encoded data values. Since the presented technique can be used in any application without adaption to the visualization itself, we are able to demonstrate its effectiveness on data visualizations in different domains.

Event detection from text data streams has been a popular research area in the past decade. Recently, the evolution of microblogging and social network services opens up great opportunities for various kinds of knowledge-based intelligence activities which require tracking of real-time events. In a sense, visualizations in combination with analytical processes could be a viable method for such tasks because it can be used to analyze the sheer amounts of text streams. However, data analysts and visualization experts often face grand challenges stemming out of the ill-defined concept of event and various kinds of textual data. As a result, we have few guidelines on how to build successful visual analysis tools that can handle specific event types and diverse textual data sources. Our goal is to take the first step towards answering the question by organizing insights from prior research studies on event detection and visual analysis. In the scope of this report, we summarize the evolution of event detection in combination with visual analysis over the past 14 years and provide an overview of the state-of-the-art methods. Our investigation sheds light on various kinds of research areas that can be the most beneficial to the field of visual text event analytics.

We present a tangible approach for exploring and comparing multi-dimensional data points collaboratively by combining Sifteo Cubes with glyph visualizations. Various interaction techniques like touching, shaking, moving or rotating the displays support the user in the analysis. Context dependent glyph-like visualization techniques make best use of the available screen space and cube arrangements. As a first proof of concept we apply our approach to real multi-dimensional datasets and show with a coherent use case how our techniques can facilitate the exploration and comparison of data points. Finally, further research directions are shown when combining Sifteo Cubes with glyphs and additional context information provided by multi-touch tables.

Visual analytics (VA) system development started in academic research institutions where novel visualization techniques and open source toolkits were developed. Simultaneously, small software companies, sometimes spin-offs from academic research institutions, built solutions for specific application domains. In recent years we observed the following trend: some small VA companies grew exponentially; at the same time some big software vendors such as IBM and SAP started to acquire successful VA companies and integrated the acquired VA components into their existing frameworks. Generally the application domains of VA systems have broadened substantially. This phenomenon is driven by the generation of more and more data of high volume and complexity, which leads to an increasing demand for VA solutions from many application domains. In this paper we survey a selection of state-of-the-art commercial VA frameworks, complementary to an existing survey on open source VA tools. From the survey results we identify several improvement opportunities as future research directions.

When representing 2D data points with spacious objects such as labels, overlap can occur. We present a simple algorithm which modifies the (Mani-) Wordle idea with scan-line based techniques to allow a better placement. We give an introduction to common placement techniques from different fields and compare our method to these techniques w.r.t. euclidean displacement, changes in orthogonal ordering as well as shape and size preservation. Especially in dense scenarios our method preserves the overall shape better than known techniques and allows a good trade-off between the other measures. Applications on real world data are given and discussed. © 2012 Wiley Periodicals, Inc.