Amit Etkin’s research while affiliated with Stanford University and other places

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Publications (257)


ENIGMA-PGC demographic data
HCP-YA demographic data
Structural covariance of early visual cortex is negatively associated with PTSD symptoms: A Mega-Analysis from the ENIGMA PTSD workgroup
  • Preprint
  • File available

March 2025

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107 Reads

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Soumyaa Joshi

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Poornima Kumar

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[...]

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Kerry Ressler

Background: Identifying robust neural signatures of posttraumatic stress disorder (PTSD) symptoms is important to facilitate precision psychiatry and help in understanding and treatment of the disorder. Emergent research suggests structural covariance of early visual regions is associated with later PTSD development. However, large-scale analyses are needed, in heterogeneous samples of trauma-exposed and trauma naive individuals, to determine if such a neural signature is a robust, and potentially a pretrauma, marker of vulnerability. Methods: We analyzed data from the ENIGMA-PTSD dataset (n = 2,814) and the Human Connectome Project Young Adult (HCP-YA) dataset (n = 890) to investigate whether structural covariance of early visual cortex is associated with either PTSD symptoms or perceived stress. Structural covariance was derived from a multimodal pattern previously identified in recent trauma survivors, and participant loadings on the profile were included in linear mixed effects models to evaluate associations with stress. Results: Early visual cortex covariance loadings were negatively associated with PTSD symptoms in the ENIGMA-PTSD dataset. The relationship persisted when accounting for prior childhood maltreatment; supporting PTSD symptom specificity, no relationship was observed with depressive symptoms and no association was observed between loadings and perceived stress measures in the HCP-YA dataset. Conclusion: Structural covariance of early visual cortex was robustly associated with PTSD symptoms across an international, heterogeneous sample of trauma survivors. Future studies should aim to identify specific mechanisms that underlie structural alterations in the visual cortex to better understand posttrauma psychopathology.

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Subtypes identified use a single modality of neuroimaging data
A–C Diagnoses distribution across the modality-specific subtypes. For each modality, the Sankey diagram depicts subtype assignments for participants from the three diagnose groups (PTSD, TBI, and PTSD&TBI). D–F Stability measures of the modality-specific subtypes. For each modality, the adjusted rand index (ARI) and adjusted mutual information (AMI) values were estimated between clustering solutions on resampled data (80% participants, without replacement, 100 times). Bounds of the box represent the 1st (25%) and 3rd (75%) quartiles, the central line represents the median, the whiskers represent the values within 1.5 times of the interquartile range, the flier points represent outliers falling beyond the whiskers. G-I. Differences in the modality-specific patterns between the two subtypes. For each regional measure, the statistical difference between the two subtypes was tested using the post-clustering difference testing procedure proposed by Hivert et al. [47]. The effect size (Cohen’s d) of each region was reported.
Low consistency of subtyping solutions between and within data modalities
A Subtype solutions across modalities. The Sankey diagram depicts different subtype assignments across clustering solutions for the three data modalities. B Between modalities consistency of the identified subtypes. The adjusted rand index (ARI) and adjusted mutual information (AMI) values were estimated between clustering solutions derived using different data modalities. C–E Consistency of the subtypes using two different feature types from the (C) structural, (D) task-based, or (E) resting-state data. For each data modality, the ARI and AMI values were estimated between clustering solutions derived using two different clustering features. Bounds of the box represent the 1st (25%) and 3rd (75%) quartiles, the central line represents the median, the whiskers represent the values within 1.5 times of the interquartile range, the flier points represent outliers falling beyond the whiskers.
Subtyping using alternative methods
A Consistency of subtyping solutions for each modality of data by using Heterogeneity through Discriminative Analysis (HYDRA). For each modality, the adjusted rand index (ARI) and adjusted mutual information (AMI) values were estimated between clustering solutions on resampled data (80% participants, without replacement, 100 times). B Consistency of subtypes between K-means and HYDRA. The ARI and AMI values were estimated between clustering solutions derived using K-means and HYDRA. C Consistency across data modalities for HYDRA-based subtypes. The ARI and AMI values were estimated between clustering solutions derived using different clustering features. Bounds of the box represent the 1st (25%) and 3rd (75%) quartiles, the central line represents the median, the whiskers represent the values within 1.5 times of the interquartile range, the flier points represent outliers falling beyond the whiskers.
Subtyping analysis on the external validation dataset
A Differences on the Hamilton Depression Rating Scale (HAMD) between subtypes identified using variants of features extracted from resting-state data. B Stability of subtypes identified with each type of feature. For each feature type, stability was estimated by calculating the adjusted rand index (ARI) and adjusted mutual information (AMI) between clustering solutions on resampled data (80% participants, without replacement, 100 times). C Consistency of subtypes identified using different types of features. The ARI and AMI values were estimated between clustering solutions derived using different clustering features. Bounds of the box represent the 1st (25%) and 3rd (75%) quartiles, the central line represents the median, the whiskers represent the values within 1.5 times of the interquartile range, the flier points represent outliers falling beyond the whiskers. *p < 0.05.
Neuroimaging-based variability in subtyping biomarkers for psychiatric heterogeneity

November 2024

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42 Reads

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3 Citations

Molecular Psychiatry

Neuroimaging-based subtyping is increasingly used to explain heterogeneity in psychiatric disorders. However, the clinical utility of these subtyping efforts remains unclear, and replication has been challenging. Here we examined how the choice of neuroimaging measures influences the derivation of neuro-subtypes and the consequences for clinical delineation. On a clinically heterogeneous dataset (total n = 566) that included controls (n = 268) and cases (n = 298) of psychiatric conditions, including individuals diagnosed with post-traumatic stress disorder (PTSD), traumatic brain injury (TBI), and comorbidity of both (PTSD&TBI), we identified neuro-subtypes among the cases using either structural, resting-state, or task-based measures. The neuro-subtypes for each modality had high internal validity but did not significantly differ in their clinical and cognitive profiles. We further show that the choice of neuroimaging measures for subtyping substantially impacts the identification of neuro-subtypes, leading to low concordance across subtyping solutions. Similar variability in neuro-subtyping was found in an independent dataset (n = 1642) comprised of major depression disorder (MDD, n = 848) and controls (n = 794). Our results suggest that the highly anticipated relationships between neuro-subtypes and clinical features may be difficult to discover.


PTSD-related differences in resting-state functional connectivity and associations with sex hormones

September 2024

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33 Reads

Background: Posttraumatic stress disorder (PTSD) is a debilitating condition that disproportionately impacts individuals who are female. Prior research indicates that males with PTSD exhibit hypoconnectivity of frontal brain regions measured with resting electroencephalography (EEG). The present study examined functional connectivity among females with PTSD and trauma-exposed controls, as well as the impact of sex hormones. Methods: Participants included 61 females (Mage = 31.41, SD = 8.64) who endorsed Criterion A trauma exposure. Resting state EEG data were recorded for five minutes in the eyes open position. Using a Linear Mixed Effects model, paired region-of-interest power envelope connectivity of the theta band (4-7 Hz) served as the response variables. Results: Compared to controls, the PTSD group displayed hyperconnectivity between visual brain regions and the rest of the cerebral cortex (pFDR < 0.05). Additionally, participants with PTSD demonstrated enhanced connectivity between the default mode network and frontoparietal control network compared to controls (pFDR < 0.05), as well as increased connectivity between the ventral attention network and the rest of the cerebral cortex (pFDR < 0.05). Estradiol was associated with higher connectivity, while progesterone was associated with lower connectivity, but these did not survive correction. Conclusions: Results are consistent with prior research indicating that PTSD is associated with altered connectivity in visual brain regions, which may reflect disrupted visual processing related to reexperiencing symptoms (e.g., intrusive memories). Our findings provide additional support for the relevance of the theta frequency range in PTSD given its role in fear learning and regulation processes.



Fig 1: (A) Recruitment Pipeline. Every participant undergoes a screening process and is then separated into one of 4 groups. (B) Imaging pipeline. (C) Gender balance per group for all reported participants. (D) Age per group (in years) for all reported participants.
Concurrent single-pulse (sp) TMS/fMRI to reveal the causal connectome in healthy and patient populations

September 2024

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37 Reads

Neuroimaging and cognitive neuroscience studies have identified neural circuits linked to anxiety, mood, and trauma-related symptoms and focused on their interaction with the medial prefrontal default mode circuitry. Despite these advances, developing new neuromodulatory treatments based on neurocircuitry remains challenging. It remains unclear which nodes within and controlling these circuits are affected and how their impairment is connected to psychiatric symptoms. Concurrent single-pulse (sp) TMS/fMRI offers a promising approach to probing and mapping the integrity of these circuits. In this study, we present concurrent sp-TMS/fMRI data along with structural MRI scans from 152 participants, including both healthy and depressed individuals. The sp-TMS was administered to 11 different cortical sites, providing a dataset that allows researchers to investigate how brain circuits are modulated by spTMS.


Baseline Cognition Is Not Associated With Depression Outcomes in Vortioxetine for Major Depressive Disorder: Findings From Placebo-Controlled Trials

September 2024

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21 Reads

The Journal of Clinical Psychiatry

Objective: Major depressive disorder (MDD) is a common psychiatric disorder for which pharmacologic standard-of-care treatments have limited efficacy, particularly among individuals with cognitive dysfunction. Cognitive dysfunction is observed in approximately 25%-50% of those with MDD, wherein response to standard-of-care medications is reduced. Vortioxetine is an approved antidepressant that has shown evidence of procognitive effects in patients. It is not known if it has greater clinical efficacy in MDD patients with cognitive dysfunction, a more difficult to treat population, than other antidepressants. Methods: This study was a reanalysis of 1,812 subjects with MDD across 4 placebo controlled trials. Baseline cognition was measured by the Digit Symbol Substitution Test (DSST), the primary measure used to demonstrate vortioxetine's procognitive effects in clinical studies. Analyses examined whether baseline cognitive function was associated with differences in treatment outcomes. Results: Baseline DSST did not predict placebo-adjusted treatment effects of vortioxetine on depressive symptoms (pooled Cohen d = -0.02, 95% CI = -0.12 to 0.07). Analyses of additional cognitive measures similarly did not predict placebo-adjusted treatment effects on depression (all 95% CI contained zero). Finally, analyses of trials with selective serotonin reuptake inhibitors (SSRIs)/serotonin and norepinephrine reuptake inhibitors (SNRIs) as active comparators also revealed no prediction of SSRI/SNRI adjusted treatment effects of vortioxetine on depression. Conclusions: These findings, taken together, suggest that cognitive function does not moderate depression outcomes in vortioxetine, with results comparable to other antidepressants.


Bringing Imaging Biomarkers Into Clinical Reality in Psychiatry

September 2024

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55 Reads

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3 Citations

JAMA Psychiatry

Importance Advancing precision psychiatry, where treatments are based on an individual’s biology rather than solely their clinical presentation, requires attention to several key attributes for any candidate biomarker. These include test-retest reliability, sensitivity to relevant neurophysiology, cost-effectiveness, and scalability. Unfortunately, these issues have not been systematically addressed by biomarker development efforts that use common neuroimaging tools like magnetic resonance imaging (MRI) and electroencephalography (EEG). Here, the critical barriers that neuroimaging methods will need to overcome to achieve clinical relevance in the near to intermediate term are examined. Observations Reliability is often overlooked, which together with sensitivity to key aspects of neurophysiology and replicated predictive utility, favors EEG-based methods. The principal barrier for EEG has been the lack of large-scale data collection among multisite psychiatric consortia. By contrast, despite its high reliability, structural MRI has not demonstrated clinical utility in psychiatry, which may be due to its limited sensitivity to psychiatry-relevant neurophysiology. Given the prevalence of structural MRIs, establishment of a compelling clinical use case remains its principal barrier. By contrast, low reliability and difficulty in standardizing collection are the principal barriers for functional MRI, along with the need for demonstration that its superior spatial resolution over EEG and ability to directly image subcortical regions in fact provide unique clinical value. Often missing, moreover, is consideration of how these various scientific issues can be balanced against practical economic realities of psychiatric health care delivery today, for which embedding economic modeling into biomarker development efforts may help direct research efforts. Conclusions and Relevance EEG seems most ripe for near- to intermediate-term clinical impact, especially considering its scalability and cost-effectiveness. Recent efforts to broaden its collection, as well as development of low-cost turnkey systems, suggest a promising pathway by which neuroimaging can impact clinical care. Continued MRI research focused on its key barriers may hold promise for longer-horizon utility.


Opportunities for use of neuroimaging in de-risking drug development and improving clinical outcomes in psychiatry: an industry perspective

August 2024

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29 Reads

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5 Citations

Neuropsychopharmacology: official publication of the American College of Neuropsychopharmacology

Neuroimaging, across positron emission tomography (PET), electroencephalography (EEG), and magnetic resonance imaging (MRI), has been a mainstay of clinical neuroscience research for decades, yet has penetrated little into psychiatric drug development beyond often underpowered phase 1 studies, or into clinical care. Simultaneously, there is a pressing need to improve the probability of success in drug development, increase mechanistic diversity, and enhance clinical efficacy. These goals can be achieved by leveraging neuroimaging in a precision psychiatry framework, wherein effects of drugs on the brain are measured early in clinical development to understand dosing and indication, and then in later-stage trials to identify likely drug responders and enrich clinical trials, ultimately improving clinical outcomes. Here we examine the key variables important for success in using neuroimaging for precision psychiatry from the lens of biotechnology and pharmaceutical companies developing and deploying new drugs in psychiatry. We argue that there are clear paths for incorporating different neuroimaging modalities to de-risk subsequent development phases in the near to intermediate term, culminating in use of select neuroimaging modalities in clinical care for prescription of new precision drugs. Better outcomes through neuroimaging biomarkers, however, require a wholesale commitment to a precision psychiatry approach and will necessitate a cultural shift to align biopharma and clinical care in psychiatry to a precision orientation already routine in other areas of medicine.


Figure 2. Clustering responses (TEPs) across stimulation conditions. a) TEP connectivity similarity matrix showing three communities in the discovery set. b) The targets are interspersed across cortical regions for the discovery set. The assigned communities of the validation set also show similar distributions. c) Channel TEPs averaged across targets of same community (Discovery set, average of absolute value) for each of the communities. The inset topoplots show the amplitude distribution at 43 ms, 191 ms, and 70 ms for community 1, 2, and 3 respectively.
Figure 4. Comparing structural and resting state measures across the communities of the discovery set for measures of a) myelination, b) cortical thickness, c) DWI based structural connectivity, d) rfMRI functional connectivity, e) Stimulation area, f) SUD scale values. Overall group comparisons were done with Kruskal-Wallis test, while post-hoc paired comparisons between communities were done with a ranksum test. Significant paired comparisons after Tukey correction are marked by a star (Pval < 0.05).
Figure 6. Significance of orientation modularity relative to null distribution for a) discovery set and b) validation set. The line plots show the observed modularity score (blue dashed line), along with the null distribution mean (black solid line) and 95% confidence intervals (grey shading). The values are sorted by ascending order of the significance of the observed value relative to null based on exact statistics (-log10P). The topoplots to the right show the significance values plotted spatially.
Densely sampled stimulus-response map of human cortex with single pulse TMS-EEG and its relation to whole brain neuroimaging measures

June 2024

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53 Reads

Large-scale networks underpin brain functions. How such networks respond to focal stimulation can help decipher complex brain processes and optimize brain stimulation treatments. To map such stimulation-response patterns across the brain non-invasively, we recorded concurrent EEG responses from single-pulse transcranial magnetic stimulation (i.e., TMS-EEG) from over 100 cortical regions with two orthogonal coil orientations from one densely-sampled individual. We also acquired Human Connectome Project (HCP)-styled diffusion imaging scans (six), resting-state functional Magnetic Resonance Imaging (fMRI) scans (120 mins), resting-state EEG scans (108 mins), and structural MR scans (T1- and T2-weighted). Using the TMS-EEG data, we applied network science-based community detection to reveal insights about the brain's causal-functional organization from both a stimulation and recording perspective. We also computed structural and functional maps and the electric field of each TMS stimulation condition. Altogether, we hope the release of this densely sampled (n=1) dataset will be a uniquely valuable resource for both basic and clinical neuroscience research.


Citations (64)


... The primary challenge lies in the lack of consistency in both the identified biotypes and the neuroimaging features that differentiate them, limiting their reliability and reproducibility across studies. (Beijers et al., 2020;Wen et al., 2024). ...

Reference:

Impact of Data Patterns on Biotype identification Using Machine Learning
Neuroimaging-based variability in subtyping biomarkers for psychiatric heterogeneity

Molecular Psychiatry

... Belief updates in the HGF are driven by prediction errors (PE)-the discrepancy between predictions and outcomes-and are modulated by the precision weights, where precision is defined as the inverse variance of belief distributions. This computational framework has already proven useful for understanding psychiatric conditions [12,32,33], aligning with proposals that understand clinical and subclinical conditions as manifestations of aberrant belief updating and predictive processing [34,35]. Integrating generative models of learning and inference, such as the HGF, with dynamic models of mood in BD could offer insights into how extreme changes in affective states and mood dynamically shape adaptive learning [16,[36][37][38][39]. ...

Towards a consensus roadmap for a new diagnostic framework for mental disorders
  • Citing Article
  • September 2024

European Neuropsychopharmacology

... It will be important for future work to evaluate how the combination of different biological, demographic, and clinical measures affects prediction of outcomes (128)(129)(130). Indeed, given the expense and complexity of fMRI, any promising FC-based prognostic biomarkers should demonstrate predictive capacity beyond that afforded by simpler measures (85,108,131,132). ...

Bringing Imaging Biomarkers Into Clinical Reality in Psychiatry
  • Citing Article
  • September 2024

JAMA Psychiatry

... Imaging can identify biomarkers that differentiate bipolar disorder from other psychiatric conditions, such as unipolar depression or schizophrenia, which often present overlapping symptoms (100). It also allows researchers to assess the impact of pharmacological treatments (e.g., mood stabilizers) and psychotherapy on brain function, providing insights into therapeutic mechanisms, predicting treatment outcomes response, and creating tailored interventions (101)(102)(103). is the author/funder, who has granted medRxiv a license to display the preprint in (which was not certified by peer review) preprint ...

Opportunities for use of neuroimaging in de-risking drug development and improving clinical outcomes in psychiatry: an industry perspective

Neuropsychopharmacology: official publication of the American College of Neuropsychopharmacology

... In our own work, we have required that candidate patient selection biomarkers be prospectively replicated in an independent cohort of patients receiving the study drug. This was already successful in two programs in depression [50,51]. Both of these have advanced to Phase 2b trials wherein patients are selected based on a combination of their diagnosis (major depressive disorder) and status on a biomarker test comprised of either performance in a test of memory or a specific EEG pattern (https://Clinicaltrials.Gov/Study/ NCT05712187, https://Clinicaltrials.Gov/Study/NCT05922878). ...

274. Identification and Prospective Replication of an EEG Biomarker for Predicting the Antidepressant Effect of ALTO-300 in Patients With Major Depression: Results From a Large Phase 2a Study
  • Citing Article
  • May 2024

Biological Psychiatry

... In our own work, we have required that candidate patient selection biomarkers be prospectively replicated in an independent cohort of patients receiving the study drug. This was already successful in two programs in depression [50,51]. Both of these have advanced to Phase 2b trials wherein patients are selected based on a combination of their diagnosis (major depressive disorder) and status on a biomarker test comprised of either performance in a test of memory or a specific EEG pattern (https://Clinicaltrials.Gov/Study/ NCT05712187, https://Clinicaltrials.Gov/Study/NCT05922878). ...

206. Identification and Prospective Replication of a Cognitive Biomarker for Predicting the Antidepressant Effect of ALTO-100, a Novel Pro-Plasticity Drug Candidate, in Patients With Major Depression: Results From a Large Phase 2a Study
  • Citing Article
  • May 2024

Biological Psychiatry

... The differences between molecular and functional target engagement measures can be seen in the development of drugs for cognitive impairment associated with schizophrenia (CIAS). For example, phosphodiesterase 4 inhibitors (PDE4i's) have long been of interest as a potential pro-cognitive mechanism due to their ability to elevate the key neuroplasticity-related second messenger cyclic adenosine monophosphate [1][2][3][4][5][6]. Along with desired pro-cognitive effects, increasing doses are associated with intolerance due to adverse events like nausea, vomiting and diarrhea. ...

437. Identification of Brain/Behavior-Based Pro-Cognitive Pharmacodynamic Effects for ALTO-101 in Healthy Volunteers: Results From a Randomized, Double-Blind Phase 1 Study
  • Citing Article
  • May 2024

Biological Psychiatry

... As for the underlying mechanisms explaining a dominant MD increase during inhibitory/excitatory balance, cellular shrinkage associated with neuronal hyperpolarization (Fraser & Huang, 2004) is one possible hypothesis, while reduced trans-membrane water transport in the hyperpolarized state could be at the origin of an increase in MK. However, as suggested by a recent study focusing on the rat and human striatum (Cerri et al., 2024), the polarity of the functional response as measured by BOLD cannot be solely explained by neuronal activity subcortically, i.e. positive BOLD = excitatory activity and negative BOLD = inhibitory activity, but rather by complex neurochemical feedforward mechanisms. A different neurochemical environment across the various brain regions involved in somatosensory processing and integration could also have an impact on water diffusivity, and thus lead to the observed MD and MK trends. ...

Distinct neurochemical influences on fMRI response polarity in the striatum

... The dorsolateral prefrontal cortex (DLPFC) is commonly considered a key target for TMS treatment of CUD. Recent evidence suggests that regions within the frontoparietal control and default mode networks may serve as additional potential targets for therapeutic intervention [37,38]. Experimentally examining the stimulation effects on different brain regions is impractical, time-consuming, and potentially harmful. ...

Discriminative functional connectivity signature of cocaine use disorder links to rTMS treatment response

Nature Mental Health

... By applying normative modeling to psychiatric disorders, researchers have quantified the neuroanatomical heterogeneity consistent with individual clinical manifestations and discovering potential psychiatric subtypes 15,[18][19][20] . Moreover, individualized deviations from normative range are strongly associated with treatment responses, suggesting its potential to guide the treatment of depression 21,22 . These studies provide new insights into the etiology of psychiatric disorders and may facilitate precision medicine. ...

Individual deviations from normative electroencephalographic connectivity predict antidepressant response
  • Citing Article
  • January 2024

Journal of Affective Disorders