Allen Hjelmfelt’s research while affiliated with Stanford University and other places

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Publications (24)


ChemInform Abstract: Measurements and Calculations of Oscillations and Phase Relations in the Driven Gas-Phase Combustion of Acetaldehyde
  • Article

December 2010

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4 Reads

Kim K. Tsujimoto

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Allen Hjelmfelt

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John Ross

Oscillations in light emission and species concentrations, are measured as periodic perturbations are simultaneously applied to the input rates of acetaldehyde and oxygen in the gas-phase combustion of acetaldehyde in a continuous-flow stirred tank reactor for conditions where the autonomous reaction itself is oscillatory. The experimental results are compared with the predictions of a five-variable thermokinetic model. We measure periodic responses in the fundamental entrainment band (ratio of frequency of perturbation to frequency of response equal to unity) for four different values of phase shift between the acetaldehyde and oxygen perturbation wave forms as we vary the frequency and amplitude of the external periodic perturbations. Outside of the entrainment bands we find quasiperiodic response. We determine the phases of the light emission and six species concentrations, as measured with a mass spectrometer, with respect to the periodic perturbation, the variation of these phases across the fundamental entrainment band for different values of reactant phase shift and for different amplitudes of perturbation, and the effects of the phase shift between the two input perturbations on the light emission response of the system for different frequencies of perturbation. Both the experiments and calculations predict a widening of the entrainment band with an increase in perturbation amplitude, and the same variation in bandwidths for the four values of reactant phase shift studied. The experiments and calculations also predict the same general trends in light phase and species phases (difference between the light emission and species concentrations with respect to the perturbing wave form) as the band is traversed for different amplitudes of perturbation and for different values of reactant phase shift.


Kinetic and Thermodynamic Information Derived from Electrochemical Measurements on Stationary States

April 1998

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10 Reads

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7 Citations

The Journal of Physical Chemistry B

Experiments are reported on the electrochemical displacement of the nonlinear minimum bromate reaction from stationary states far from equilibrium and from equilibrium. We measure the CeIV/CeIII electrode potential V at a given displacement effected by an imposed current clamp, I. The variation of the excess power (V - Vs)I, where Vs is the electrode potential at a stationary state, versus the imposed current is of the same form as the time derivative of an excess work, related in prior theoretical analyses to the thermodynamics of systems far from equilibrium.


Implementation of logic functions and computations by chemical kinetics

June 1995

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15 Reads

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64 Citations

Physica D Nonlinear Phenomena

We review our work on the computational functions of the kinetics of chemical networks. We examine spatially homogeneous networks which are based on prototypical reactions occurring in living cells and show the construction of logic gates and sequential and parallel networks. This work motivates the study of an important biochemical pathway, glycolysis, and we demonstrate that the switch that controls the flux in the direction of glycolysis or gluconeogenesis may be described as a fuzzy AND operator. We also study a spatially inhomogeneous network which shares features of theoretical and biological neural networks.


Experiments on Pattern Recognition by Chemical Kinetics

June 1995

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10 Reads

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69 Citations

The Journal of Physical Chemistry

Experiments on pattern recognition are: performed with a network of eight open, bistable, mass-coupled chemical reactors. A programming rule is used to determine the network connectivity in order to store sets of stationary patterns of reactors with low or high concentrations. Experiments show that these stored patterns can be recalled from similar initial patterns. To our knowledge, this is the first chemical implementation of a type of neural network computing device. The experiments on this small network agree with simulations and support the predictions of the performance-of large:networks.


Electrochemical experiments on thermodynamics at nonequilibrium steady states

September 1994

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3 Reads

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10 Citations

The Journal of Physical Chemistry

We present experiments which test for a nonequilibrium component to the electromotive force (emf) for a half-reaction involving species generated by a nonlinear reaction in a nonequilibrium steady state. The existence of this effect has been predicted by Keizer. The minimal bromate oscillatory reaction is run in a continuous flow stirred tank reactor under conditions which result in bistability. The reaction forms Ce(IV) from Ce(III) in a nonequilibrium steady state. This redox couple generates a voltage at a Pt electrode, relative to a reference electrode. Knowing the concentrations of the cerium species, this potential can be compared with that given by those concentrations of Ce(III) and Ce(IV) under equilibrium conditions, the Nernst equation. In the nonequilibrium stationary state we find deviations. We search for the source of these deviations. We do not find evidence for such explanations as mixed potentials but are unable to entirely rule them out. In the absence of such effects, the results are consistent with the existence of a non-Nernstian component of the emf for nonlinear systems in nonequilibrium steady states. 17 refs., 2 figs., 1 tab.


Stabilization of Unstable Spatial Structures in an Optically Bistable System

March 1994

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1 Read

The Journal of Physical Chemistry

We stabilize the unstable steady state of a spatially inhomogeneous optically bistable ZnSe interference filter and measure the average intensity of the light transmitted and reflected by the filter. We also image the spatial structures which are the stable and unstable steady states by spatially resolving the transmitted light. We further measure relaxations from the unstable branch to the two stable branches. Relaxations to the low-temperature branch occur homogeneously while relaxations to the high-temperature branch occur by the propagation of a front. The results are in agreement with calculated predictions of a deterministic model of this system. A comparison is also made to nonlinear reaction-diffusion systems.


Pattern recognition, chaos, and multiplicity in neural networks of excitable systems
  • Article
  • Full-text available

February 1994

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39 Reads

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56 Citations

Proceedings of the National Academy of Sciences

We study a neural network composed of excitable FitzHugh neurons that interact by diffusive type connections. Patterns of neural activity may be stored by a Hebbian rule. The stored patterns are recalled and given by the transient activity of the neurons after the network has been perturbed by related patterns and relaxes back to its steady state. Periodic perturbations of the network are repeated requests for computations and result in simple periodic, complex periodic, and chaotic responses and corresponding computational performances.

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Experimental Stabilization of Unstable Steady States in Oscillatory and Excitable Reaction Systems

January 1994

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6 Reads

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14 Citations

The Journal of Physical Chemistry

A feedback method is used to stabilize unstable stationary states in experiments with the chlorite-iodide reaction. The unstable stationary states occur in oscillatory and excitable regions of constraint space. Stabilization of unstable steady states provides information about these states and may be of practical importance. An analytical study of a model mechanism of this reaction is consistent with the experiments. This feedback method does not create new stationary states but stabilizes unstable stationary states present in the autonomous system. Unlike ''thermostat'' type methods, knowledge of the exact location of the unstable stationary states of the autonomous system is not required to implement this feedback method.


Tests of thermodynamic theory of relative stability in one-variable systems

September 1993

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11 Reads

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11 Citations

Schloegl's criterion for equistability of two stable stationary states of an inhomogeneous chemical kinetic system is valid only for single-variable cases dependent along a single spatial coordinate. We test the thermodynamic theory, developed in the preceding article for multivariable systems, in one dimension by comparison with calculations based on the deterministic reaction-diffusion equation for a cubic Schloegl model (single variable). This reaction-diffusion system is equivalent to a coupled multivariable system. The prediction of the thermodynamic theory of equistability approaches Schloegl's result as the length of the system increases. We also test the theory for an optically bistable (ZnSe) system which has been studied experimentally; in this system, temperature is the variable, and there is transport by thermal conduction. Again, we find that the prediction of the multivariable thermodynamic theory approaches the result from the deterministic kinetic equation as the length of the system increases. Further, the single-variable thermodynamic theory of relative stability of homogeneous steady states agrees with experiments and with the prediction of the deterministic equation.


Mass-coupled chemical systems with computational properties

July 1993

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10 Reads

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59 Citations

The Journal of Physical Chemistry

We simulate a pattern recognition device constructed from mass-coupled chemical reactors. Each reactor is an open system containing a bistable (iodate-arsenous acid) reaction. We store arbitrary patterns of high and low iodide concentrations in the network using a Hebb type rule. When the network is initialized with a pattern which is similar to a stored pattern, errors in the initial pattern are corrected and the similar stored pattern is recalled. When the network is initialized with a pattern which is not similar to a stored pattern, the network evolves to a homogeneous state which signals nonrecognition. The network is a programmable parallel computational device.


Citations (18)


... Part of the incoming light is absorbed by the filter and turned into heat, resulting in an increase in temperature. Two possible temperature profiles [25] The upper and lower stable stationary states decay differently on stopping the irradiation. The upper state is annihilated by fronts moving inward from the boundaries; the lower state by the simultaneous decay of all regions at T 3 toward T 0 . ...

Reference:

Thermodynamics and Fluctuations Far From Equilibrium
Tests of thermodynamic theory of relative stability in one-variable systems
  • Citing Article
  • September 1993

... This has been demonstrated , for example, for power production by methane combustion. [109] Another promising idea involves the operation of a reaction in a state where the spatial symmetry is broken. In this respect, we discussed that under certain conditions sustained patterns form that are composed of active and passive parts. ...

Effects of periodic variations of reactant influxes on the combustion of methane in power production
  • Citing Article
  • May 1989

... Two main mechanisms are used to explain the formation of oscillatory zoning in magnetite. Some consider that oscillatory zoning is a self-organized texture similar to Liesegang banding (Putnis et al., 1992) due to internal, near-equilibrium crystal growth (Ortoleva et al., 1987;Hjelmfelt and Ross, 1991;Ciobanu and Cook, 2004;Neumann et al., 2017), whereas others argue that cyclical fluctuations in external factors such as pressure, temperature, or fluid composition are responsible for the formation of oscillatory zoning (Shimazaki, 1998;Dare et al., 2015;Knipping et al., 2015;Huang et al., 2018). ...

Experiments on an oscillatory system close to equilibrium
  • Citing Article
  • May 1991

... Then in Section 6.3 we shall relate such measurements to the thermodynamic and stochastic theory of potentials governing fluctuations in electrochemical systems in stationary states far from, near to, and at equilibrium. We study again the minimal bromate reaction, where we measure the Ce(III)/Ce(IV) potential (for further details about the experimental setup see [51]). The contents of three reservoirs are pumped separately into a CSTR; the three reservoirs contain 0.00450 M Ce III , 0.0100 M BrO 2 − ...

Kinetic and Thermodynamic Information Derived from Electrochemical Measurements on Stationary States
  • Citing Article
  • April 1998

The Journal of Physical Chemistry B

... The Fokker Planck equation derived from the Langevin equation can be used to obtain a probability distribution for steady states of multistable systems. In the case of the arsenite-iodate reaction, the probabiiity distribution thus obtained corresponds well t o the experimentally determined probability of observing one of the two steady states when Aow rate noise is applied to the system [12]. ...

Experimental measurement of stochastic potentials and relative stabilities in a bistable chemical system
  • Citing Article
  • April 1993

... Consider a simple electrochemical cell (Hjelmfelt et al., 1991) consisting of two compartments separated by a semipermeable membrane only permeable to the uncharged species Y, as depicted in figure 1. The compartments are connected to reservoirs for X − and Z − . ...

Efficiency of power production in simple nonlinear electrochemical systems
  • Citing Article
  • July 1991

The Journal of Physical Chemistry

... Ross and co-workers [5] produced a theoretical construct suggesting the use of "chemical" reactor systems coupled by mass flow for implementing logic gates neural networks and finite-state machines. In further work Hjelmfelt et al. [16,17] simulated a pattern recognition device constructed from large networks of mass-coupled chemical reactors containing a bistable iodate-arsenous acid reaction. They encoded arbitrary patterns of low and high iodide concentrations in the network of 36 coupled reactors. ...

Mass-coupled chemical systems with computational properties
  • Citing Article
  • July 1993

The Journal of Physical Chemistry

... Ru(bpy) 3 2+/3+ , Fe 2+/3+ , Cu 1+/2+ , Mn 2+/3+ and so on121314 . The BZ reactions have been studied in innumerable contexts: for understanding dynamics of cellular processes [15,16], for examining thermodynamics of non-equilibrium systems [17], for generation of autonomous mechanical oscillation in soft gel [18,19], generation of oscillatory cell potential [20] and several others. These studies show that self oscillations can ensue also when diffusion of species couples with nonlinear chemical kinetics. ...

Electrochemical experiments on thermodynamics at nonequilibrium steady states
  • Citing Article
  • September 1994

The Journal of Physical Chemistry

... Estes sistemas podem ser descritos como consistindo de dois ritmos acoplados: o central com escala de tempo rápida, referente às oscilações observadas e um termo de evolução lenta de longo prazo ou drift [144] que conduz o sistema central através de diferentes regiões de parâmetros. Como consequência da componente de variação lenta, a análise do comportamento dinâmico é restrita a janelas temporais consideravelmente pequenas.Apesar da vasta literatura sobre o controle da dinâmica caótica[145][146][147][148] e estabilização de pontos fixos instáveis por meio de técnicas de controle de retroalimentação,[149][150][151] o estudo da compensação da variação em longo prazo na estabilização de séries temporais experimentais iniciou-se apenas recentemente.[152,153] Neste capítulo, é discutida a introdução de um procedimento empírico de estabilização de séries temporaisoscilatórias não-estacionárias em um experimento eletroquímico e a respectiva correlação com o drift. ...

Experimental Stabilization of Unstable Steady States in Oscillatory and Excitable Reaction Systems
  • Citing Article
  • January 1994

The Journal of Physical Chemistry