Alessandro De Luca’s research while affiliated with IRCCS Ospedale Casa Sollievo della Sofferenza and other places

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Publications (334)


On-Line Learning for Planning and Control of Underactuated Robots with Uncertain Dynamics
  • Preprint

January 2025

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11 Reads

Giulio Turrisi

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Marco Capotondi

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[...]

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Alessandro De Luca

We present an iterative approach for planning and controlling motions of underactuated robots with uncertain dynamics. At its core, there is a learning process which estimates the perturbations induced by the model uncertainty on the active and passive degrees of freedom. The generic iteration of the algorithm makes use of the learned data in both the planning phase, which is based on optimization, and the control phase, where partial feedback linearization of the active dofs is performed on the model updated on-line. The performance of the proposed approach is shown by comparative simulations and experiments on a Pendubot executing various types of swing-up maneuvers. Very few iterations are typically needed to generate dynamically feasible trajectories and the tracking control that guarantees their accurate execution, even in the presence of large model uncertainties.


Relevance of Next-Generation Sequencing in the Diagnosis of Thalassemia and Hemoglobinopathies: The Experience of Four Italian Diagnostic Hubs
  • Article
  • Full-text available

December 2024

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32 Reads

Genes

Thalassemias and hemoglobinopathies are among the most common genetic diseases worldwide and have a significant impact on public health. The decreasing cost of next-generation sequencing (NGS) has quickly enabled the development of new assays that allow for the simultaneous analysis of small nucleotide variants (SNVs) and copy number variants (CNVs) as deletions/duplications of α- and β-globin genes. Background/Objectives: This study highlighted the efficacy and rapid identification of all types of mutations in the α- and β-globin genes, including silent variants, using the Devyser Thalassemia NGS kit. Furthermore, we report the frequency of mutations identified in a total population of 2649 individuals recruited from four Italian Medical Genetics Laboratories. Methods: All samples were first hematologically characterized, and sequence analysis was conducted by using the Devyser Thalassemia NGS kit. All variants were also validated in an independent sample by a conventional molecular test. Results: A total of 1789 subjects were identified with genetic variants in the globin genes, of which 966 (53.9%) had variations in the β-gene, 480 (26.8%) had variations in the α-gene; and 307 (17.1%) had variations in both α- and β-genes. Variant analysis evidenced a heterogeneous mutation spectrum enriched with variants not usually observed in the Italian population. Conclusions: This study showed the high effectiveness and the rapid identification of all mutation types in both α- and β-globin genes, including silent variants. It should be emphasized that the NGS approach greatly shortens turnaround reporting times, overcoming the classic diagnostic flowchart which envisages multistep, subsequent, diagnostic approaches, often requiring long resolution times.

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Figure 1 Molecular spectrum of germline pathogenic LZTR1 variants. Represented from top to bottom are panels depicting the distribution of germline variants along the human LZTR1 gene in participants with CaLMs (current study), schwannomatosis (SWNTS), recessive NS (R-NS), and dominant NS (D-NS). Variants associated with SWNTS, R-NS, and D-NS, have been obtained from the following studies: SWNTS: 18,22-25,27,30-32 , R-NS: 7,20,26 , and D-NS. 19,20,41-45 Each number in a circle corresponds to the total number of individuals who carry a specific variant. The figure was prepared using the ProteinPaint application (https://proteinpaint.stjude.org/). Missense variants and in-frame indels are displayed above the gene, whereas variants expected to result in a truncated protein (eg, nonsense, frameshift, and
Table 1 Continued
Figure 2 Functional characterization of the LZTR1 mutant proteins. A. Expression levels and stability of a representative panel of CaLMs-associated LZTR1 mutants. Analysis of a recessive NS-causing LZTR1 mutant p.(Glu563Gln), shown in green, is also reported. Representative western blotting images show wild-type (WT) and mutant LZTR1 protein levels in transfected COS-1 cells, basally and after cycloheximide treatment. Blots were reprobed for glyceraldehyde-3-phosphate dehydrogenase (GAPDH) as loading control. Asterisks indicate statistically significant differences in comparisons with the WT protein (*, P < .05; **, P < .005; ***, P < .001; ****, P < .0001; two-way ANOVA followed by Dunnett's multiple comparison test). B. Subcellular localization of the transiently expressed LZTR1 mutants in COS-1 cells revealed by confocal microscopy analysis. Cells were stained with the anti-V5 antibody (green). Colocalization analysis was
Figure 3 Selected examples of cafécaf´café-au-lait macules (CaLMs) identified in individuals with heterozygous variants of the LZTR1 gene. Details of the CaLMs of patient 2.1, a 6-year-old boy with multiple CaLMs. Detail of 1 CaLM with smooth margins on the left arm (A) and 2 CaLMs with rough margins on the left leg (B). Evidence of CaLMs from patient 20.1, an 8-month-old girl with multiple CaLMs. Detail of CaLMs with smooth margins on the right leg (C) and 1 CaLM with rough margins on the back of the left leg (D). Detail of a CaLM with smooth margins from patient 10.1, a 5-month-old child (E). Evidence of the CaLMs of patient 21.1, a 9-year-old girl with multiple CaLMs. Detail of a CaLM on the neck and some CaLMs on the abdomen, highlighting the rough borders of the CaLMs (F-H).
Heterozygosity for loss-of-function variants in LZTR1 is associated with isolated multiple café-au-lait macules

August 2024

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112 Reads

Genetics in medicine: official journal of the American College of Medical Genetics


Defining the variant-phenotype correlation in patients affected by Noonan syndrome with the RAF1:c.770C>T p.(Ser257Leu) variant

June 2024

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40 Reads

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3 Citations

European Journal of Human Genetics

Hypertrophic cardiomyopathy (HCM) is the major contributor to morbidity and mortality in Noonan syndrome (NS). Gain-of-function variants in RAF1 are associated with high prevalence of HCM. Among these, NM_002880.4:c.770C > T, NP_002871.1:p.(Ser257Leu) accounts for approximately half of cases and has been reported as associated with a particularly severe outcome. Nevertheless, comprehensive studies on cases harboring this variant are missing. To precisely define the phenotype associated to the RAF1:c.770C > T, variant, an observational retrospective analysis on patients carrying the c.770C > T variant was conducted merging 17 unpublished patients and literature-derived ones. Data regarding prenatal findings, clinical features and cardiac phenotypes were collected to provide an exhaustive description of the associated phenotype. Clinical information was collected in 107 patients. Among them, 92% had HCM, mostly diagnosed within the first year of life. Thirty percent of patients were preterm and 47% of the newborns was admitted in a neonatal intensive care unit, mainly due to respiratory complications of HCM and/or pulmonary arterial hypertension. Mortality rate was 13%, mainly secondary to HCM-related complications (62%) at the average age of 7.5 months. Short stature had a prevalence of 91%, while seizures and ID of 6% and 12%, respectively. Two cases out of 75 (3%) developed neoplasms. In conclusion, patients with the RAF1:c.770C > T pathogenic variant show a particularly severe phenotype characterized by rapidly progressive neonatal HCM and high mortality rate suggesting the necessity of careful monitoring and early intervention to prevent or slow down the progression of HCM.


Figure 2.-Timeline of the CO-OLDer project.
Figure 3.-CO-OLDer countries.
The management of complicated colorectal cancer in older patients in a global perspective after COVID-19: the CO-OLDER WSES project

June 2024

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727 Reads

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1 Citation

Minerva Surgery

BACKGROUND: Colorectal (CRC) cancer is becoming a disease of the elderly. Ageing is the most significant risk factor for presenting CrC. early diagnosis of CrC and management is the best way in achieving good outcomes and longer survival but patients aged ≥75 years are usually not screened for CRC. This group of patients is often required to be managed when they are symptomatic in the emergency setting with high morbidity and mortality rates. Our main aim is to provide clinical data about the management of elderly patients presenting complicated colorectal cancer who required emergency surgical management to improve their care. MeTHODS: The management of complicated COlorectal cancer in OLDer patients (CO-OLDer; ClinicalTrials.gov iD: NCT05788224; evaluated by the local ethical committee CPP eST iii-France with the national number 2023-a01094-41) in the emergency setting project provides carrying out an observational multicenter international cohort study aimed to collect data about patients aged ≥75 years to assess modifiable risk factors for negative outcomes and mortality correlated to the emergency surgical management of this group of patients at risk admitted with a complicated (obstructed and perforated) CrC. The CO-OLDer protocol was approved by institutional review Board and released. each CO-OLDer collaborator is asked to enroll ≥25 patients over a study period from 1st January 2018 to 30th October 2023. Data will be analyzed comparing two periods of study: before and after the COViD-19 pandemic. a sample size of 240 prospectively enrolled patients with obstructed colorectal cancer in a 5-month period was calculated. The secured database for entering anonymized data will be available for the period necessary to achieve the highest possible participation. reSuLTS: One hundred eighty hospitals asked to be a CO-OLDer collaborator, with 36 potentially involved countries over the world.


Loss-of-function variants in ERF are associated with a Noonan syndrome-like phenotype with or without craniosynostosis

June 2024

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77 Reads

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3 Citations

European Journal of Human Genetics

Pathogenic, largely truncating variants in the ETS2 repressor factor (ERF) gene, encoding a transcriptional regulator negatively controlling RAS-MAPK signaling, have been associated with syndromic craniosynostosis involving various cranial sutures and Chitayat syndrome, an ultrarare condition with respiratory distress, skeletal anomalies, and facial dysmorphism. Recently, a single patient with craniosynostosis and a phenotype resembling Noonan syndrome (NS), the most common disorder among the RASopathies, was reported to carry a de novo loss-of-function variant in ERF. Here, we clinically profile 26 individuals from 15 unrelated families carrying different germline heterozygous variants in ERF and showing a phenotype reminiscent of NS. The majority of subjects presented with a variable degree of global developmental and/or language delay. Their shared facial features included absolute/relative macrocephaly, high forehead, hypertelorism, palpebral ptosis, wide nasal bridge, and low-set/posteriorly angulated ears. Stature was below the 3rd centile in two-third of the individuals, while no subject showed typical NS cardiac involvement. Notably, craniosynostosis was documented only in three unrelated individuals, while a dolichocephalic aspect of the skull in absence of any other evidence supporting a premature closing of sutures was observed in other 10 subjects. Unilateral Wilms tumor was diagnosed in one individual. Most cases were familial, indicating an overall low impact on fitness. Variants were nonsense and frameshift changes, supporting ERF haploinsufficiency. These findings provide evidence that heterozygous loss-of-function variants in ERF cause a "RASopathy" resembling NS with or without craniosynostosis, and allow a first dissection of the molecular circuits contributing to MAPK signaling pleiotropy.


Novel ATP2A2 Gene Mutation c.118G>A Causing Keratinocyte and Cardiomyocyte Disconnection in Darier Disease

May 2024

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20 Reads

Darier disease (DD) is an autosomal dominant disorder due to pathogenic variants of the ATP2A2 gene that causes an isolated skin manifestation based on keratinocyte disconnection and apoptosis. Systemic manifestations of DD have not been demonstrated so far, although a high incidence of neuropsychiatric syndromes suggests an involvement of the central nervous system. We report that the pathogenic ATP2A2 gene variant c.118G>A may cause cardiac involvement in patients with DD, consisting of keratinocyte and cardiomyocyte disconnection. Their common pathologic pathway, still unreported, was documented by both skin and left ventricular endomyocardial biopsies because cardiac dilatation and dysfunction appeared several decades after skin manifestations. Keratinocyte disconnection was paralleled by cardiomyocyte separation at the lateral junction. Cardiomyocyte separation was associated with cell disarray, sarcoplasmic reticulum dilatation, and increased myocyte apoptosis. Clinically, hyperkeratotic skin papules are associated with chest pain, severe muscle exhaustion, and ventricular arrhythmias that improved following administration of aminophylline, a phosphodiesterase inhibitor enhancing SERCA2 protein phosphorylation. Cardiac pathologic changes are similar to those documented in the skin, including cardiomyocyte disconnection that promotes precordial pain and cardiac arrhythmias. Phosphodiesterase inhibitors that enhance SERCA2 protein phosphorylation may substantially attenuate the symptoms.


Citations (67)


... In this issue, RAF1 Noonan syndrome is reported to have a severe phenotype -with prominent hypertrophic cardiomyopathy [13]. Dentici et al. report variants in ERF as a novel cause of Noonan syndrome, associated with craniosynostosis [14]. A further patient with a GTDC1 microdeletion is presented; providing further evidence this may be a novel neurodevelopmental condition [15]. ...

Reference:

Summer reading in EJHG
Loss-of-function variants in ERF are associated with a Noonan syndrome-like phenotype with or without craniosynostosis
  • Citing Article
  • June 2024

European Journal of Human Genetics

... Noonan syndrome has multiple different genetic associations. In this issue, RAF1 Noonan syndrome is reported to have a severe phenotype -with prominent hypertrophic cardiomyopathy [13]. Dentici et al. report variants in ERF as a novel cause of Noonan syndrome, associated with craniosynostosis [14]. ...

Defining the variant-phenotype correlation in patients affected by Noonan syndrome with the RAF1:c.770C>T p.(Ser257Leu) variant
  • Citing Article
  • June 2024

European Journal of Human Genetics

... This issue is addressed for the first time in [15], where a position control is developed for a tendondriven soft robot by using partial feedback linearization [16] and passivity theory [17]. More recently, [18] proposed a change of coordinate for a class of underactuated systems with CDAM, resulting in the so-called collocated form which greatly simplifies the development of control strategies. This approach is experimentally validated in [19] for a planar handed shearing auxetics robot, enabling effective regulation in the task space with a control law comprising an integral saturated error. ...

Input Decoupling of Lagrangian Systems via Coordinate Transformation: General Characterization and Its Application to Soft Robotics

IEEE Transactions on Robotics

... Polyurethanes, which comprise oligomeric polyols as soft segments and isocyanates and chain extenders as hard segments, possess variable and diverse structures, offering tunable physicochemical and physiological properties. In addition, great solvent resistance, biocompatibility, mechanical strength, and processability make the polymer "an ideal biomaterial" for various biomedical applications including implanting devices [1][2][3][4], artificial hearts [5][6][7], and scaffolds for tissue growth [8,9], and many other fields. Waterborne polyurethane (WPU), which is produced completely in aqueous media, has attracted considerable interest owing to its environmentally friendly production in aqueous media, obviating the need for organic solvents [10,11]. ...

Evaluating the Quality of Online Patient Information for Prepectoral Breast Reconstruction Using Polyurethane-Coated Breast Implants
  • Citing Article
  • November 2023

JPRAS Open

... In [6], a dynamic controller is proposed for the first time to regulate the shape and the force of a soft robot, motivating the subsequent research on model-based strategies for motion control in soft robotics as seen in [7], [8]. The effects of input saturation and external disturbances are taken into account in [9]. However, these approaches assume a fully-actuated model with a constant actuation matrix. ...

Model-Based Control for Soft Robots With System Uncertainties and Input Saturation

IEEE Transactions on Industrial Electronics

... Tactile interfaces, such as force sensors and haptic feedback devices, enable cobots to perceive and respond to variations in physical interactions [31]. Force sensors can detect unexpected resistance, triggering immediate cessation of movement to prevent collisions or accidents [32]. Haptic feedback devices provide physical sensations to human operators, conveying information about the cobot's state or impending actions [33]. ...

Collision Detection and Contact Point Estimation Using Virtual Joint Torque Sensing Applied to a Cobot
  • Citing Conference Paper
  • May 2023

... TMEM16C has a role in certain other cellular functions including the regulation of pain and heat processing (34). Previous studies have revealed that genetic mutations in TMEM16C can cause craniocervical dystonia in humans (35)(36)(37). TMEM16D also functions as a non-selective ion channel and a phospholipid scramblase (38), is mainly expressed in the brain and endocrine glands, and it can control the mean arterial pressure and secrete aldosterone (39). A mutation in the gene encoding TMEM16D can lead to neurological diseases, such as Alzheimer's disease (40). ...

A novel ANO3 variant in two siblings with different phenotypes
  • Citing Article
  • April 2023

Parkinsonism & Related Disorders

... Subsequent observations of its variants in other cohorts have considered it to be an important cause of HFM [5][6][7]. Moreover, SF3B2 and FOXI3 have been identified as causative genes from several cohorts, each explaining the etiology of approximately 1-3% of the probands [8][9][10]. In addition to these well-studied genes, several other genes are suggested to be associated with HFM, such as ZYG11B, EYA3, FRK, and CDC27 [11][12][13][14], yet their pathogenicity is pending confirmation. ...

FOXI3 pathogenic variants cause one form of craniofacial microsomia

... Enlarged spinal nerve roots are also features of specific pathogenic variants in neurofibromatosis 1 [12,13]. Neurofibromatosis type 1 also gives overactivation of the RAS-MAPK pathway. ...

Further case of enlarged spinal nerve roots in KRAS‐related Noonan syndrome