A. Paul Alivisatos’s research while affiliated with University of Chicago and other places

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Publications (501)


Figure 1. (A) Fraction of bound oleate ligands as a function of mole ratio determined by 1 H NMR from the reaction of oleic acid with indium phosphide quantum dots capped with myristate (C14H28O2), palmitate (C16H32O2), and stearate (C18H36O2) ligands. Reproduced or adapted with permission from ref 2. Copyright 2021 American Chemical Society. (B) Isothermal titration calorimetry data of the ligand exchange involving titrating oleic acid (C18H35O2) into indium phosphide quantum dots capped with myristate (C14H28O2), palmitate (C16H32O2), and stearate (C18H36O2) ligands. Reproduced or adapted with permission from ref 2. Copyright 2021 American Chemical Society.
Figure 2. (A) Fraction of bound oleate ligands as a function of mole ratio determined by 1 H NMR from the reaction of oleic acid with indium phosphide quantum dots capped with myristate (C14H28O2) with a simulated fit of the data using a one-site Langmuir like binding model. (B) Isothermal titration calorimetry data of the ligand exchange involving titrating oleic acid into indium phosphide quantum dots capped with myristate (C14H28O2) with a simulated fit of the data using a one-site Langmuir like binding model. (C) Fraction of bound oleate ligands as a function of mole ratio determined by 1 H NMR from the reaction of oleic acid with indium phosphide quantum dots capped with myristate (C14H28O2) with a simulated fraction of bound oleate ligands generated from the one-site Langmuir like binding model with the parameters generated from the fit of the isothermal titration calorimetry data for this reaction. (D) Binding enthalpy per exchange determined by combining the isothermal titration calorimetry and 1 H NMR data for the ligand exchange involving titrating oleic acid into indium phosphide quantum dots capped with myristate (C14H28O2) and palmitate (C16H32O2) ligands. Reproduced or adapted with permission from ref 2. Copyright 2021 American Chemical Society.
Figure 3. (A) Isothermal titration calorimetry data of the ligand exchange involving titrating metal halides into indium phosphide quantum dots. Reproduced or adapted with permission from ref 1. Copyright 2020 American Chemical Society. (B) Fraction of myristate bound ligands as a function of mole ratio determined by 1 H NMR from the reaction of metal halides with indium phosphide quantum dots. Reproduced or adapted with permission from ref 1. Copyright 2020 American Chemical Society.
Figure 4. (A) ITC simulated data of the enthalpy of the titration between oleic acid and myristate (C14H27O2), palmitate (C16H31O2), stearate (C18H35O2) capped indium phosphide quantum dots. Reproduced or adapted with permission from ref 2. Copyright 2021 American Chemical Society. (B) Oleate fractional coverage simulated data of the enthalpy of the titration between oleic acid and myristate (C14H27O2), palmitate (C16H31O2), stearate (C18H35O2) capped indium phosphide quantum dots. Reproduced or adapted with permission from ref 2. Copyright 2021 American Chemical Society. (C) ITC simulated data of the enthalpy of the titration between metal halides and indium phosphide quantum dots. Reproduced or adapted with permission from ref 1. Copyright 2020 American Chemical Society. (D) Oleate fractional coverage simulated data of the enthalpy of the titration between metal halides indium phosphide quantum dots. Reproduced or adapted with permission from ref 1. Copyright 2020 American Chemical Society.
Figure 5. (A) Plot the enthalpy of breaking inter-ligand tail interactions of the ligand exchange involving titrating zinc chloride into indium phosphide quantum dots capped with myristate (C14H27O2) and stearate (C16H35O2) ligands from isothermal titration calorimetry data using a modified Ising model against the calculated curvature of the quantum dots. Reproduced or adapted with permission from ref 4. Copyright 2024 American Chemical Society. (B) Plot the entropy of breaking inter-ligand tail interactions of the ligand exchange involving titrating zinc chloride into indium phosphide quantum dots capped with myristate (C14H27O2) and stearate (C16H35O2) ligands from isothermal titration calorimetry data using a modified Ising model against the calculated curvature of the quantum dots. Reproduced or adapted with permission from ref 4. Copyright 2024 American Chemical Society.

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Thermodynamics and Modeling of Collective Effects in the Organic Ligand Shell of Colloidal Quantum Dots
  • Article
  • Full-text available

December 2024

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8 Reads

Accounts of Chemical Research

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A Paul Alivisatos
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Automated Gold Nanorod Spectral Morphology Analysis Pipeline

December 2024

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14 Reads

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1 Citation

ACS Nano

Samuel P Gleason

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Jakob C Dahl

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A Paul Alivisatos

The development of a colloidal synthesis procedure to produce nanomaterials with high shape and size purity is often a time-consuming, iterative process. This is often due to quantitative uncertainties in the required reaction conditions and the time, resources, and expertise intensive characterization methods required for quantitative determination of nanomaterial size and shape. Absorption spectroscopy is often the easiest method for colloidal nanomaterial characterization. However, due to the lack of a reliable method to extract nanoparticle shapes from absorption spectroscopy, it is generally treated as a more qualitative measure for metal nanoparticles. This work demonstrates a gold nanorod (AuNR) spectral morphology analysis tool, called AuNR-SMA, which is a fast and accurate method to extract quantitative structural information from colloidal AuNR absorption spectra. To demonstrate the practical utility of this model, we apply it to three distinct applications. First, we demonstrate this model’s utility as an automated analysis tool in a high-throughput AuNR synthesis procedure by generating quantitative size information from optical spectra. Second, we use the predictions generated by this model to train a machine learning model to predict the resulting AuNR size distributions under specified reaction conditions. Third, we apply this model to spectra extracted from the literature where no size distributions are reported and impute unreported quantitative information on AuNR synthesis. This approach can potentially be extended to any other nanocrystal system where absorption spectra are size dependent, and accurate numerical simulation of absorption spectra is possible. In addition, this pipeline could be integrated into automated synthesis apparatuses to provide interpretable data from simple measurements, help explore the synthesis science of nanoparticles in a rational manner, or facilitate closed-loop workflows.


Schematic of the AuNP synthesis filtration and parsing pipeline, consisting of search-based and machine-learned modules. Orange circles indicate “hard” and “partial” cases where the search-based parser failed to parse a recipe and extracted a partially complete recipe, respectively. Green circles indicate final, manually validated datasets originating either from the search-based parser or from fine-tuned LLM. A total of 492 recipes (numbers without parantheses) contain complete numerical precursors amounts and 591 (numbers in parantheses) are without amounts
Decision tree of depth 3 for morphology classification. Note that all the precursor concentrations are preprocessed, in this case, transformed with log(10⁷[X] + 1) where [X] is the molar concentration of precursor X
2D precursor space with morphology classification obtained from logistic regression. 3-Nearest neighbor boundaries in this 2D space are also shown in lighter colors. All the precursor concentrations are preprocessed and transformed with 10⁷[X] + 1 where [X] is molar concentration of precursor X. ‘xAB’ represents ammonium bromide precursors excluding CTAB such as cetyltripropylammonium bromide (CTPAB), or didodecyldimethylammonium bromide (DDAB). Solid line circles or polygons indicate that all data points in them have the corresponding precursor set, while dashed line circles indicate that most of the data points in the circle have the corresponding precursor set. The full description of the axes is provided in the ESI.†
Aspect ratios of the synthesized AuNRs using AuCl4⁻, CTAB, and BH4⁻ in seed solution and growth solution with AuCl4⁻, CTAB, AgNO3, and ascorbic acid with (scatter in orange, 36 recipes) and without HCl (scatter in blue, 133 recipes). The scatter plot with error bars shows range (or variance) of AR indicated in each publication. Dark orange circles are ‘reference’ recipes that were not included in the original database and were manually extracted from Nikoobakht and El-Sayed.²³ Blue circles within a single column of [AgNO3] show duplicate recipes reproduced in different publications that had identical precursor final concentrations but reported nanorods with different (>20%) aspect ratios. Each scatter point is from a different publication except for Nikoobakht and El-Sayed. All data points are manually validated
Data-driven analysis of text-mined seed-mediated syntheses of gold nanoparticles

November 2024

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53 Reads

Gold nanoparticles (AuNPs) are widely used functional nanomaterials that exhibit adjustable properties depending on their shapes and sizes. Creating a comprehensive dataset of AuNP syntheses is useful for understanding how to control their morphology and size. Here, we employed search-based algorithms and fine-tuned the Llama-2 large language model to extract 492 multi-sourced seed-mediated AuNP synthesis recipes from the literature. With this dataset which we share online, we verified that the type of seed capping agent such as CTAB or citrate plays a crucial role in determining the morphology of the AuNPs, aligning with established findings in the field. We also observe a weak correlation between the final AuNR aspect ratio and silver concentration, although a large variance reduces the significance of this relationship. Overall, our work demonstrates the value of literature-based datasets in advancing knowledge in the field of nanomaterial synthesis for further exploration and better reproducibility.


Non-Monotonic Size-Dependent Exciton Radiative Lifetime in CsPbBr3 Nanocrystals

September 2024

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20 Reads

Lead-halide perovskite nanocrystals have recently emerged as desirable optical materials for applications such as coherent quantum light emitters and solid-state laser cooling due to their short radiative lifetime and near-unity photoluminescence quantum yield. Here, we investigate the effect of CsPbBr3 nanocrystal size on the radiative lifetime under ambient conditions. High-quality nanocrystals, with monoexponential time-resolved photoluminescence decay behaviors, unveil a non-monotonic trend in radiative lifetime. This non-monotonicity appears to reflect a behavior common among II-VI (CdSe) and perovskites semiconducting nanocrystals. We find that large nanocrystals in the weak quantum confinement regime exhibit long radiative lifetimes due to a thermally accessible population of dim states. Small nanocrystals within the strong quantum confinement regime, surprisingly, also show long radiative lifetimes, due however to a substantial reduction in oscillator strength. Nanocrystals in the intermediate quantum confinement regime displays the shortest radiative lifetime, as their oscillator strength is enhanced relative to particles in the strong confinement regime, but do not have sufficient low-lying dim states like the large particles to counteract this affect. These findings shed light on the impact of nanocrystal size on radiative lifetime and pave the way for tailored optical materials in various optical applications.






Figure S6: A few examples illustrating the projection of measured TEMs onto a normal distribution.
Figure S8: An example of repeat trials using the same synthesis condition with a stock solution of NaBH 4 in diglyme fresh and aged for 24 hours. The two conditions produce virtually identical spectra illustrating NaBH 4 's stability in diglyme.
AuNR-SMA: Automated Gold Nanorod Spectral Morphology Analysis Pipeline

July 2024

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44 Reads

The development of a colloidal synthesis procedure to produce nanomaterials of a specific size with high shape and size purity is often a time consuming, iterative process. This is often due to the time, resource and expertise intensive characterization methods required for quantitative determination of nanomaterial size and shape. Absorption spectroscopy is often the easiest method of colloidal nanomaterial characterization, however, due to the lack of a reliable method to extract nanoparticle shapes from absorption spectroscopy, it is generally treated as a more qualitative measure for metal nanoparticles. This work demonstrates a gold nanorod (AuNR) spectral morphology analysis (SMA) tool, AuNR-SMA, which is a fast and accurate method to extract quantitative information about an AuNR sample's structural parameters from its absorption spectra. We apply AuNR-SMA in three distinct applications. First, we demonstrate its utility as an automated analysis tool in a high throughput AuNR synthesis procedure by generating quantitative size information from optical spectra. Second, we use the predictions generated by this model to train a machine learning model capable of predicting the resulting AuNR size distributions from the reaction conditions used to synthesize them. Third, we turn this model to spectra extracted from the literature where no size distributions are reported to impute unreported quantitative information of AuNR synthesis. This approach can potentially be extended to any other nanocrystal system where the absorption spectra are size dependent and accurate numerical simulation of the absorption spectra is possible. In addition, this pipeline could be integrated into automated synthesis apparatuses to provide interpretable data from simple measurements and help explore the synthesis science of nanoparticles in a rational manner or facilitate closed-loop workflows.



Citations (68)


... Fine-tuned LLMs have also been used for constructing a materials knowledge graph, 38 and extracting nanoparticle synthesis procedures. 124 Given enough diverse data, it is also possible to fine-tune models for general information extraction (IE) applications. For example, Sainz et al. 125 built a model called GoLLIE to follow task-specific guidelines, improving zero-shot results on unseen IE tasks. ...

Reference:

From text to insight: large language models for chemical data extraction
Data-driven analysis of text-mined seed-mediated growth AuNP syntheses

... times higher than graphene supported on silicon wafer (SiO 2 /Si, Figure 12C). Alivisatos and coworkers employed a combination of isothermal titration calorimetry (ITC), 1 H qNMR spectroscopy, X-ray diffraction, and modified Ising model to study the ligand exchange of myristate-or stearatecapped indium phosphide (InP) quantum dots (QDs) by zinc chloride [58]. The ligand exchange involves breaking van der Waals interactions between aliphatic chains of the ligands and forming new bonds with Zn 2+ . ...

Evidence and Structural Insights into a Ligand-Mediated Phase Transition in the Solvated Ligand Shell of Quantum Dots

ACS Nano

... Since many synthesis studies focus mainly on the final product, nucleation, growth, and potential intermediate phases are only vaguely understood 31 . For example, it is widely believed that intermediate clusters, micelles, or complexes play a decisive role in regulating reaction kinetics by binding reactants, which are slowly released as monomers 8,16,32,33 however their dimensions are rarely reported unambiguously 34 . Moreover, the labile ligand binding in LHPs potentially promotes nonclassical growth mechanisms like oriented attachment, fusion, and recrystallisation of intermediates, yet the exact mechanisms at work are elusive 33,35 . ...

Precursor Chemistry of Lead Bromide Perovskite Nanocrystals
  • Citing Article
  • August 2024

ACS Nano

... PL and quantum yields are measurable quantities which are defined through transition rates both radiative and non-radiative [25]. In particular, the radiative rate is the fundamental parameter which needs to be optimized [26]. For examples, fast radiative rate is required for high-speed communication [27] whereas slow radiative rate is needed to improve photovoltaic and photocatalysis process [28]. ...

Quantitative Comparison of Recombination Rates of Core/Shell Quantum Dots in Colloidal Solutions and Self-Assembled Monolayer Superlattices
  • Citing Article
  • July 2024

The Journal of Physical Chemistry C

... A few previous studies have explored the introduction of impurities in NC host materials, such as Mn 2+ in CdTe NCs [31] and Er 3+ in CeO 2 NCs [32]. Recently, we reported the synthesis and optical characterization of copper-doped ZnS (ZnS:Cu) NCs, which feature red emission due to Cu Zn -V S defects, i.e., where a copper atom replaces a zinc atom adjacent to a sulfur vacancy [33]. ...

Coherent Erbium Spin Defects in Colloidal Nanocrystal Hosts

ACS Nano

... This article focuses on using liquid phase TEM to reveal dynamic transformations of nanoscale materials with distinct morphologies, such as the formation of one-dimensional (1D) nanowire materials through directional attachment [16,21,22], and the growth of two-dimensional (2D) materials [23−25]; the impact of heterogeneity and defects on nanoscale transformation pathways, for example, ripening, etching, growth and phase transition of nanomaterials [12,26,27], and solid-liquid interfaces in both chemical and electrochemical processes [11, 18, 28−30]. These studies highlight our efforts toward revealing unseen nanoscale transformation pathways in complex systems by direct imaging and exploration of nanoscale non-equilibrium processes. ...

Unveiling Corrosion Pathways of Sn Nanocrystals through High-Resolution Liquid Cell Electron Microscopy
  • Citing Article
  • January 2024

Nano Letters

... Since many synthesis studies focus mainly on the final product, nucleation, growth, and potential intermediate phases are only vaguely understood 31 . For example, it is widely believed that intermediate clusters, micelles, or complexes play a decisive role in regulating reaction kinetics by binding reactants, which are slowly released as monomers 8,16,32,33 however their dimensions are rarely reported unambiguously 34 . Moreover, the labile ligand binding in LHPs potentially promotes nonclassical growth mechanisms like oriented attachment, fusion, and recrystallisation of intermediates, yet the exact mechanisms at work are elusive 33,35 . ...

Scientific Machine Learning of 2D Perovskite Nanosheet Formation
  • Citing Article
  • October 2023

Journal of the American Chemical Society

... For example, Dagdelen et al. developed a training pipeline for GPT-3 to extract information from scientic texts about crystalline materials as structured JSON 29 and Walker et al. present an iterative scheme to ne-tune LLMs for extracting structured data of gold nanorods synthesis. 30 Recent studies by Zhong et al. explored ne-tuned LLMs for reaction data extraction from literature in PDF format. 31,32 The output of these models provides a reasonable coverage of reaction information, with the exception of quantity information. ...

Extracting Structured Seed-Mediated Gold Nanorod Growth Procedures from Scientific Text with LLMs

... These file I/O bottlenecks present a dual challenge: they slow down data transfer and analysis and also restrict the types of experiments that can be conducted. For instance, they preclude the possibility of running automated experiments over extended periods (Pattison et al., 2023), because human intervention is required to manage data transfer and counting once the local eight TB file system is full. Starting from the data receivers (a), the streaming approach employs ZeroMQ sockets to bypass raw file disk storage at NCEM, enabling direct RAM-to-RAM transfer. ...

Advanced Techniques in Automated High Resolution Scanning Transmission Electron Microscopy

... Due to the narrow emission linewidth of lasers, they offer a wider color gamut [4−6] than traditional display technologies, allowing for more precise and saturated color reproduction, which leads to sharper images and greater contrast [7,8]. Additionally, laser displays are more energy-efficient since lasers can generate the required wavelengths directly without relying on filters or backlighting, thus reducing energy losses [9]. When combined with semiconductor nanocrystal-based lasers, which offer tunable emission and high color purity, the result is a display technology capable of delivering superior visual performance, cost-effective manufacturing, and versatile design options [8, 10−13]. ...

Luminescent concentrator design for displays with high ambient contrast and efficiency

Nature Photonics