William Parton’s research while affiliated with Colorado State University and other places

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Publications (39)


Figure 3. Traditional multi-model intercomparison project (MIP) workflow versus Community Cyberinfrastructure. Historically, each model and associated experts/infrastructure individually engage with MIPs. While stimulating model improvement is intended, it is not inherently nor readily available in traditional MIPs. In a Community Cyberinfrastructure, by contrast, both standardization of inputs and outputs and troubleshooting are included in the process of embedding each individual model in the system. MIP analyses are a use case, rather than the single purpose of the workflow, leverage ongoing Community
Beyond Modeling: A Roadmap to Community Cyberinfrastructure for Ecological Data-Model Integration
  • Preprint
  • File available

January 2020

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517 Reads

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3 Citations

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Anthony K. Gardella

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In an era of rapid global change, our ability to understand and predict Earth's natural systems is lagging behind our ability to monitor and measure changes in the biosphere. Bottlenecks in our ability to process information have reduced our capacity to fully exploit the growing volume and variety of data. Here, we take a critical look at the information infrastructure that connects modeling and measurement efforts, and propose a roadmap that accelerates production of new knowledge. We propose that community cyberinfrastructure tools can help mend the divisions between empirical research and modeling, and accelerate the pace of discovery. A new era of data-model integration requires investment in accessible, scalable, transparent tools that integrate the expertise of the whole community, not just a clique of ‘modelers’. This roadmap focuses on five key opportunities for community tools: the underlying backbone to community cyberinfrastructure; data ingest; calibration of models to data; model-data benchmarking; and data assimilation and ecological forecasting. This community-driven approach is key to meeting the pressing needs of science and society in the 21st century.

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Figure 3. (a) Temperature anomalies and (b) precipitation anomalies, for the months of November to March, which have occurred during past El Niño events (1971-2003) versus long-term averages (1971-2000). Adapted using publicly available maps at: https://www.esrl.noaa.gov/psd/enso/compare/.
Figure 4. An example set of Grass-Cast maps, similar to those a rancher or rangeland manager would see on the GrassCast website, http://grasscast.agsci.colostate.edu/. This example was produced on May 1, 2018, as an early forecast for the 2018 growing season. It was updated every two weeks thereafter, through July 31, 2018. See the text box above the maps to learn how to correctly interpret the 3 panels (left, middle, right). Next, see the color-scale inside each panel, which explains for each county whether it is forecasted to have more or less pounds per acre of rangeland vegetation than the average of its 34-year production history. Finally, see the text box below the maps to learn whether one panel is more likely to occur than others, or if they are equally likely. For a demonstration of one way a rancher could use Grass-Cast to inform their stocking decisions, see Voth (2018).
Flexible stocking with Grass-Cast: A new grassland productivity forecast to translate climate outlooks for ranchers

March 2019

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140 Reads

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26 Citations

Highly variable precipitation in western U.S. rangelands makes it challenging for ranchers to match animal demand to forage supply. Flexible stocking can enhance matching, thereby reducing losses during drought and increasing profit during wet years. Yet the benefits of flexible stocking depend on the availability of highly accurate and applicable seasonal climate outlooks. The availability and skill of seasonal climate outlooks is summarized, revealing shortcomings that make flexible stocking less practical and less beneficial. A new grassland productivity forecast, Grass-Cast, can facilitate flexible stocking by translating climate outlooks into more applicable summer-forage outlooks, and its strengths and limitations are described.


Simulated net greenhouse gas (GHG) balances (t CO2-eq. ha⁻¹ year⁻¹) related to changes from the baseline management in (a) soil organic carbon (SOC) stock (carbon dioxide, CO2 removal), (b) methane (CH4) and (c) nitrous oxide (N2O) emissions (all are in t CO2-eq. ha⁻¹ year⁻¹) for 64 districts in Bangladesh. Each point represents the change in one district (n = 64). AWD: Alternate wet and drying, Rsd_RT: 15% residue removal with reduced tillage, CD: Cow dung, IM: Integrated management practices. Note that the scale of both x and y axes differ.
Simulated net greenhouse gas (GHG) balances with (a) yield in two crop growing seasons and (b) GHG emission intensity under different management activity in Bangladeshi double rice cropland soil. Each point represents the change in one district (n = 64). Y_IR: Yield for irrigated rice, Y_RR_Yield for rainfed rice. AWD: Alternate wet and drying, Rsd_RT: 15% residue removal with reduced tillage, CD: cow dung, IM: Integrated management practices.
District map of Bangladesh showing values of (a) annual soil organic carbon (SOC) stock changes (Carbon dioxide, CO2 removal), (b) annual average change in methane (CH4) emissions, (c) annual average change in nitrous oxide N2O emissions and (d) annual net greenhouse (GHG) balances under integrated management (IM) for the period of 1996–2015. IM practices include a combination of AWD, Rsd_RT, cow dung with 40% less N, coupled with 15% less mineral N fertilizer compared to the current rate. AWD: Alternate wet and drying, Rsd_RT: 15% residue removal with reduced tillage. CD: cow dung. The unit are t CO2-eq. ha⁻¹ year⁻¹.
Map of Bangladesh showing (a) annual soil organic carbon (SOC) stock changes (Tg carbon dioxide CO2-eq. year⁻¹) and (b) average net greenhouse gas (GHG) balances (Tg CO2-eq. year⁻¹) from total rice harvested area under integrated management practices (IM) for the period 1996–2015. Unit and legend for Figure 4b is similar to Figure 4a.
Annual balances (Tg carbon dioxide, CO2-eq. year⁻¹) considering soil organic carbon (SOC) stock changes (represented as a CO2 removal), methane and nitrous oxide emissions under the four selected mitigation scenarios in the harvested rice area of Bangladesh. Negative values indicate an increase in SOC sequestration or a decrease in net greenhouse gas (GHG) emissions; positive values indicate a decrease in SOC sequestration or an increase in net GHG emissions. AWD: Alternate wet and drying, Rsd_RT: 15% residue removal with reduced tillage, CD: Cow dung, IM: Integrated management practices.
Model Based Regional Estimates of Soil Organic Carbon Sequestration and Greenhouse Gas Mitigation Potentials from Rice Croplands in Bangladesh

July 2018

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614 Reads

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35 Citations

Rice (Oryza sativa L.) is cultivated as a major crop in most Asian countries and its production is expected to increase to meet the demands of a growing population. This is expected to increase greenhouse gas (GHG) emissions from paddy rice ecosystems, unless mitigation measures are in place. It is therefore important to assess GHG mitigation potential whilst maintaining yield. Using the process-based ecosystem model DayCent, a spatial analysis was carried out in a rice harvested area in Bangladesh for the period 1996 to 2015, considering the impacts on soil organic carbon (SOC) sequestration, GHG emissions and yield under various mitigation options. An integrated management (IM, a best management practice) considering reduced water, tillage with residue management, reduced mineral nitrogen fertilizer and manure, led to a net offset by, on average, −2.43 t carbon dioxide equivalent (CO2-eq.) ha⁻¹ year⁻¹ (GHG removal) and a reduction in yield-scaled emissions intensity by −0.55 to −0.65 t CO2-eq. t⁻¹ yield. Under integrated management, it is possible to increase SOC stocks on average by 1.7% per year in rice paddies in Bangladesh, which is nearly 4 times the rate of change targeted by the “4 per mille” initiative arising from the Paris Climate Agreement.


Crop Biomass, Soil Carbon, and Nitrous Oxide as Affected by Management and Climate: A DayCent Application in Brazil

July 2017

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100 Reads

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24 Citations

A current national research priority in Brazil is the assessment of potential climate change impacts in agriculture. In this study, the DayCent model was used to predict changes in crop biomass, soil C stocks, and N2O fluxes of a major agricultural area in Brazil. The model was calibrated and validated using datasets from 30-yr-old experiments. Simulations of current and alternative management practices to 2100 using IPCC climate scenarios A2 and B1 were conducted. Predicted crop biomass increases ranged from 5% (sorghum [B1]) to 65% (soybean [A2]). DayCent simulated higher soil organic carbon stocks in the wheat–soybean system (VAL1) than in the wheat–soybean–vetch–sorghum system (VAL2) in both climate scenarios. Soil organic carbon accumulation by 2100 (±16 Mg C ha⁻¹ above current 46 Mg C ha⁻¹) was forecast in cropping systems with pastures (Cynodon sp.), regardless of the climate scenario. Daily N2O fluxes were underestimated by ±41% (0.85 g N–N2O ha⁻¹ d⁻¹) in VAL1 and overestimated by 17.5% (0.28 g N–N2O ha⁻¹ d⁻¹) in VAL2. Cumulative N2O fluxes produced mixed results, which were 29% lower than observed in VAL1 and 5% higher in VAL2 but within the range of values reported in other greenhouse gas studies in southern Brazil. Simulations of N2O fluxes to 2100 with IPCC climate change scenarios B1 and A2 in southern Brazilian indicated higher annual fluxes across the alternative treatments tested in comparison to current fluxes. According to model predictions, climate change would lead to larger relative increases in N2O emissions from no-tillage (27% in B1 to 41% in A2), but these enhanced fluxes would still be lower than those from tillage by approximately 25%. © Soil Science Society of America, 5585 Guilford Rd., Madison WI 53711 USA. All Rights reserved.


GPPpaper ERyan FINAL 9Dec2016 SI

January 2017

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63 Reads



Fig. 1. Potential greenhouse gas emissions in metric tons of CO 2 e per hectare over a 20-year project period for all unprotected grassland across The Nature Conservancy (TNC) project area. 
Table 1 . Stocking rate recommendations for 1400 lb cows in cowsÁha À1 Ámonth À1 by county for the 14 focal counties in central North Dakota and South Dakota (Manske 2004, Mousel 2013) and associated enteric methane emissions, expressed as metric tons of carbon dioxide equivalents.
Potential carbon dioxide emission reductions from avoided Grassland conversion in the northern Great Plains

December 2016

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293 Reads

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23 Citations

Protection of lands threatened with conversion to agriculture can reduce carbon emissions. Until recently, most climate change mitigation incentive programs for avoided conversion have focused on forested ecosystems. We applied the Avoided Conversion of Grasslands and Shrublands v.1.0 (ACoGS) methodology now available through the American Carbon Registry to a threatened region of grasslands in the northern Great Plains. For all soil types across 14 counties in North and South Dakota, we used the DAYCENT model calibrated to the study area to quantify the difference in CO2 and N2O emissions under a cropping and a protection scenario, and we used formulas in the ACoGS methodology to calculate CH4 emissions from enteric fermentation under the protection scenario. We mapped the resulting GHG emissions across the entire project area. Emissions averaged 51.6 tCO2e/ha over 20 years, and with a 31% reduction for leakage and uncertainty from the ACoGS methodology, carbon offsets averaged 35.6 tCO2e/ha over 20 years. Protection of 10% of the 2.1 million unprotected ha in the project area with the highest emissions would reduce emissions by 11.7 million tCO2e over 20 years (11% of the total emissions from all unprotected grassland) and avoid a social cost of $430 million worth of CO2 emissions. These results suggest that carbon offsets generated from avoided conversion of grasslands can meaningfully contribute to climate mitigation and grassland conservation objectives.


Importance of Early Season Conditions and Grazing on Carbon Dioxide Fluxes in Colorado Shortgrass Steppe

June 2016

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45 Reads

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34 Citations

Rangeland Ecology & Management

Understanding the influence of grazing management and environmental drivers on net ecosystem exchange of CO2 (NEE) is essential for optimizing carbon (C) uptake in rangelands. Herein, using 15 treatment-years (two 3-yr experiments, one with three grazing treatments, the other two) and Bowen ratio flux towers, we evaluated the influence of grazing intensity, soil water content (SWC), and plant cover (Normalized Difference Vegetation Index, or NDVI) on NEE in Colorado shortgrass steppe. Among several soil water and plant cover traits evaluated over 6-yr, early season (April, DOY 91–120) SWC and early season (DOY 130) NDVI were most highly correlated with NEE (− 0.96 and − 0.98, respectively) during the second quarter (April to June) of the year and also over the entire growing season (April to September; − 0.97 and − 0.96). Due to the strong effect of early-season SWC, an average of 166 g m− 2 CO2 were lost in 2 yr with dry spring weather, compared with an average annual uptake of 218 g m− 2 CO2 in 4 yr with more abundant early-season precipitation and plant cover. Grazing effects on NEE were also apparent. In one experiment, moderate grazing resulted in annual CO2 uptake of 267 g m− 2 CO2 over 3 yr compared with essentially zero NEE in heavily grazed pasture. However, that treatment difference in annual NEE was only half that experienced between dry and wet years. Similar trends were observed in a second experiment, although results were insignificant. Results suggest that the recommended moderate grazing intensity for the Colorado shortgrass steppe is near optimal for CO2 uptake under season-long continuous grazing, with annual climatic variability sometimes being more influential. To enhance C sequestration in the western Great Plains of North America, grazing management strategies should emphasize flexible and adaptive practices that consider early-season SWC and promote vegetation cover during the key early spring growth period.



Fig. 1. Three modeling components toward realistic projections of soil C dynamics. Model  
Fig. 3 Consensus on recommended top 10 processes, databases, and modeling techniques to  
Towards More Realistic Projections of Soil Carbon Dynamics by Earth System Models

December 2015

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1,195 Reads

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419 Citations

Soil carbon (C) is a critical component of Earth system models (ESMs) and its diverse representations are a major source of the large spread across models in the terrestrial C sink from the 3rd to 5th assessment reports of the Intergovernmental Panel on Climate Change (IPCC). Improving soil C projections is of a high priority for Earth system modeling in the future IPCC and other assessments. To achieve this goal, we suggest that (1) model structures should reflect real-world processes, (2) parameters should be calibrated to match model outputs with observations, and (3) external forcing variables should accurately prescribe the environmental conditions that soils experience. Firstly, most soil C cycle models simulate C input from litter production and C release through decomposition. The latter process has traditionally been represented by 1st-order decay functions, regulated primarily by temperature, moisture, litter quality, and soil texture. While this formulation well captures macroscopic SOC dynamics, better understanding is needed of their underlying mechanisms as related to microbial processes, depth-dependent environmental controls, and other processes that strongly affect soil C dynamics. Secondly, incomplete use of observations in model parameterization is a major cause of bias in soil C projections from ESMs. Optimal parameter calibration with both pool- and flux-based datasets through data assimilation is among the highest priorities for near-term research to reduce biases among ESMs. Thirdly, external variables are represented inconsistently among ESMs, leading to differences in modeled soil C dynamics. We recommend the implementation of traceability analyses to identify how external variables and model parameterizations influence SOC dynamics in different ESMs. Overall, projections of the terrestrial C sink can be substantially improved when reliable datasets are available to select the most representative model structure, constrain parameters, and prescribe forcing fields.


Citations (31)


... It is therefore important to understand the magnitude and drivers of variation in rooting depth distribution and to accurately represent it in models of soil biogeochemistry. Despite this, and although modelling different rooting depths can have stronger effects on biogeochemical pools than increases in temperature or precipitation (Daly et al., 2000), root representation in models remains rudimentary (Smithwick et al., 2014;Warren et al., 2015). This is because roots are notoriously difficult to study and root data, such as depth distribution of root biomass, thus remains scarce. ...

Reference:

Arctic rooting depth distribution influences modelled carbon emissions but cannot be inferred from aboveground vegetation type
DYNAMIC SIMULATION OF TREE–GRASS INTERACTIONS FOR GLOBAL CHANGE STUDIES
  • Citing Article
  • April 2000

... Applications such as Grasscast [37,38] or Fuelcast [18] provide forecasts of expected rangeland productivity within the current growing season, while the Dynamic Global Vegetation Model (DGVM) MC2 [39,40] projects rangeland production using climatechange scenarios. While improved projections of productivity will serve to only increase the utility of the approach developed here, more comprehensive data regarding understory forage performance that are collected by managers and stakeholders on the ground will enable greater accuracy overall in both forested and non-forested landscapes. ...

Flexible stocking with Grass-Cast: A new grassland productivity forecast to translate climate outlooks for ranchers

... Compared to other production activities, carbon emissions from crop production are significantly influenced by natural attributes in addition to energy use (Brewer and Responsible Editor: V.V.S.S. Sarma Gaudin 2020; Zafeiriou and Azam 2017). Activities such as using agricultural materials (Xu and Lan 2017), cultivating rice (Begum et al. 2018), burning straw Brankatschk and Finkbeiner 2017), and managing soil (Begum et al. 2018;Hamrani et al. 2020;Saha et al. 2021) can all lead to greenhouse gas emissions. Carbon emissions are also impacted by planting structure and scale (Tian et al. 2021). ...

Model Based Regional Estimates of Soil Organic Carbon Sequestration and Greenhouse Gas Mitigation Potentials from Rice Croplands in Bangladesh

... It has been used for reporting N2O emissions from mineral soils, soil organic carbon (SOC) stock changes and CH4 emissions from rice cultivation in flooded soils (US-EPA, 2023). It has also been used to simulate the impact of different management practices or climate change scenarios on GHG emissions in different regions of the world, including Europe (Álvaro-Fuentes et al., 2017;Cheng et al., 2014;Lugato et al., 2018;Weiler et al., 2017). It stems from the CENTURY model that was broadly used to simulate SOC dynamics (Parton et al., 1987;Parton et al., 1998). ...

Crop Biomass, Soil Carbon, and Nitrous Oxide as Affected by Management and Climate: A DayCent Application in Brazil
  • Citing Article
  • July 2017

... Soil invertebrates comprise a variety of taxa (e.g., mites, springtails, earthworms, enchytraeids, nematodes, isopods), which are involved in organic matter decomposition, nutrient cycling, and the maintenance of soil structure (Frouz 2018;Wolters 2001). Altogether, soil invertebrates are important indicators of soil quality, fertility, and degradation (Guerra et al. 2021;Koch et al. 2013), and changes in soil dynamics can originate shifts in the density and diversity of its communities (Zhang et al. 2022;Zhu et al. 2023). In line with the findings of Mallen-Cooper et al. (2022), three key mechanisms may trigger functional disruptions for soil invertebrates in eucalypt monoculture plantations. ...

Soil Security: Solving the Global Soil Crisis

... Brantley et al. [17] examined the suitability of parcels for AC projects in North Carolina and found that the parcels at higher conversion risk and conservation values are more promising for AC projects. Ahlering et al. [20] used scenario modeling simulation to estimate the GHG emission reductions associated with AGC projects in the northern Great Plains and found that the AGC projects could lead to a reduction of 11.7 million tCO2e over a 20-year period. Studies have also shown that IFM projects can potentially yield significant carbon storage benefits if effective management practices (e.g., extending rotation lengths, reducing harvest intervals and intensity, and managing stand density) are implemented [21][22][23]. ...

Potential carbon dioxide emission reductions from avoided Grassland conversion in the northern Great Plains

... This could influence farm area management strategies by seeking an equilibrium between the area dedicated to grazing and that dedicated to fodder stock production, with the objective of supporting the higher load that can be assumed from the expected increase in the spring period. The results obtained in S.Ilario, where higher CO 2 concentration and application of summer irrigation determined higher AGB and lower NEE values (Table 4), indicated that irrigation practice in future climates may even enhance the capability of grasslands for carbon fluxes while increasing the relevant carrying capacity (Ryan et al., 2017;Doughty et al., 2018;Brilli et al., 2019Brilli et al., , 2023. However, the use of water resources should be carefully considered in the view of its limited supply, the high costs and the extra-agriculture uses. ...

Gross primary production responses to warming, elevated CO2, and irrigation: Quantifying the drivers of ecosystem physiology in a semiarid grassland

... Over large spatial regions, both remote sensing data and ecosystem models can be used to evaluate the response of grassland plant productivity to annual variations in climate. Remote sensing data tracks vegetation dynamics across the globe, and products derived from spectral indices, such as the normalized difference vegetation index (NDVI) have been used to estimate biomass (Morgan et al 2016) and net primary productivity (NPP) (Hermance et al 2015, Chen et al 2019, Hartman et al 2020, Jones et al 2021. Remote sensing estimates of biomass derived from remotely sensed data have been validated against on the ground measurements (Paruelo et al 1997. ...

Importance of Early Season Conditions and Grazing on Carbon Dioxide Fluxes in Colorado Shortgrass Steppe
  • Citing Article
  • June 2016

Rangeland Ecology & Management

... 3 Agroecosystematmosphere GHG exchanges are not simply limited to the absorption of CO 2 from growing the agricultural crop but also include the cycling of carbon within the soil, a complex phenomenon that depends on numerous factors (e.g., the initial stock of carbon present under the land, anthropogenic agricultural practices, and climate conditions). [4][5][6] The importance of quantifying GHG emissions from soil has been highlighted in the literature. [7][8][9] There is a simple notion of net ecosystem exchange (NEE), which covers all ecosystem carbon exchanges and presents the exchange of CO 2 between the ecosystem and the atmosphere directly. ...

Towards More Realistic Projections of Soil Carbon Dynamics by Earth System Models

... As we hypothesized, in contrast to the 36-month harvest when the majority of litter-derived SOM was found in the POM and CHAOM fractions ( Fig. 2) 23 , after 10 years most of the remaining litter-derived C and N was found in the MAOM fraction (65.8 ± 0.9 and 73.0 ± 1.0% of the remaining C and N, respectively; Fig. 2). Some litter-derived C and N persisted as POM (23.7 ± 1.1% remaining C and 23.7 ± 1.1% remaining N), and a portion was also present in the CHAOM fraction, although to a lesser degree (10.5 ± 0.9% remaining C, 7.5 ± 0.9% remaining N; Fig. 2). ...

Soil microarthropods support ecosystem productivity and soil C accrual: Evidence from a litter decomposition study in the tallgrass prairie
  • Citing Article
  • December 2015

Soil Biology and Biochemistry