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Early evolution of the venom system in lizards and snakes

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Among extant reptiles only two lineages are known to have evolved venom delivery systems, the advanced snakes and helodermatid lizards (Gila Monster and Beaded Lizard). Evolution of the venom system is thought to underlie the impressive radiation of the advanced snakes (2,500 of 3,000 snake species). In contrast, the lizard venom system is thought to be restricted to just two species and to have evolved independently from the snake venom system. Here we report the presence of venom toxins in two additional lizard lineages (Monitor Lizards and Iguania) and show that all lineages possessing toxin-secreting oral glands form a clade, demonstrating a single early origin of the venom system in lizards and snakes. Construction of gland complementary-DNA libraries and phylogenetic analysis of transcripts revealed that nine toxin types are shared between lizards and snakes. Toxinological analyses of venom components from the Lace Monitor Varanus varius showed potent effects on blood pressure and clotting ability, bioactivities associated with a rapid loss of consciousness and extensive bleeding in prey. The iguanian lizard Pogona barbata retains characteristics of the ancestral venom system, namely serial, lobular non-compound venom-secreting glands on both the upper and lower jaws, whereas the advanced snakes and anguimorph lizards (including Monitor Lizards, Gila Monster and Beaded Lizard) have more derived venom systems characterized by the loss of the mandibular (lower) or maxillary (upper) glands. Demonstration that the snakes, iguanians and anguimorphs form a single clade provides overwhelming support for a single, early origin of the venom system in lizards and snakes. These results provide new insights into the evolution of the venom system in squamate reptiles and open new avenues for biomedical research and drug design using hitherto unexplored venom proteins.
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© 2006 Nature Publishing Group
Early evolution of the venom system in lizards
and snakes
Bryan G. Fry
1,2
, Nicolas Vidal
3,4
, Janette A. Norman
2
, Freek J. Vonk
5
, Holger Scheib
6,7
, S. F. Ryan Ramjan
1
,
Sanjaya Kuruppu
8
, Kim Fung
9
, S. Blair Hedges
3
, Michael K. Richardson
5
, Wayne. C. Hodgson
8
,
Vera Ignjatovic
10,11
, Robyn Summerhayes
10,11
& Elazar Kochva
12
Among extant reptiles only two lineages are known to have
evolved venom delivery systems, the advanced snakes and helo-
dermatid lizards (Gila Monster and Beaded Lizard)
1
. Evolution of
the venom system is thought to underlie the impressive radiation
of the advanced snakes (2,500 of 3,000 snake species)
2–5
.In
contrast, the lizard venom system is thought to be restricted to
just two species and to have evolved independently from the snake
venom system
1
. Here we report the presence of venom toxins in
two additional lizard lineages (Monitor Lizards and Iguania) and
show that all lineages possessing toxin-secreting oral glands form
a clade, demonstrating a single early origin of the venom system in
lizards and snakes. Construction of gland complementary-DNA
libraries and phylogenetic analysis of transcripts revealed that
nine toxin types are shared between lizards and snakes. Toxino-
logical analyses of venom components from the Lace Monitor
Varanus varius showed potent effects on blood pressure and
clotting ability, bioactivities associated with a rapid loss of con-
sciousness and extensive bleeding in prey. The iguanian lizard
Pogona barbata retains characteristics of the ancestral venom
system, namely serial, lobular non-compound venom-secreting
glands on both the upper and lower jaws, whereas the advanced
snakes and anguimorph lizards (including Monitor Lizards, Gila
Monster and Beaded Lizard) have more derived venom systems
characterized by the loss of the mandibular (lower) or maxillary
(upper) glands. Demonstration that the snakes, iguanians and
anguimorphs form a single clade provides overwhelming support
for a single, early origin of the venom system in lizards and snakes.
These results provide new insights into the evolution of the venom
system in squamate reptiles and open new avenues for biomedical
research and drug design using hitherto unexplored venom
proteins.
In helodermatid lizards, venom is made by a gland on the lower
jaw from which ducts lead onto grooved teeth along the length of the
mandible
1
. In contrast, snake venom is produced by specialized
glands in the upper jaw
1,6–12
and is a shared derived trait of the
advanced snakes
2–5,13
. To investigate the evolution of venomous
function in squamates we first obtained sequence data from five
nuclear protein-coding genes representing major squamate lineages.
Our phylogenetic analyses show that the closest relatives of snakes are
the anguimorph (which include the venomous helodermatids) and
iguanian lizards (Fig. 1, and Supplementary Fig. 1). These results
LETTERS
Figure 1 |Relative glandular development and timing of toxin recruitment
events mapped over the squamate reptile phylogeny. Mucus-secreting
glands are coloured blue; the ancestral form of the protein-secreting gland
(serial, lobular and non-compound) red; the complex, derived form of the
upper snake-venom gland (compound, encapsulated and with a lumen)
fuchsia, and the complex, derived form of the anguimorph mandibular
venom gland (compound, encapsulated and with a lumen) orange. 3FTx,
three-finger toxins; ADAM, a disintegrin and metalloproteinase; CNP-BPP,
C-type natriuretic peptide-bradykinin-potentiating peptide; CVF, cobra
venom factor; NGF, nerve growth factor; VEGF, vascular endothelial growth
factor.
1
Australian Venom Research Unit, Level 8, School of Medicine, University of Melbourne, Parkville, Victoria 3010, Australia.
2
Population and Evolutionary Genetics Unit, Museum
Victoria, GPO Box 666E, Melbourne, Victoria 3001, Australia.
3
Department of Biology and Astrobiology Research Center, 208 Mueller Lab, Pennsylvani a State University,
University Park, Pennsylvania 16802-5301, USA.
4
UMS 602, Taxonomie et collections, Reptiles-Amphibiens, De
´partement Syste
´matique et E
´volution, Muse
´um National
d’Histoire Naturelle, 25 Rue Cuvier, Paris 75005, France.
5
Institute of Biology, Leiden University, Kaiserstraat 63, PO Box 9516, 2300 RA, Leiden, The Netherlands.
6
Department
of Structural Biology and Bioinformatics, University of Geneva and Swiss Institute of Bioinformatics, Centre Me
´dical Universitaire, 1 Rue Michel-Servet, 1211 Geneva 4,
Switzerland.
7
SBC Lab AG, Seebu¨elstrasse 26, 8185 Winkel, Switzerland.
8
Monash Venom Group, Department of Pharmacology, Monash University, Clayton, Victoria 3800,
Australia.
9
Molecular and Health Technologies, CSIRO, 343 Royal Parade, Parkville, Victoria 3010, Austra lia.
10
Department of Pathology, University of Melbourne, Parkville,
Victoria 3010, Australia.
11
Murdoch Childrens Research Institute, Royal Childrens Hospital, Flemington Road, Parkville, Victoria 3052, Austr alia.
12
Department of Zoology,
Tel Aviv University, Tel Aviv 69978, Israel.
Vol 439|2 February 2006|doi:10.1038/nature04328
584
© 2006 Nature Publishing Group
represent a major paradigm shift in the understanding of squamate
evolution. The three lineages were previously considered as part of
a large, unresolved polytomy that also included amphisbaenian,
lacertid and teiioid lizards
14,15
. We subsequently mapped the struc-
ture of protein-secreting oral glands (mandibular and maxillary)
over our revised squamate phylogeny (Fig. 1). The anguimorphs,
iguanians and snakes, which form a well-resolved clade, are shown to
be the only lineages possessing protein-secreting mandibular and/or
maxillary glands. The presence of a protein-secreting gland is
therefore a shared derived trait of this entire clade. The basal
condition of a serial, lobular and non-compound protein-secreting
gland, present in both mandibular and maxillary regions, is retained
in the iguanian lizards (Fig. 2). The restriction of protein-secreting
function to the maxillary (advanced snakes) or mandibular (angu-
imorphs) glands represents highly derived conditions. In the respect-
ive regions, the snakes (maxillary) and anguimorphs (mandibular)
have independently evolved complex, compound venom glands
with encapsulation and lumen formation for the storage of liquid
venom for ready delivery
1,16,17
. Some snakes (for example Natrix) still
express proteins in their serial, lobular, non-compound mandibular
glands, whereas the anguimorphs have lost the maxillary glands
entirely
18
.
To explain the distribution, recruitment
19
and molecular evolu-
tion
20
of venom proteins among them, representatives of the
anguimorph/iguanian/serpent clade, spanning a wide ecological
breadth, were also investigated for the secretion of toxins through
the construction of cDNA libraries. Mandibular gland cDNA
libraries were constructed for the Eastern Bearded Dragon (an
iguanian) and four varanids (anguimorphs); maxillary-gland
cDNA libraries were also constructed for the Eastern Bearded
Dragon. To provide greater coverage of venom evolution, maxillary-
gland cDNA libraries were also constructed from seven advanced
snake families. Transcripts coding for previously characterized lizard
or snake toxin types were identified in all gland cDNA libraries and
we report the presence of venom toxins in lizards (other than
Heloderma). Nine toxin types were recovered from both lizard and
snake cDNA libraries (AVIT, B-type natriuretic peptide (BNP),
CRISP, cobra venom factor, crotamine, cystatin, kallikrein, nerve
growth factor and vespryn), being secreted from mandibular and
maxillary glands. Bayesian phylogenetic analyses
13,19
of these nine
toxin types resulted in the monophyly of each venom toxin to the
Figure 2 |Transverse section of Pogona barbata (Eastern Bearded Dragon)
head to show relative arrangement of glands. Stain: Masson’s trichrome.
Original magnification £40. Abbreviations: d, duct; es, eye socket; ilg,
infralabial gland; lt, lower tooth; mn, mandible; mnivg, mandibular
incipient venom gland; mx, maxillary; mxivg, maxillary incipient venom
gland; pg, palatine gland; slg, supralabial gland; ut, upper tooth.
Figure 3 |Bioactivity of V. varius (Lace Monitor) venom. a, The effect of
different molar concentrations of purified type III PLA
2
toxin DQ139930 on
platelet aggregation. The control was saline. Grey bars, 2
m
M ADP; black
bars, 30
m
M adrenaline; white bars, 5
m
M adrenaline. b, Effect of intravenous
injection of crude venom (1 mg kg
21
) on blood pressure in the anaesthetized
rat. c,d, Effect of crude venom (200
m
gml
21
) on U46619 precontracted
endothelium-intact (c) and endothelium-denuded (d) aortic rings. n¼3;
single traces are shown.
NATURE|Vol 439|2 February 2006 LETTERS
585
© 2006 Nature Publishing Group
exclusion of related non-venom proteins. This pattern strongly
supports single early recruitment events
13
for each toxin type
before the separation of snakes, iguanians and anguimorphs (Sup-
plementary Figs 2–10). An additional toxin, type III phospho-
lipase A
2
(PLA
2
), previously characterized only from Heloderma
venoms
21
(Gila Monster and Beaded Lizard), was identified in
varanid mandibular glands.
The mapping of toxin types, revealed in this study as being secreted
in both mandibular and maxillary glands, over the revised squamate
phylogeny provides additional insights into the evolution of the
reptile venom chemical arsenal (Fig. 1). Most striking is the proposed
complexity of the venom secretions in the common ancestor of
venomous lizards and snakes with nine toxin types present. Seven of
these were previously known only from snake venoms, including one
toxin type (crotamine), sequenced from the Eastern Bearded Dragon
mandibular and maxillary glands, previously characterized only
from rattlesnake venoms. The nine shared venom toxins isolated
all possess previously well-characterized activities, including hypo-
locomotion, hypotension, hypothermia, immunomodulatory
effects, intestinal cramping, myonecrosis, paralysis of peripheral
smooth muscle unregulated activation of the complement cascade,
and hyperalgesia
19
. The type III PLA
2
toxins from Heloderma venoms
have been shown to block platelet aggregation
21
. Some of these toxins
have been shown to have potent systemic effects, such as the profound
hypotension produced by kallikrein and natriuretic toxins
19
leading
to rapid loss of consciousness, or coagulation disorders such as
prolonged bleeding as a consequence of the Heloderma type III PLA
2
toxins
21
. Some toxins exert effects that, although non-lethal, may aid
in the rapid incapacitation of prey items or potential predators, such
as the markedly increased sensitivity to pain (hyperalgesia) and
strong cramping produced by the AVIT toxins
19
.
Varanid venom was revealed by toxinological analyses to be as
complex and potent as previously analysed reptile venoms
5,22
. Liquid
chromatography/mass spectrometry
5
(LC/MS) showed the varanid
secretions to be rich in proteins with molecular masses consistent
with the following toxin types sequenced from varanid cDNA
libraries: natriuretic (2–4 kDa), type III PLA
2
(about15 kDa),
CRISP (23–25 kDa) and kallikrein (23–25 kDa) (Supplementary
Fig. 11). Haematological assays of varanid type III PLA
2
toxin
(DQ139930) purified by reverse-phase high-performance liquid
chromatography
23
showed inhibition of platelet aggregation
(Fig. 3a). Consistent with the same bioactivity as Heloderma type
III PLA
2
(ref. 21) was the preservation of cysteines and cysteine
spacing as well as the conservation of functional residues (Sup-
plementary Fig. 12A). As cDNA sequencing and LC/MS analysis
indicated a high concentration of kallikrein and BNP-type natriuretic
toxins in the varanid secretions, additional assays investigated
hypotension-inducing bioactivity. Intravenous injections of crude
Varanus varius mandibular secretion to anaesthetized rats rapidly
produced a sharp drop in blood pressure (Fig. 3b) and specific
analyses with precontracted rat aortic rings
23
demonstrated the
natriuretic peptide action of relaxation of aortic smooth muscle
(Fig. 3c, d). Consistent with the preserved bioactivity of the varanid
BNP-type natriuretic toxins, sequence analysis and molecular
modelling revealed the retention of residues necessary for natriuretic
activity
23
(Fig. 4, and Supplementary Fig. 10). The varanid forms of
the kallikrein toxins also show conservation of functional residues
and cysteine spacing (Supplementary Fig. 12B). In the CRISP toxins,
the varanid forms all have the loop I doublet (KR) that has been
proposed to be an essential part of the blockage of cyclic-nucleotide-
gated calcium channels (Supplementary Fig. 13). Most varanid
CRISP isoforms also have the loop I motif (EXXF) thought to
contribute to the inhibition of smooth muscle contraction through
the blockage of L-type Ca
2þ
channels (Supplementary Fig. 13). Other
toxin types vary to differing degrees in the relative conservation of
molecular characteristics.
The combined cDNA, LC/MS, molecular modelling and pharma-
cological results are consistent with effects reported for varanid bites,
Figure 4 |Comparative modelling of representative natriuretic peptides.
a, GNP-1 (DQ139927) from V. varius (Lace Monitor); c, TNP-c (P83230)
from Oxyuranus microlepidotus (Inland Taipan); d, DNP (P28374) from
Dendroaspis angusticeps (Eastern Green Mamba); e, Lebetin (Q7LZ09) from
Macrovipera lebetina (Elephant Snake); f, BNP from the rat (P13205) brain
and atria. Blue surface areas indicate positive charges, red areas show
negative charges. Model pairs show the sides of the protein rotated by 1808.
b, GNP in ribbon representation coloured by alignment diversity
29
.
Conserved positions are in blue, brighter colours indicate increasing degree
of variation. Functional residues
23
are CPK (Corey–Pauling–Koltun)
coloured by amino-acid type
29
. Hydrophobic residues are in grey, arginine in
blue. The conserved cysteines are shown as sticks. To minimize confusion,
all sequences are referred to by their SWISS-PROT accession numbers
(http://www.expasy.org/cgi-bin/sprot-search-ful).
LETTERS NATURE|Vol 439|2 February 2006
586
© 2006 Nature Publishing Group
which include severe pain, breathing difficulties, skeletal muscle
weakness and tachycardia
24
. One of the authors (B.G.F.) has also
acted as consultant on three varanid bites by captive bred specimens
(Varanus komodoensis (Komodo Dragon), V. scalaris (Spotted Tree
Monitor) and V. varius (Lace Monitor)), each of which resulted in
rapid swelling (noticeable within minutes), dizziness, localized dis-
ruption of blood clotting and shooting pain extending from the
affected digit up to the elbow, with some symptoms lasting for several
hours. The rapidity and pathology are consistent with bioactive
secretions rather than bacterial infection. In addition, varanid
venom also has been shown to have the ability to rapidly paralyse
small animals such as birds
25
.
As well as providing evidence about the role of bioactive secretions
in the effects produced by varanid bites, the complex and bioactive
secretions present in ‘non-venomous’ lizards forces a fundamental
rethinking of the very concept of ‘non-venomous’ reptile. The
evolution of venomous function is considered to be a key innovation
driving ecological diversification in advanced snakes
2–5
. Our results
indicate that the single origin of venom in squamate reptiles might
also have been a key factor in the adaptive radiation and subsequent
ecological success of lizard lineages such as anguimorphs and
iguanians; the well-supported anguimorph/iguanian/serpent clade
represents about 4,600 out of about 7,900 extant squamate species, or
58% of the total squamate species diversity. There is also palaeonto-
logical evidence for the presence of venom delivery systems in some
Upper Cretaceous anguimorphs and snakes
8,26,27
. Because fossil data
indicate that the clade containing anguimorphs, iguanians and
snakes dates from Late Triassic/Early Jurassic
28
, we infer that the
venomous function arose once in squamate evolution, at about
200 Myr ago. This considerably revises previous estimates of about
100 Myr ago based on the assumed independent origin of venomous
function in snakes and lizards.
Additional work aimed to investigate this special area of reptile
evolution would include investigating the mandibular or maxillary
secretions of all main lineages belonging to the toxin-secreting clade.
Studies of additional transcriptomes may reveal earlier recruitment
of a particular toxin type, such as those currently sequenced only
from snake venoms for example, or may discover previously
unrecognized toxin types. Further pharmacological investigations
may shed more light upon the bioactivities and the relative use in
defence, in prey capture or in predigestion. Because increased
complexity of the venom gland was shown in this study to be linked
to additional toxin recruitment events (Fig. 1), future work should
include an exploration of the relationship between glandular com-
plexity and the relative toxicity of the venom. The new lizard venom
toxins exhibit considerable sequence diversity consistent with the
birth-and-death mode of protein evolution that has given rise to a
wide diversity of bioactivities in snake venoms
20
. These molecules
represent a tremendous hitherto unexplored resource not only for
understanding reptile evolution but also for use in drug design and
development.
METHODS
Toxin molecular evolution. Specimen collection localities: Azemiops feae
(Fea’s Viper), Guizhou, China; Enhydris polylepis (Macleay’s Water Snake),
Darwin, Northern Territory, Australia; Dispholidus typus (Boomslang), Uganda;
Oxyuranus microlepidotus (Inland Taipan), progeny of captive specimens from
Goydnor’s Lagoon, South Australia; Pogona barbata (Eastern Bearded Dragon),
progeny of Brisbane, Queensland, Australia locality captive specimens;
Telescopus dhara (Egyptian Catsnake), Egypt; Trimorphodon biscutatus (Lyre
Snake), Arizona, USA; Liophis poecilogyrus (Gold-bellied Snake), Paraguay;
Leioheterodon madagascariensis (Madagascar Giant Hognosed Snake), Mada-
gascar; Philodryas olfersii (Argentine Racer), Argentina; Rhabdophis tigrinus
(Tiger Keelback), Hunan, China; Varanus acanthurus (Spiny-tailed Monitor),
progeny of captive specimens collected from Newman, Western Australia;
Varanus mitchelli (Mitchell’s Water Monitor), Kununurra, Western Australia;
Varanus panoptes rubidus (Desert Spotted Goanna), Sandstone, Western Aus-
tralia; Varanus varius (Lace Monitor), Mallacoota, Victoria, Australia.
RNA extraction and construction of cDNA library: these steps were under-
taken with the Qiagen RNeasy and Oligotex messenger RNA kits and the Creator
SMART cDNA Library Construction Kit from BD Biosciences. Full details are
available in Supplementary Information.
Histology. Tissue was dissected from animals after killing, then fixed in Bouin’s
fluid and decalcified overnight in acid alcohol (5% HCl in 70% ethanol). The
tissues were dehydrated in graded ethanols, cleared in Histoclear and embedded
in paraffin. Sections were cut to 10
m
m thickness and stained with Masson’s
trichrome (Goldner’s modification), Alcian blue at pH 1.0 and 2.4 alone or
counterstained with haematoxylin–eosin or periodic acid Schiff in accordance
with standard techniques.
Molecular modelling. Three-dimensional models were generated by aligning
target sequences to the 1Q01 template with SPDBV
29
. Sequence-to-structure
alignments were sent to the Swiss-Model server. For the resulting models a van
der Waals surface was calculated in MolMol
30
. Surfaces were coloured by a
‘simplecharge’ potential as calculated in MolMol.
Pharmacology. Male rats were anaesthetized with sodium pentobarbitone (60–
100 mg kg
21
, intraperitoneally). Venom or vehicle (namely 0.1% BSA) was
administered through the jugular-vein cannula. Blood pressure was measured
with a Gould (P23) pressure transducer attached to a carotid artery cannula, and
recorded on a MacLab system.
Platelet aggregometry. Blood samples were collected from normal, healthy adult
volunteers (n¼2) who had not taken any medication during the week before
collection. Whole-blood samples were mixed 9:1 with 0.106 M sodium citrate.
Citrated blood samples were centrifuged for 10min at 100 gat 20 8C. The
supernatant platelet-rich plasma (PRP) was removed and rested at room
temperature for 30 min before assay. Platelet-poor plasma (PPP) for each
volunteer was also prepared (by centrifugation for 20 min at 3,500 g) for platelet
aggregometry. Platelet aggregation was measured with the Aggram platelet
aggregometer and Hemoram software (Helena Laboratories). PRP aliquots
(225
m
l) were incubated in glass cuvettes for 2 min at 378C. Purified Varanus
varius PLA
2
toxin DQ139930 (60, 6 and 0.6
m
M) was added to the PRP and
incubated at 37 8C for 3 min before the addition of agonist (2
m
M ADP, or 5 or
30
m
M adrenaline), to induce platelet aggregation, or sterile saline as a control.
Platelet aggregation was monitored for 10 min. The degree of maximum platelet
aggregation was assessed by measuring the optical transmission of light, zeroed
with the appropriate PPP for each patient sample, through the PRP samples and
compared with the controls (PRP samples assayed without the addition of
toxin).
Squamate reptile phylogeny. Recent studies
14,15
included representatives of all
major squamate lineages and identified a clade comprising the following five
lineages: first, Scincoidea (Scincidae, Xantusiidae and Cordylidae); second,
Teiioidea (Teiidae and Gymnophthalmidae), Lacertidae and Amphisbaenia
(Rhineuridae, Bipedidae, Trogonophidae and Amphisbaenidae); third, Iguania
(Iguanidae, Agamidae and Chamaeleontidae); fourth, Anguimorpha (Varanidae,
Helodermatidae, Anguidae, Shinisaurus and Xenosaurus); and fifth, Serpentes. The
venomous squamates (advanced snakes and helodermatid lizards) are included
in this large clade, whereas two other families of squamates (Gekkonidae and
Dibamidae) are excluded
14,15
. We focused on this clade and sampled five nuclear
protein-coding genes, including two genes (C-mos and RAG1) used in other
studies and three genes (RAG2,R35 and HOXA13) not used previously to clarify
squamate phylogeny. Phylogenies were built with probabilistic approaches
(maximum-likelihood (ML) and bayesian methods of inference). Because
separate analyses showed no significant topological incongruence, we performed
combined analyses, which are considered to be our best estimates of phylogeny.
Scincoidea was used as the outgroup because it was shown to be the most basal
lineage of the clade
14,15
. The bayesian and ML trees obtained were identical and
showed significant support for most nodes (see Supplementary Information). In
particular, a clade that includes Serpentes, Iguania and Anguimorpha was
resolved (bayesian posterior probability 100%; ML bootstrap value 99%). In
turn, we found that the closest relative of this clade is one comprising Teiioidea,
Lacertidae and Amphisbaenia. Full details are available in Supplementary
Information.
Received 13 July; accepted 17 October 2005.
Published online 16 November 2005.
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Supplementary Information is linked to the online version of the paper at
www.nature.com/nature.
Acknowledgements We thank the following persons and institutions who
helped us or contributed tissue samples used in this study: A. Fry, Alice Springs
Reptile Centre, Australian Reptile Park, M. A. G. de Bakker, R. L. Bezy, B. Branch,
J. Campbell, N. Clemann, C. Clemente, C. Cicero, K. Daoues, A. S. Delmas,
B. Demeter, J. Haberfield, A. Hassanin, Healesville Sanctuary, M. Hird, Louisiana
State University Museum of Zoology, P. Moler, T. Moncuit, P. Moret, National
Museum of Natural History Naturalis Leiden (J. W. Arntzen), T. Pappenfus,
J.-C. Rage, C. Skliris, J. Smith, S. Sweet, Ultimate Reptiles (South Australia),
University of California Museum of Vertebrate Zoology (Berkeley), J. Walker,
R. Waters, J. Weigel and B. Wilson. We also thank A. Webb and T. Purcell for
providing HPLC access; N. Williamson for help with preliminary mass
spectrometry characterization; E. V. Grishin for help in obtaining the references
in Russian; S. Edwards for comments; and T. van Wagner and V. Wexler for
artwork. This work was funded by the Service de Syste
´matique mole
´culaire of
the Muse
´um National d’Histoire Naturelle, Institut de Syste
´matique (N.V.) and
by grants from the Australian Academy of Science (B.G.F.), Australian
Geographic Society (B.G.F.), Australia & Pacific Science Foundation (B.G.F.),
Australian Research Council (B.G.F.), CASS Foundation (B.G.F.), Commonwealth
of Australia Department of Health and Aging (B.G.F.), Ian Potter Foundation
(B.G.F.), International Human Frontiers Science Program Organisation (B.G.F.),
Leiden University (F.J.V., M.K.R.), NASA Astrobiology Institute (S.B.H.), National
Science Foundation (S.B.H.) and University of Melbourne (B.G.F.). We thank the
relevant wildlife departments for granting the scientific permits for field
collection of required specimens.
Author Information The sequences of the cDNA clones have been deposited in
GenBank (accession numbers DQ139877–DQ139931 and DQ184481), as have
the nuclear gene sequences (DQ119594–DQ119641). Reprints and permissions
information is available at npg.nature.com/reprintsandpermissions. The authors
declare no competing financial interests. Correspondence and requests for
materials should be addressed to B.G.F. (bgf@unimelb.edu.au).
LETTERS NATURE|Vol 439|2 February 2006
588

Supplementary resources (100)

... It attacks when the victim approaches a distance of about one meter [10]. The Komodo dragon's teeth damage the integument of the victim's body, which not only causes damage in the form of damage to the skin, hypodermis, muscles, blood vessels and nerves, but also penetrates tissues with the venom produced by the venom glands located near the mandible [11]. The bite force is an important value for a predator, but the Komodo dragon's bite force is relatively low, and while feeding, it avoids the contact of the teeth with the skeletal elements. ...
... It seems that the main role in killing the Komodo dragon's prey is played by venom. The composition of venom can act the same as, for example, in Varanus varius [11]. The previous theory about the leading role of bacteria inhabiting the Komodo dragon's mouth and contributing to the death of the victim seems to be out of date [10,13,14]. ...
... Unlike other reptiles with venom glands, lizard teeth do not have structures that facilitate venom drainage, such as those of helodermatid lizards [11]. It should be noted, however, that each tooth of the lizard mandible is subordinated to the mouth of the duct ...
Article
Full-text available
The present study aimed to characterize the macrostructure and microstructure of the mandibular teeth of the Komodo dragon (Varanus komodoensis) and the methods it uses to obtain food. Examinations were performed using a stereoscopic microscope, autofluorescence method, histological method and computed microtomography. A detailed macro- and micro-structural description of V. komodoensis mandibular teeth were made. The mandibular teeth are laterally flattened along their entire length and the dental crown is hooked caudally. The part of the nasal margin of the tooth crown is irregular, while the caudal margin of the tooth is characteristically serrated, except for the tooth base area. There are longitudinal grooves on the lingual and vestibular surfaces up to the lower third of the tooth height. The mandibular tooth is surrounded by a cuff made of the oral mucosa, containing the opening of the venom gland. In the histological structure of the tooth, the enamel covering the tooth crown and the dentin under the enamel are distinguished. The inside of the tooth, except its basal part, is filled with the tooth chamber, while the inside of the lower part of the tooth is filled with plicidentine, which corresponds to external furrows on the enamel. The plicidentine arrangement resembles a honeycomb. A small amount of dentine folds reach up to the tooth apex. Characteristic features of the structure of the mandibular teeth in V. komodoensis may indicate their significant role, in addition to the venom glands, in obtaining food in the natural environment of this species.
... Animal venoms evolved in a wide phylogenetic range of organisms for predatory and defensive purposes (Fry et al., 2009a;Calvete 2017;Schendel et al., 2019;Zancolli and Casewell, 2020). In reptiles, venom has been hypothesized to originated just once, approximately in the mid-Jurassic (170 mya), in a monophyletic clade coined Toxicofera that combines the suborders Serpentes, Anguimorpha, and Iguania of scaled reptiles (Vidal and Hedges, 2009;Fry et al., 2006Fry et al., , 2012Douglas et al., 2010;Koludarov et al., 2017). ...
... This also applies to the earless monitor lizard Lanthanotus borneensis (Mebs et al., 2021), a close relative of the Varanidae family (Ast 2001;Douglas et al., 2010;Wiens et al., 2012;Pyron et al., 2013). Proteomic analysis confirmed the presence of kallikrein as the major biologically active component of the monitor lizard's submandibular gland extract (Mebs et al., 2021), as shown also in previous studies (Koludarov et al., 2017;Fry et al., 2006Fry et al., , 2009bFry et al., , 2010aFry et al., , 2010b. However, in view of the L. borneensis ′ s biology, this enzyme, which has been considered to be an important constituent of anguimorphan "venoms", does not appear to play an active part in prey acquisition or defence (Mebs et al., 2021). ...
... 621 and 539 hits were identified, respectively, in the shotgun analysis of Shinisaurius and Corucia gland extracts, and 59 entries were assigned through bottom-up LC-MS/MS in each gland extract. None of these hits corresponded to any reported putative anguimorphan toxin gathered from i) proteomic analysis of Lanthanotus borneensis (Mebs et al., 2021); ii) transcriptomic analysis of the mandibular gland of Heloderma horridum (beaded lizard) (Lino-López et al., 2020) and protein sequencing of its protein secretion (Nikai et al., 1988;Utaisincharoen et al., 1993); iii) transcriptomic analysis of the mandibular gland of a number of helodermatid and varanid taxa (Fry et al., 2006(Fry et al., , 2009bKoludarov et al., 2014Koludarov et al., , 2017; and iv) the genome sequence of Varanus komodoensis (Lind et al., 2019). Furthermore, no single toxin-derived peptide homologous to those representing biosynthetic products of snake venom glands (Zancolli and Casewell, 2020) were recovered in the proteomic datasets of S. crocodilurus and C. zebrata mandibular gland extracts displayed in Tables S1-S3. ...
Article
Based on its phylogenetic relationship to monitor lizards (Varanidae), Gila monsters (Heloderma spp.), and the earless monitor Lanthanotus borneesis, the Chinese crocodile lizard, Shinisaurus crocodilurus, has been assigned to the Toxicofera clade, which comprises venomous reptiles. However, no data about composition and biological activities of its oral secretion have been reported. In the present study, a proteomic analysis of the mandibular gland of S. crocodilurus and, for comparison, of the herbivorous Solomon Island skink Corucia zebrata, was performed. Scanning electron microscopy (SEM) of the teeth from S. crocodilurus revealed a sharp ridge on the anterior surface, but no grooves, whereas those of C. zebrata possess a flattened crown with a pointed cusp. Proteomic analysis of their gland extracts provided no evidence of venom-derived peptides or proteins, strongly supporting the non-venomous character of these lizards. Data are available via ProteomeXchange with identifier PXD039424.
... It attacks when the victim approaches a distance of about one meter [10]. The Komodo dragon's teeth damage the integument of the victim's body, which not only causes damage in the form of damage to the skin, hypodermis, muscles, blood vessels and nerves, but also penetrates tissues with the venom produced by the venom glands located near the mandible [11]. The bite force is an important value for a predator, but the Komodo dragon's bite force is relatively low, and while feeding, it avoids the contact of the teeth with the skeletal elements. ...
... It seems that the main role in killing the Komodo dragon's prey is played by venom. The composition of venom can act the same as, for example, in Varanus varius [11]. The previous theory about the leading role of bacteria inhabiting the Komodo dragon's mouth and contributing to the death of the victim seems to be out of date [10,13,14]. ...
... Unlike other reptiles with venom glands, lizard teeth do not have structures that facilitate venom drainage, such as those of helodermatid lizards [11]. It should be noted, however, that each tooth of the lizard mandible is subordinated to the mouth of the duct ...
... 36 The histochemical section in sagittal orientation reveals the closely associated adductor externus superficialis (AES), dorsally and caudally attached to elapid venom glands, and responsible for venom release after compression ( Figure 1G). 34,36,38 Furthermore, this compressor muscle is attached to a thick connective tissue capsule (capsula fibrosa) that encloses the venom gland and clearly delimits it from the AES ( Figure 1H). 34,39 The roughly centered venom duct, which is directly associated to a narrow lumen above, runs in a posteroanterior direction and divides the inner gland structure in an anterior venom gland (AVG) and a posterior venom gland (PVG) regime ( Figure 1G). ...
... The outer surface of the STs is formed by a single layer of epithelium with secretory cells, which enclose the colloid-like lumen and shapes the venom gland fine structure analogous to other oral secretory systems, also known for secretion and long-term storage ( Figure 1H). 38,40 This underlying morphological data of longitudinal venom gland sections can help put the localization and visualization of numerous venom peptides into a morphological context. ...
Article
Among venomous animals, toxic secretions have evolved as biochemical weapons associated with various highly specialized delivery systems on many occasions. Despite extensive research, there is still limited knowledge of the functional biology of most animal toxins, including their venom production and storage, as well as the morphological structures within sophisticated venom producing tissues that might underpin venom modulation. Here, we report on the spatial exploration of a snake venom gland system by matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI), in combination with standard proteotranscriptomic approaches, to enable in situ toxin mapping in spatial intensity maps across a venom gland sourced from the Egyptian cobra (Naja haje). MALDI-MSI toxin visualization on the elapid venom gland reveals a high spatial heterogeneity of different toxin classes at the proteoform level, which may be the result of physiological constraints on venom production and/or storage that reflects the potential for venom modulation under diverse stimuli.
... Mostly, Snake bite and death cases are associated with agricultural work, especially in South Southeast Asia, sub-Saharan Africa and central and South America [6,7]. However, the snake venoms had been in particular originated with inside the Cenozoic Era [8,9] and they are amongst the very much described of creature toxins, which consist of more than 20 different complex compounds, pharmacologically potent proteins and peptides [10,11]. The complicated combination of proteins, enzyme and various other components has toxic and lethal properties [3]. ...
Article
Full-text available
The present study examines the biogenic preparation of gold nanoparticles using jellyfish Acromitus flagellatus (A. flagellatus) nematocyst venom and their anti-proliferative studies in HEK-293 (normal) and MCF-7 (cancer) cell lines. The nematocyst venom-mediated biogenic prepared gold nanoparticles were characterized using UV–Vis spectroscopy, X-ray diffraction (XRD) and transmission electron microscopy (TEM). TEM micrographs showed that biosynthesized gold nanoparticles possess spherical and triangle morphology with size ranges of about 12–53 and 173–217 nm, respectively. Furthermore, the MTT assay was performed to investigate the anti-proliferative effect of nematocyst venom and nematocyst venom-mediated biogenic gold nanoparticles. The results reported that the nematocyst venom-mediated biogenic gold nanoparticles reduced the cell proliferation in cancer cells MCF-7 with an IC50 of 45.65 μg mL−1 and 18.24 μg mL−1 compared to normal cells (HEK-293) at 48 h. These findings indicated that gold nanoparticles with venom residue exert their anti-proliferative action on the MCF-7 cell line.
Article
The many-banded krait, Bungarus multicinctus, has been recorded as the animal resource of JinQianBaiHuaShe in the Chinese Pharmacopoeia. Characterization of its venoms classified chief phyla of modern animal neurotoxins. However, the evolutionary origin and diversification of its neurotoxins as well as biosynthesis of its active compounds remain largely unknown due to the lack of its high-quality genome. Here, we present the 1.58 Gbp genome of B. multicinctus assembled into 18 chromosomes with contig/scaffold N50 of 7.53 Mbp/149.8 Mbp. Major bungarotoxin-coding genes were clustered within genome by family and found to be associated with ancient local duplications. The truncation of glycosylphosphatidylinositol anchor in the 3ʹ-terminal of a LY6E paralog released modern three-finger toxins (3FTxs) from membrane tethering before the Colubroidea divergence. Subsequent expansion and mutations diversified and recruited these 3FTxs. After the cobra/krait divergence, the modern unit-B of β-bungarotoxin emerged with an extra cysteine residue. A subsequent point substitution in unit-A enabled the β-bungarotoxin covalent linkage. The B. multicinctus gene expression, chromatin topological organization, and histone modification characteristics were featured by transcriptome, proteome, chromatin conformation capture sequencing, and ChIP-seq. The results highlighted that venom production was under a sophisticated regulation. Our findings provide new insights into snake neurotoxin research, meanwhilewill facilitate antivenom development, toxin-driven drug discovery and the quality control of JinQianBaiHuaShe.
Article
Snakes comprise nearly 4,000 extant species found on all major continents except Antarctica. Morphologically and ecologically diverse, they include burrowing, arboreal, and marine forms, feeding on prey ranging from insects to large mammals. Snakes are strikingly different from their closest lizard relatives, and their origins and early diversification have long challenged and enthused evolutionary biologists. The origin and early evolution of snakes is a broad, interdisciplinary topic for which experts in palaeontology, ecology, physiology, embryology, phylogenetics, and molecular biology have made important contributions. The last 25 years has seen a surge of interest, resulting partly from new fossil material, but also from new techniques in molecular and systematic biology. This volume summarises and discusses the state of our knowledge, approaches, data, and ongoing debates. It provides reviews, syntheses, new data and perspectives on a wide range of topics relevant to students and researchers in evolutionary biology, neontology, and palaeontology.
Article
Snakes comprise nearly 4,000 extant species found on all major continents except Antarctica. Morphologically and ecologically diverse, they include burrowing, arboreal, and marine forms, feeding on prey ranging from insects to large mammals. Snakes are strikingly different from their closest lizard relatives, and their origins and early diversification have long challenged and enthused evolutionary biologists. The origin and early evolution of snakes is a broad, interdisciplinary topic for which experts in palaeontology, ecology, physiology, embryology, phylogenetics, and molecular biology have made important contributions. The last 25 years has seen a surge of interest, resulting partly from new fossil material, but also from new techniques in molecular and systematic biology. This volume summarises and discusses the state of our knowledge, approaches, data, and ongoing debates. It provides reviews, syntheses, new data and perspectives on a wide range of topics relevant to students and researchers in evolutionary biology, neontology, and palaeontology.
Article
Venoms are evolutionary novelties that have real-world implications due to their impact upon human health. However, relative to the abundant studies of elapid and viperid snake venoms, fewer investigations have been undertaken on those of rear-fanged snakes as they are more problematic for obtaining venom. While most rear-fanged venomous snakes are not considered to be of great medical importance, several species are capable of producing fatalities. Most notable among these are snakes from the genus Rhabdophis, the Asian “keelback” snakes. Prior work have described potent procoagulant toxicity suggesting Factor X and prothrombin activation, but did not investigate the ability to activate other clotting factors. Here we show that in addition to activating both Factor X and prothrombin (with prothrombin twice that of FX), the venom of Rhabdophis subminiatus is able to more potently activate Factor VII (ten times that of prothrombin), while also activating FXII and FIX equipotently to prothrombin, and with FXI also activated but at a much lower level. The ability to activate FVII represents a third convergent evolution of this trait. The Australian elapid clade of [Oxyuranus (taipans) + Pseudonaja (brown snakes)] was the first identified to have evolved this trait. and only recently was it shown to be independently present in another lineage (the Central American viperid species Porthidium volcanicum). In addition, the abilities to activate FXI and FXII are also convergent between R. subminiatus and P. volcanicum, but with R. subminiatus being much more potent. By testing across amphibian, avian, and mammalian plasmas we demonstrate that the venom is potently procoagulant across diverse plasma types. However, consistent with dietary preference, R. subminiatus venom was most potent upon amphibian plasma. While a Rhabdophis antivenom is produced in Japan to treat R. tigrinus envenomings, it is scarce even within Japan and is not exported. As this genus is very wide-ranging in Asia, alternate treatment options are in need of development. Hence we tested the ability of candidate, broad-spectrum enzyme inhibitors to neutralize R. subminiatus venom: marimastat was more effective than prinomastat but both marimastat and prinomastat were significantly more effective than DMPS (2,3-Dimercapto-1-propanesulfonic acid). The findings of this study shed light on the evolution of these fascinating rear-fanged snakes as well as explored their systemic effects upon blood coagulation and point to potential treatment options for the rare, but potentially lethal encounters.
Article
Full-text available
Colubroids or advanced snakes form a monophyletic group comprising four families: Atractaspididae (11 genera, 70 species), “Colubridae” (300 genera, 1850 species), Elapidae (65 genera, 270 species) and Viperidae (33 genera, 240 species). A preliminary classification of colubroids based both on morphological and molecular data is presented and all extant genera of “Colubridae” are listed accordingly. The front-fanged venom system (displayed by some Atractaspididae, all Elapidae and all Viperidae) evolved several times independently and appeared early within colubroids. The rear-fanged venom system (displayed by some Atractaspididae and many “Colubridae”) has been studied less than the front-fanged system, although it is clear that opisthoglyph “Colubridae” constitute a polyphyletic group. The other components of the venom apparatus, the glands and the secretions, also show great variability, rendering the reconstruction of the evolutionary history of the venom apparatus difficult. Nevertheless, the presence of serous secretory cells in the supralabial region and of a differentiated maxillary dentition within the most basal extant lineages of advanced snakes strongly suggest that the venom apparatus is a synapomorphy of the Colubroidea and that its absence in a few “Colubridae” results from secondary losses.
Article
MOLMOL is a molecular graphics program for display, analysis, and manipulation of three-dimensional structures of biological macromolecules, with special emphasis on nuclear magnetic resonance (NMR) solution structures of proteins and nucleic acids. MOLMOL has a graphical user interface with menus, dialog boxes, and on-line help. The display possibilities include conventional presentation, as well as novel schematic drawings, with the option of combining different presentations in one view of a molecule. Covalent molecular structures can be modified by addition or removal of individual atoms and bonds, and three-dimensional structures can be manipulated by interactive rotation about individual bonds. Special efforts were made to allow for appropriate display and analysis of the sets of typically 20-40 conformers that are conventionally used to represent the result of an NMR structure determination, using functions for superimposing sets of conformers, calculation of root mean square distance (RMSD) values, identification of hydrogen bonds, checking and displaying violations of NMR constraints, and identification and listing of short distances between pairs of hydrogen atoms.
Article
An analysis is presented of a sample of Atractaspididae (sensu McDowell) plus Macrelaps, Aparallactus, Apostolepis, Elapomorphus, Homoroselaps and six genera of African elapids in respect of squamation, reproductive organs, skull, head muscles and vertebrae. Homoroselaps is linked with the African Elapidae and is returned to that family. Scattered special resemblances to atractaspids are interpreted as homoplasies. Some interrelationships of the African elapids are suggested. The South American Apostolepis and Elapomorphus represent a separate, possibly related, lineage at the same grade level as the African Atractaspididae. Macrelaps and Aparallactus are transferred to the Atractaspididae. Atractaspis emerges as a low grade but highly divergent member of the family. Macrelaps is the most primitive. The other taxonomic units are completely resolved with, however, the anomaly of reversal to the seemingly primitive states of six characters in four lineages (six genera). The Atractaspididae, Apostolepis and Elapomorphus are regarded as low grade members of the Caenophidia. It is suggested that early in the history of the caenophidian lineage a venom apparatus was acquired, prior to the major radiation of the group. Many descendent lineages show regression of the venom apparatus.
Article
New fossils of helodermatid squamates from the early Miocene of Nebraska prompted us to examine all known material actually or potentially referrable to Helodermatidae. Although represented today only by two species ranging from southwestern US south to Guatemala, the fossil record of Helodermatidae encompasses the Late Eocene of France, and the latest Paleocene to Recent of North America. If Paraderma bogerti Estes is a helodermatid, as we contend, Helodermatidae extends to the late Cretaceous in North America. Extinct lanthanotines and varanines from the late Cretaceous of Mongolia, together forming the sister taxon (Varanidae) of Helodermatidae, confirm the antiquity of these groups. This evaluation of helodermatid phylogeny requires a review of character states found in their sister taxon. Varanidae (Lanthanotinae + Varaninae). We clarify a number of morphological features such as the structure of the intramandibular joint and retraction of the bony nares. Monophyly of the group Helodermatidae + Varanidae is easily documented, and we restrict the name Varanoidea to that taxon. The phylogeny of a more encompassing taxon, Platynota, is ambiguous and we recommend that designation only as a term of convenience, to include varanoids and those other taxa with which they have been traditionally associated ('Necrosauridae', Mosasauridae, Aigialosauridae, and Dolichosauridae). Our interpretations of helodermatid phylogeny are consistent with morphological evidence, and with behavioural and ecological aspects of their feeding biology.-from Authors
Article
The fangs and venom glands develop from a common primordium in the opisthoglyph Telescopus fallax and in the aglyph Thamnophis sirtalis. These glands arise at the posterior end of the maxillary dental lamina, separately from other supralabial glands. The early development of the venom apparatus of Telescopus and Thamnophis is similar to that of Vipera palaestinae.