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Intergroup-statement: statement of the german ovarian cancer commission, the North-Eastern German Society of gynecological Oncology (NOGGO), AGO Austria and AGO Swiss regarding the use of homologous repair deficiency (HRD) assays in advanced ovarian cancer

Authors:

Abstract

Introduction Homologous recombination deficiency (HRD) is a key biomarker in the management of high-grade serous ovarian cancer (HGSOC), guiding treatment decisions, particularly regarding the use of poly(ADP-ribose) polymerase inhibitors (PARPi). As multiple HRD assays are available, each with distinct methodologies and cutoff values, the interpretation and clinical application of HRD testing remain complex. This intergroup statement, endorsed by the German Ovarian Cancer Commission, NOGGO, AGO Austria, and AGO Swiss, aims to provide guidance on the indications, appropriate use, and limitations of HRD testing in ovarian cancer. Materials and methods The statement is based on an interdisciplinary review of available literature, clinical trial data, and expert consensus. The recommendations focus on the current landscape of HRD assays, their clinical applicability, and practical considerations regarding the optimal timing and indications for testing. Results and discussion Various HRD assays, including established commercial tests and emerging academic-clinical approaches, are reviewed in this statement. The document outlines key eligibility criteria for HRD testing in ovarian cancer, emphasizing its relevance in specific histological subtypes and clinical scenarios. Additionally, exclusion criteria are defined, highlighting cases where HRD testing may not be appropriate due to insufficient clinical validation or lack of therapeutic implications. Finally, the statement discusses the pathological minimum requirements for tissue samples used in HRD testing, ensuring adequate sample quality and tumor content for reliable results. Conclusion HRD testing is a valuable tool for personalizing ovarian cancer treatment, particularly in identifying patients who may benefit from PARPi therapy. However, assay selection, timing, and result interpretation require careful consideration. This statement provides a structured approach to optimize HRD testing, aiming to improve clinical decision-making and patient outcomes.
Vol.:(0123456789)
Archives of Gynecology and Obstetrics (2025) 311:1445–1450
https://doi.org/10.1007/s00404-025-07991-y
POSITION STATEMENT
Intergroup‑statement: statement ofthegerman ovarian cancer
commission, theNorth‑Eastern German Society ofgynecological
Oncology (NOGGO), AGO Austria andAGO Swiss regardingtheuse
ofhomologous repair deficiency (HRD) assays inadvanced ovarian
cancer
LukasChinczewski1 · PhilippHarter2· LukasHeukamp3· DorisMayr4· ChristophGrimm5·
ViolaHeinzelmann‑Schwarz6· PaulineWimberger7· SvenMahner8· IoanaElenaBraicu1· WolfgangSchmitt9·
CarstenDenkert10· JalidSehouli1
Received: 30 January 2025 / Accepted: 21 February 2025 / Published online: 12 March 2025
© The Author(s) 2025
Abstract
Introduction Homologous recombination deficiency (HRD) is a key biomarker in the management of high-grade serous ovar-
ian cancer (HGSOC), guiding treatment decisions, particularly regarding the use of poly(ADP-ribose) polymerase inhibitors
(PARPi). As multiple HRD assays are available, each with distinct methodologies and cutoff values, the interpretation and
clinical application of HRD testing remain complex. This intergroup statement, endorsed by the German Ovarian Cancer
Commission, NOGGO, AGO Austria, and AGO Swiss, aims to provide guidance on the indications, appropriate use, and
limitations of HRD testing in ovarian cancer.
Materials and methods The statement is based on an interdisciplinary review of available literature, clinical trial data, and
expert consensus. The recommendations focus on the current landscape of HRD assays, their clinical applicability, and
practical considerations regarding the optimal timing and indications for testing.
Results and discussion Various HRD assays, including established commercial tests and emerging academic-clinical
approaches, are reviewed in this statement. The document outlines key eligibility criteria for HRD testing in ovarian cancer,
emphasizing its relevance in specific histological subtypes and clinical scenarios. Additionally, exclusion criteria are defined,
highlighting cases where HRD testing may not be appropriate due to insufficient clinical validation or lack of therapeutic
implications. Finally, the statement discusses the pathological minimum requirements for tissue samples used in HRD test-
ing, ensuring adequate sample quality and tumor content for reliable results.
Conclusion HRD testing is a valuable tool for personalizing ovarian cancer treatment, particularly in identifying patients
who may benefit from PARPi therapy. However, assay selection, timing, and result interpretation require careful considera-
tion. This statement provides a structured approach to optimize HRD testing, aiming to improve clinical decision-making
and patient outcomes.
Keywords Gynecological oncology· Ovarian cancer· Homologous recombination deficiency testing· Maintenance
therapy· Intergroup statement
Denition ofHRD andHRD testing
Genomic instability (GIS) is one of the most common causes
of tumorigenesis [1]. There are several DNA repair systems
that play a significant role in maintaining genomic stability.
If there is an imbalance or malfunction in these systems,
often due to mutations, the genome exhibits instability. One
of these DNA repair systems is the homologous recombina-
tion repair (HRR) system. When double strand breaks and
interstrand cross-links (ICL) occur during genomic replica-
tion, the HRR system respond to these mutations with its
proteins for repair.
Extended author information available on the last page of the article
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1446 Archives of Gynecology and Obstetrics (2025) 311:1445–1450
Defects in HRR pathway due to (epi-) genetic events
may result in the phenotype of homologous repair defi-
ciency (HRD), indicating the inability to repair DNA
double-strand breaks. If HRD occurs, GIS can be pro-
moted. GIS may manifest as genomic loss of heterozygo-
sity (gLOH), telomeric imbalance (TAI) and large-scale
transitions (LST).
Especially in the tumorigenesis of high-grade serous
ovarian cancer (HGSOC), the HRR system plays a sig-
nificant role. Germline and somatic mutations within
the breast-cancer gene (BRCA) 1 and BRCA 2 are mainly
responsible for HRR pathway defects. Approximately 13
to 15% of patients with HGSOC show a germline mutation
in BRCA1/2, and up to 3–7% show somatic mutations [2,
3]. However, besides BRCA1 and 2, there are other genes
involved that may lead to HRD, such as BRCA1-associated
RING domain 1 (BARD1), BRCA-interacting protein 1
(BRIP1), checkpoint kinase 1 (CHEK1), checkpoint kinase
2 (CHEK2), family with sequence similarity 175, mem-
ber A (FAM175A), nibrin (NBN), partner and localizer of
BRCA2 (PALB2), RAD51 paralog C (RAD51C), RAD51
paralog D (RAD51D), and many more.
The clinical impact of these malfunctions in the
HRR pathway was demonstrated by the introduction of
poly(adenosine diphosphate [ADP]–ribose) polymerase
(PARP) inhibitors (PARPi). The PARPi block base exci-
sion repair, which leads to the accumulation of single-
strand breaks during DNA replication. This ultimately
results in a collapse of the repair system and the formation
of double-strand breaks. In cells with HRD, these breaks
cannot be adequately repaired, leading to synthetic letality
in the presence of PARPi.
The efficacy of PARPi in maintenance therapy for
HGSOC has been demonstrated in several studies, includ-
ing those utilizing different drugs such as Olaparib mono-
therapy in the SOLO1 study, the combination of Olaparib
and bevacizumab in the PAOLA1 study, and Niraparib
monotherapy in the PRIMA trial, which led to EMA and
FDA approval [47].
The BRCA germline mutations were the first to be
understood as an indicator for the effective use of PARPi.
The PAOLA1 trial showed that not only patients with path-
ogenic BRCA1/2 mutations but also those with genomic
instability measured by the Myriad MyChoice assay ben-
efited from maintenance therapy with Olaparib. Therefore,
the importance of other HRD-related genes is emphasized,
and their inclusion in regular testing for patients with ovar-
ian cancer (OC) is warranted. This would enable clinicians
to make well-grounded clinical decisions regarding the use
of PARPi. The aim of this statement is to simplify clini-
cians’ decision-making regarding indications and correct
conduct of HRD testing in patients with OC based on cur-
rent knowledge.
Landscape oftests andits choice
There are different tests available for the determining of
HRD status. Principally, there are three different catego-
ries for the determining HRD:
(1) Next-generation sequencing (NGS) assays: These
assays analyze genomic DNA to detect mutations
in genes associated with HRD, such as BRCA1 and
BRCA2, as well as other HRD-related genes.
a. Genetic Testing: mutations in the BRCA1 and
BRCA2 genes are well-established indicators of
HRD, particularly in breast and ovarian cancers.
Genetic testing can identify these mutations, and
the presence of such mutations suggests HRD. This
testing can be performed through various methods,
including targeted sequencing, multiplex ligation
dependent probe amplification (MLPA), or next
generation sequencing (NGS).
b. Homologous Recombination Deficiency Score
(HRD Score): some commercial tests, such as the
Myriad myChoice® HRD test, calculate an HRD
score based on multiple genomic markers associated
with HRD. This score is used to predict HRD and
guide treatment decisions.This test includes meas-
ures of GIS such as loss of heterozygosity (LOH),
telomeric allelic imbalance (TAI) and large-sclae
state transitions (LSTs).
(2) Genomic instability assays: these assays measure
genomic instability through various methods, such
as assessing loss of heterozygosity (LOH), telomeric
allelic imbalance (TAI), and large-scale state transi-
tions (LSTs).
a. Loss of Heterozygosity (LOH) Testing: LOH is a
common feature of HRD and is characterized by the
loss of one of the two copies of a gene in a tumor.
LOH testing can identify regions of the genome
where one copy has been lost, indicating HRD
b. Telomeric allelic imbalance (TAI) refers to an imbal-
ance in the lengths of telomeres, which are the pro-
tective caps at the ends of chromosomes, between
the two alleles of a gene. Telomeric allelic imbal-
ance is a form of genomic instability that can be
indicative of defects in DNA repair pathways, such
as homologous recombination repair (HRR), and is
associated with certain types of cancer, including
ovarian cancer.
c. Large-scale state transitions (LSTs) are structural
genomic alterations that occur on a large scale,
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1447Archives of Gynecology and Obstetrics (2025) 311:1445–1450
involving changes in chromosomal structure or
organization. These transitions may include events
such as chromosomal rearrangements, copy number
alterations, or changes in chromosome arm status.
(3) Functional assays: these assays evaluate the function-
ality of HRD repair pathways in cells, often through
laboratory-based experiments or assays measuring the
ability of cells to repair DNA damage (e.g., RAD51
Foci assay).
The following tests are clinically approved and are com-
monly accessible in Germany:
Test name Mechanism HRD-positive Patient’s probe Trial evaluated
Genetic testing
BRACAnalysis CDx test Germline mutation in BRCA1/2 Mutation detectable Blood
HRD-Test
Myriad myChoice CDx
test Mutation status of BRCA1/2 AND GIS
(gLOH + TAI + LST)
BRCA -mutation OR
GIS > 42
Tumor tissue PRIMA/PAOLA-1/
VELIA/NOVA
FoundationOne CDx
panel mutation status of BRCA1/2 AND genomic
instability (gLOH)
BRCA-mutation OR LOH-
Score ≥ 16% [8]
Tumor tissue ATHENA Mono/
ARIEL 2/3/
QUADRA
NOGGO GIS assay [9] Next Generation Sequencing (NGS)
hybrid-capture biomarker assay that
detects BRCA1/2 + 55 fur ther HRR-
relevant genes and structural alterations
to establish GIS
BRCA-mutation or
GIS > 83
Tumor tissue PAOLA-1 cohort
Geneva test [10, 11] OncoScan + number of large-scale state
transitions (nLST)
nLST threshold of 15 Tumor tissue PAOLA-1 cohort
Academic Leuven HRD
test [12]
Targeted sequencing of genome-wide
single-nucleotide polymorphisms and
coding exons of eight HR genes includ-
ing BRCA1, BRCA2, and TP53
Tumor tissue PAOLA-1 cohort
SOPHiA DDM™ Dx
HRD Solution [13]
Detects SNVs and Indels in 28 genes
involved in the HRR pathway, including
BRCA1 and BRCA2
Tumor tissue PAOLA-1 cohort
Illumina TSO 500 Low-WGS for LOH + TAI + LST Tumor tissue PAOLA-1 cohort
BRCA-like classifier
[14]
Discriminate BRCA-associated from spo-
radic cancers by employing the shrunken
centroid algorithm; low-WGS
BRCA-like > 0.5; non-
BRCA-like ≤ 0.5
Tumor tissue PAOLA-1, AGO-TR1
Regarding the cutoff values of each test, we like to under-
line that the 95% CI are generaly not reported and the inter-
pretation of values near the threshold should be discussed
interdisciplary, considering various factors and clinical
context.
Further tests that are not yet been clinically evaluated
regarding progression-free survival (PFS) and overall sur-
vival (OS) but show a high concordance to the Myriad
myChoice (reffered to as bridging) [15, 16] include:
CytoSNP: Single Nucelotid Polymorphism (SNP) Array
for LOH + TAI + LST.
Affymetrix OncoScan: Single Nucelotid Polymorphism
(SNP) Array for LOH + TAI + LST.
OncoMine: Shallow Whole Genome Sequencing (low-
WGS) for LOH-Score.
AmoyDX: low-WGS HRD focus panel for the detection
of BRCA1/2 mutation and GIS and many more.
Real-world data have shown that a genomic loss of het-
erozygosity (gLOH) (> 16%) und GIS (> 42) exhibit a sig-
nificant overlap and are clinically comparable regarding the
time to treatment discontinuation (TTD) [17].
Statement
(1) Since patients are considered HRD positive and thus
eligible for maintenance therapy with olaparib either
with a germline or somatic BRCA1/2 mutation OR GIS
positivity both GIS and BRCA1/2 status has to be evalu-
ated together for a conclusive result.
(2) Since GIS is a continuous marker to which a hard cutoff
is applied, ideally all assays used to stratify patients for
treatment decisions should have shown effectiveness by
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1448 Archives of Gynecology and Obstetrics (2025) 311:1445–1450
providing clinical PFS and ideally OS data. However,
in most settings, these data are not available due to
limited access to clinical trial specimens.
(3) A number of assays with their specific cutoffs have also
been evaluated and validated with tissue samples of the
PAOLA1 clinical trial, made available by the ENGOT/
ARC AGY [18]. For some of these assays, PFS and OS
data are available, and survival curves show highly
comparable results with comparable Hazard ratios
[9, 11, 18, 19]. Therefore, it is recommended to uti-
lize assays for which a significant clinical benefit, and
comparable PFS and OS advantages have been shown
on samples from the PAOLA-1 trial or other clinical
trials looking at outcome in HRD/HRP population.
When isit appropriate totest forHRD inOC,
andwhenisit notrecommended?
All patients diagnosed with ovarian cancer should undergo
genetic counseling and testing for BRCA1/BRCA2 and other
BRCA -related genes as recommended by guidelines. This
testing is typically included in a broad standardized panel
of the most common mutations associated with hereditary
cancer syndromes.
The following criteria should be considered for further
testing HRD in ovarian cancer:
Contextual relevance: the inclusion of the HRD test must
be made wihin the overall clinical context of the patient’s
condition and treatment plan. The ability to take oral
medications is mandatory since all PARP-inhibitors are
used orally.
Negative germline mutations: if germline mutations for
BRCA1/2 alone tested by human genetics are negative,
HRD can be persued as second test in a two-step proce-
dure. This can be performed immediately following a
negative result for germline mutations. Ideally, HRD test-
ing should be performed simultaneously with germline
testing.
Primary setting: HRD testing should ideally be con-
ducted after the initial diagnosis using tumor tissue. If
tumor tissue can not be obtained during cytoreductive
surgery, multiple minimally invasive biopsies should
be taken to gather sufficient material. The selection of
biopsy anatomic sites should prioritize obtaining a high
tumor sample size to optimize the results (further infor-
mation below). Tissue can be collected via laparoscopy
or interventional radiology.
Histological subtypes: HRD testing is particularly rel-
evant for histological subtypes such as high-grade serous,
endometrioid, and clear cell epithelial ovarian carcinoma,
as well as ovarian carcinosarcoma, following the WHO
classification of 2014 (p53-mutated).
The following criteria are not eligible for further HRD
testing:
Positive germline mutation for BRCA : the use of addi-
tional HRD testing is obsolete.
Recurrent disease or previously treated ovarian cancer:
there is a lack in clinical and preclinical trials on this
topic. HRD testing may not be reliable in the setting of
recurrent disease or pretreated cancer, as alterations in
tumor cells and the tumor microenvironment could affect
the significance of results. Patients who have already
received PARP inhibition or other immunogenic therapy
during ovarian cancer treatment should be excluded from
testing outside from clinical trials. However, therapies in
other preexisting cancer sites are not part of this exclu-
sion. If in recurrent disease a previous HRD test has
been done, there is no need to reevaluate HRD again.
If a HRD test has not been done before and if the result
supports the treatment decision making process, it can
be considered to be performed in a recurrence situation
on an individual basis.Tumor tissue obtained after neo-
adjuvant chemotherapy within the primary diagnosis: the
significance of the HRD test in tissue obtained after neo-
adjuvant chemotherapy at the time of primary diagnosis
remains unclear. Tumor necrosis at the time of interval
surgery can negatively influence the test results.
Histological subtype: all forms of low-grade epithelial
ovarian carcinoma following the WHO classification of
2014 are not eligible for further HRD testing.
Minimum requirements andstardards
forpathological examination
The molecular pathological report should include the fol-
lowing minimal information:
1. Patient identification and short clinical background:
a. Date of initial diagnosis.
b. Date of test performance.
c. Statement of previous administration of systematic
treatment.
2. Details on the assay used:
a. Name of the assay.
b. Assay performance parameters (specification of
mechanism used within the test).
c. Minimal and maximum tumor cell content.
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1449Archives of Gynecology and Obstetrics (2025) 311:1445–1450
d. Listing of all genes covered by test.
e. Sufficiency of sequencing depth (in case of NGS
assays).
f. Cut-off and threshold for a test result.
g. Clear statement on clinical test approval, its eligibil-
ity for HRD testing and name of reference.
3. Details of the specimen taken for testing:
a. Histological diagnosis (confirmation that high-grade
epithelial ovarian cancer is present).
b. Anatomic site of specimen taken.
c. Tumor cell content.
d. Statement on adequacy of sample measurements: an
adequate sample should be at least 5mm in diameter
with at least 30% tumor cell count [20]. CAVE: in
lymph node metastasis the tumor cell count can be
low due to a high amount of immunocompentent
cells (rapidly below 10%).
e. Cut-off definition: if the HRD score lies few points
beneath the medical approval of a certain drug, a
new biopsy to score a higher tumor cell count can
be considered. Moreover, an off-label use of the
drug can be discussed.
4. BRCA1/2 status:
a. Somatic mutation status of BRCA1/2, including
large deletions and information on LOH of BRCA1/2
b. classification of BRCA mutation according to con-
sensus recommendation of the American College of
Medical Genetics and Genomics and the Associa-
tion for Molecular Pathology
5. Genomic instability score as either positive or negative
according to the test specific cut-off or threshold:
6. Final HRD status based on BRCA1/2 mutation status,
GIS and other HRR-relevant genes tested (HRD + vs
HRD-).
7. If applicable, recommendation of specific drug and
name of reference.
Author contributions L.C. wrote the main manuscript text and pre-
pared the tables J.S. made substantial contributions to the conception
or design of the work All authors revised it critically for important
intellectual content and reviewed the manuscript.
Funding Open Access funding enabled and organized by Projekt
DEAL.
Data availability No datasets were generated or analysed during the
current study.
Declarations
Conflict of interests AdBoard Honorary by Myriad MyChoice Honor-
ary by GSK, ESAI and NOGGO e.V.
Open Access This article is licensed under a Creative Commons Attri-
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Authors and Aliations
LukasChinczewski1 · PhilippHarter2· LukasHeukamp3· DorisMayr4· ChristophGrimm5·
ViolaHeinzelmann‑Schwarz6· PaulineWimberger7· SvenMahner8· IoanaElenaBraicu1· WolfgangSchmitt9·
CarstenDenkert10· JalidSehouli1
* Lukas Chinczewski
Lukas.chinczewski@charite.de
1 Department forGynecology, Campus Virchow-Klinikum,
Charité–Universitätsmedizin Berlin, Berlin, Germany
2 Department forGynecology, Klinikum Essen-Mitte, Essen,
Germany
3 Institut für Hämatopathologie Hamburg, Hamburg, Germany
4 Department forPathology, Ludwig-Maximilians-Universität
München, Munich, Germany
5 Department forGynecology, Allgemeines Krankenhaus
Wien, Vienna, Austria
6 Department forGynecology, Universitätsspital Basel, Basel,
Switzerland
7 Department forGynecology, Universitätsklinikum Carl
Gustav Carus Dresden, Dresden, Germany
8 Department forGynecology,
Ludwig-Maximilians-Universität München, Munich,
Germany
9 Department forPathology, Campus Charité Mitte, Charité–
Universitätsmedizin Berlin, Berlin, Germany
10 Department forPathology, Philipps-Universität Marburg,
Marburg, Germany
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6.
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Article
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The worldwide approval of the combination maintenance therapy of olaparib and bevacizumab in advanced high-grade serous ovarian cancer requires complex molecular diagnostic assays that are sufficiently robust for the routine detection of driver mutations in homologous recombination repair (HRR) genes and genomic instability (GI), employing formalin-fixed (FFPE) paraffin-embedded tumor samples without matched normal tissue. We therefore established a DNA-based hybrid capture NGS assay and an associated bioinformatic pipeline that fulfils our institution’s specific needs. The assay´s target regions cover the full exonic territory of relevant cancer-related genes and HRR genes and more than 20,000 evenly distributed single nucleotide polymorphism (SNP) loci to allow for the detection of genome-wide allele specific copy number alterations (CNA). To determine GI status, we implemented an %CNA score that is robust across a broad range of tumor cell content (25–85%) often found in routine FFPE samples. The assay was established using high-grade serous ovarian cancer samples for which BRCA1 and BRCA2 mutation status as well as Myriad MyChoice homologous repair deficiency (HRD) status was known. The NOGGO (Northeastern German Society for Gynecologic Oncology) GIS (GI-Score) v1 assay was clinically validated on more than 400 samples of the ENGOT PAOLA-1 clinical trial as part of the European Network for Gynaecological Oncological Trial groups (ENGOT) HRD European Initiative. The “NOGGO GIS v1 assay” performed using highly robust hazard ratios for progression-free survival (PFS) and overall survival (OS), as well a significantly lower dropout rate than the Myriad MyChoice clinical trial assay supporting the clinical utility of the assay. We also provide proof of a modular and scalable routine diagnostic method, that can be flexibly adapted and adjusted to meet future clinical needs, emerging biomarkers, and further tumor entities.
Article
Full-text available
Purpose: The efficiency of the Myriad Homologous Recombination Deficiency (HRD) test to guide the use of poly (ADP-ribose) polymerase (PARP) inhibitors has been demonstrated in several phase III trials. However, a need exists for alternative clinically validated tests. Methods: A novel biomarker for HRD was developed using The Cancer Genome Atlas database and, as part of the ENGOT HRD European Initiative, applied to 469 samples from the PAOLA-1/ENGOT-ov25 trial. Results were compared with the Myriad myChoice Genomic Instability Score (GIS) with respect to the progression-free survival in the olaparib + bevacizumab and placebo + bevacizumab arms. Results: Analysis of the TCGA cohort revealed that a normalization of the number of large-scale state transitions by the number of whole-genome doubling events allows a better separation and classification of HRD samples than the GIS. Analysis of the PAOLA-1 samples, using the Geneva test (OncoScan + nLST), yielded a lower failure rate (27 of 469 v 59 of 469) and a hazard ratio of 0.40 (95% CI, 0.28 to 0.57) compared with 0.37 for Myriad myChoice (BRCAm or GIS+) in the nLST-positive samples. In patients with BRCAwt, the Geneva test identified a novel subpopulation of patients, with a favorable 1-year PFS (85%) but a poor 2-year PFS (30%) on olaparib + bevacizumab treatment. Conclusion: The proposed test efficiently separates HRD-positive from HRD-negative patients, predicts response to PARP inhibition, and can be easily deployed in a clinical laboratory for routine practice. The performance is similar to the available commercial test, but its lower failure rate allows an increase in the number of patients who will receive a conclusive laboratory result.
Article
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Assessment of homologous recombination deficiency (HRD) status is now essential for ovarian cancer patient management. The aim of our study was to analyze the influence of ethnic variations, tumor purity, and neoadjuvant chemotherapy (CT) on the determination of HRD scores as well as to evaluate feasibility of HRD testing with the Amoy HRD Focus Assay in routine clinical practice. The HRD status, including the BRCA status and genomic scar score (GSS), was analyzed in 452 ovarian cancer specimens. The successful rate of HRD testing was 86% (388/452). The BRCA mutational rate was 29% (114/388); 252 samples (65%) were classified as HRD-positive. Our data demonstrate the feasibility of internal HRD testing by the AmoyDx HRD Focus Panel for high-grade serous ovarian cancer (HGSOC), showing results similar to other methods. The HRD rate in the Russian population is very similar to those of other European populations, as is the BRCA mutation frequency. The most substantial contribution to HRD level diversity is testing criteria depending on intrahospital arrangements. The analysis shows that biallelic BRCA alterations had higher GSS compared with those with monoallelic inactivation, consistent with positive HRD status. The study indicates that grades 1–2 of the pathological response caused by chemotherapy affect HRD scores and suggests controlling for tumor purity of 40% or more as a critical factor for GSS measurement.
Article
Full-text available
Background Homologous recombination deficiency (HRD) is a phenotype that is characterized by the inability of a cell to effectively repair DNA double-strand breaks using the homologous recombination repair (HRR) pathway. Loss-of-function genes involved in this pathway can sensitize tumors to poly(adenosine diphosphate [ADP]-ribose) polymerase (PARP) inhibitors and platinum-based chemotherapy, which target the destruction of cancer cells by working in concert with HRD through synthetic lethality. However, to identify patients with these tumors, it is vital to understand how to best measure homologous repair (HR) status and to characterize the level of alignment in these measurements across different diagnostic platforms. A key current challenge is that there is no standardized method to define, measure, and report HR status using diagnostics in the clinical setting. Methods Friends of Cancer Research convened a consortium of project partners from key healthcare sectors to address concerns about the lack of consistency in the way HRD is defined and methods for measuring HR status. Results This publication provides findings from the group’s discussions that identified opportunities to align the definition of HRD and the parameters that contribute to the determination of HR status. The consortium proposed recommendations and best practices to benefit the broader cancer community. Conclusion Overall, this publication provides additional perspectives for scientist, physician, laboratory, and patient communities to contextualize the definition of HRD and various platforms that are used to measure HRD in tumors.
Article
Importance Testing for homologous recombination deficiency is required for the optimal treatment of high-grade epithelial ovarian cancer. The search for accurate biomarkers is ongoing. Objective To investigate whether progression-free survival (PFS) and overall survival (OS) of patients with high-grade epithelial ovarian cancer treated with maintenance olaparib or placebo differed between patients with a tumor BRCA -like genomic profile and patients without a tumor BRCA -like profile. Design, Setting, and Participants This cohort study was a secondary analysis of the PAOLA-1 randomized clinical trial that compared olaparib plus bevacizumab with placebo plus bevacizumab as maintenance treatment in patients with advanced high-grade ovarian cancer after a good response to first-line platinum with taxane chemotherapy plus bevacizumab, irrespective of germline or tumor BRCA1/2 mutation status. All patients with available tumor DNA were included in the analysis. The current analysis tested for an interaction between BRCA -like status and olaparib treatment on survival outcomes. The original trial was conducted between July 2015 and September 2017; at the time of data extraction for analysis in March 2022, a median follow-up of 54.1 months (IQR, 28.5-62.2 months) and a total follow-up time of 21 711 months was available, with 336 PFS and 245 OS events. Exposures Tumor homologous recombination deficiency was assessed using the BRCA -like copy number aberration profile classifier. Myriad MyChoice CDx was previously measured. The trial was randomized between the olaparib and bevacizumab and placebo plus bevacizumab groups. Main Outcomes and Measures This secondary analysis assessed hazard ratios (HRs) of olaparib vs placebo among biomarker strata and tested for interaction between BRCA -like status and olaparib treatment on PFS and OS, using Cox proportional hazards regression. Results A total of 469 patients (median age, 60 [range 26-80] years) were included in this study. The patient cohort consisted of women with International Federation of Gynaecology and Obstetrics stage III (76%) high-grade serous (95%) ovarian cancer who had no evaluable disease or complete remission at initial or interval debulking surgery (76%). Thirty-one percent of the tumor samples (n = 138) harbored a pathogenic BRCA mutation, and BRCA -like classification was performed for 442 patients. Patients with a BRCA -like tumor had a longer PFS after olaparib treatment than after placebo (36.4 vs 18.6 months; HR, 0.49; 95% CI, 0.37-0.65; P < .001). No association of olaparib with PFS was found in patients with a non– BRCA -like tumor (17.6 vs 16.6 months; HR, 1.02; 95% CI, 0.68-1.51; P = .93). The interaction was significant ( P = .004), and HRs and P values (for interaction) were similar in the relevant subgroups, OS, and multivariable analyses. Conclusions and Relevance In this secondary analysis of the PAOLA-1 randomized clinical trial, patients with a BRCA -like tumor, but not those with a non– BRCA -like tumor, had a significantly longer survival after olaparib plus bevacizumab treatment than placebo plus bevacizumab treatment. Thus, the BRCA1- like classifier could be used as a biomarker for olaparib plus bevacizumab as a maintenance treatment.
Article
5588 Background: SOPHiA DDM Dx HRD Solution (SOPHiA GENETICS, SA) combines analysis of genomic instability with mutational status of HRR genes, including BRCA1/2, generated through a single genomic workflow in order to to predict Homologous Recombination Deficiency (HRD) status in ovarian cancer (OvCa) samples. Previous evaluation of SOPHiA DDM Dx HRD Solution demonstrated its results to be highly concordant with a reference HRD method. As part of the ENGOT HRD initiative, we present updated clinical relevance results of SOPHiA DDM Dx HRD Solution. Methods: GINECO/ENGOT-Ov25 PAOLA-1 trial randomized (2:1) 804 patients (pts) to receive after the end of first-line platinum-based chemotherapy either maintenance olaparib+bevacizumab or placebo+bevacizumab for up to 2 years. DNA from a sub-cohort of 384 formalin-fixed paraffin-embedded (FFPE) OvCa pts samples included in the PAOLA-1 clinical trial were analyzed using SOPHiA DDM Dx HRD Solution(*). We combined SOPHiA DDM Dx HRD Solution genomic instability score, with BRCA mutational status obtained from a Clinical Decision Support module, and clinical interpretation of Variants of Unknown Significance to establish the pts HRD status and investigated differences in progression-free survival (PFS) in the olaparib+bevacizumab and placebo+bevacizumab arms between pts with HRD positive or HRD negative test. Results: We determined the HRD status of 98.4% of pts using SOPHiA DDM Dx HRD Solution. The median PFS time for pts with HRD positive tumors was 35.7 months longer in the olaparib+bevacizumab arm than in the placebo+bevacizumab arm (hazard ratio [HR], 0.36; 95% confidence interval [CI], 0.25-0.51, p< 0.001), confirming the findings of our previous interim analysis. No significant difference in PFS was observed between treatment arms in pts with HRD negative test (HR, 1.02; 95% CI, 0.71-1.48; p= 0.90). Conclusions: These clinical relevance results from the SOPHiA DDM Dx HRD Solution evaluation on the PAOLA-1 samples further support the value of combining low-pass whole genome and targeted sequencing in a unique workflow for reliable and cost-effective HRD testing and future patient stratification. (*) Comparison data generated using the CE-IVD pipeline with Clinical Decision Support module for BRCA status only available in EU, Switzerland, UK.
Article
Background: In the PAOLA-1/ENGOT-ov25 primary analysis, maintenance olaparib plus bevacizumab demonstrated a significant progression-free survival (PFS) benefit in newly diagnosed advanced ovarian cancer patients in clinical response after first-line platinum-based chemotherapy plus bevacizumab, irrespective of surgical status. Prespecified, exploratory analyses by molecular biomarker status showed substantial benefit in patients with a BRCA1/BRCA2 mutation (BRCAm) or homologous recombination deficiency (HRD; BRCAm and/or genomic instability). We report the prespecified final overall survival (OS) analysis, including analyses by HRD status. Patients and methods: Patients were randomized 2:1 to olaparib (300 mg bid; up to 24 months) plus bevacizumab (15 mg/kg q3w; 15 months total) or placebo plus bevacizumab. Analysis of OS, a key secondary endpoint in hierarchical testing, was planned for ∼60% maturity or 3 years after the primary analysis. Results: After median follow-up of 61.7 and 61.9 months in the olaparib and placebo arms, respectively, median OS was 56.5 versus 51.6 months in the ITT (hazard ratio [HR]=0.92, 95% CI 0.76-1.12; P=0.4118). Subsequent poly(ADP-ribose) polymerase (PARP) inhibitor therapy was received by 105 (19.6%) olaparib patients versus 123 (45.7%) placebo patients. In the HRD-positive population, OS was longer with olaparib plus bevacizumab (HR=0.62, 95% CI 0.45-0.85; 5-year OS rate, 65.5% versus 48.4%); at 5 years, updated PFS also showed a higher proportion of olaparib plus bevacizumab patients without relapse (HR=0.41, 95% CI 0.32-0.54; 5-year PFS rate, 46.1% versus 19.2%). Myelodysplastic syndrome, acute myeloid leukemia, aplastic anemia, and new primary malignancy incidence remained low and balanced between arms. Conclusions: Olaparib plus bevacizumab provided clinically meaningful OS improvement for first-line patients with HRD-positive ovarian cancer. These prespecified exploratory analyses demonstrated improvement despite a high proportion of patients in the placebo arm receiving PARP inhibitors post-progression, confirming the combination as one of the standards of care in this setting with the potential to enhance cure.
Article
Background: The PAOLA-1/ENGOT-ov25 trial showed improved progression-free (PFS) and overall survival (OS) in homologous recombination deficient (HRD) positive patients treated with olaparib, but not when HRD negative (HRD tested with MyChoice CDx PLUS [Myriad test]). Patients and methods: The academic Leuven HRD test consists of capture-based targeted sequencing of genome-wide single-nucleotide polymorphisms and coding exons of eight HR genes including BRCA1, BRCA2, and TP53. We compared the predictive value of the Leuven HRD versus Myriad HRD test for PFS and OS in the randomised PAOLA-1 trial. Results: 468 patients had left-over DNA after Myriad testing for Leuven HRD testing. Positive/negative/overall percent agreement for the Leuven versus Myriad HRD status was 95%/86%/91%, respectively. Tumours were HRD+ in 55% and 52%, respectively. In Leuven HRD+ patients, 5years PFS (5yPFS) was 48.6% versus 20.3% (HR 0.431; 95% confidence intervals (CI) 0.312-0.595) for olaparib versus placebo, respectively (Myriad test 0.409; 95% CI 0.292-0.572). In Leuven HRD+/BRCAwt patients 5yPFS was 41.3% versus 12.6% (HR 0.497; 95% CI 0.316-0.783), and 43.6% versus 13.3% (HR 0.435; 95% CI 0.261-0.727) for the Myriad test. 5yOS was prolonged in the HRD+ subgroup with both tests 67.2% versus 54.4% (HR 0.663; 95% CI 0.442-0.995) for the Leuven test, and 68.0% versus 51.8% (HR 0.596 95% CI 0.393-0.904) for the Myriad test. HRD status was undetermined in 10.7% and 9.4% of the samples, respectively. Conclusions: A robust correlation between the Leuven HRD and Myriad test was observed. For HRD+ tumours, the academic Leuven HRD showed a similar difference in PFS and OS as the Myriad test.
Conference Paper
Introduction/Background The efficacy of the Myriad myChoice® Homologous Recombination Deficiency (HRD) test to guide use of PARP inhibitors has been demonstrated in several phase III trials. However, its high failure rate and limited accessibility establish a need for a clinically validated laboratory developed test. Methodology As part of the ENGOT HRD European Initiative, a subset of the PAOLA-1/ENGOT-ov25 phase 3 trial was analyzed in the Geneva University Hospitals with the OncoScan™ CNV Assay and an in-house algorithm developed using TCGA data. Results were compared to Myriad myChoice Genomic Instability Score (GIS) with respect to the progression-free survival in the Olaparib+Bev and placebo+Bev arms. Results The analysis of the TCGA cohort revealed that a normalization of the number of LST (large-scale state transitions) by the number of whole-genome doubling events allows a better separation and classification of HRD samples than the Myriad GIS. On the 469 PAOLA-1 samples, the Geneva test yielded a lower failure rate than Myriad (10/469 vs 59/469 inconclusive results) and positive and negative agreement values of 96% (204/213) and, respectively, 81% (159/197). In Geneva HRD-positive samples, the hazard ratio (HR) was 0.40 (95% CI: 0.28–0.57; figure 1). For Myriad, the HR was 0.35. In BRCA wild-type and Geneva HRD-positive samples, the HR was 0.53 (Myriad: 0.41). Of note, in this subpopulation the Geneva test and the Myriad test yielded a similar 1-year PFS (87% and 88%) but a different 2-year PFS (52% vs 60%). • Download figure • Open in new tab • Download powerpoint Abstract 2022-RA-567-ESGO Figure 1 Conclusion The proposed test is a viable alternative to the Myriad myChoice HRD test and can easily be implemented in a clinical laboratory for routine practice. The performance of the tests is similar in terms of hazard ratio but the lower failure rate of the Geneva HRD test allows a 10% increase in the number of patients receiving a conclusive laboratory result.
Article
Background: PARP inhibitors (PARPi) are approved for multiple indications with ongoing trials to explore broader utility. However, identifying the right patients for these therapies across multiple disease types remains a challenge. In ovarian cancer, genomic-scar based measures for homologous recombination deficiency (HRD) are approved diagnostics (genome-wide LOH [gLOH] and genomic instability score [GIS]); however, broader utility has not been established. Methods: A pan-cancer genomic profiling dataset (n = 202,472; Foundation Medicine, Cambridge, MA) was split 70:30 for training and validation of an HRD signature using an XGB machine learning model (mlHRD). A broad set of copy number (Macintyre 2018) and indel features (Alexandrov 2020) were used to identify signatures of HRD. gLOH (Coleman 2017) and GIS (Timms 2014) were calculated using copy number profiles. Biallelic alterations were predicted using a computational zygosity algorithm (Sun, 2018). The nationwide, de-identified Flatiron Health-Foundation Medicine ovarian and prostate clinico-genomic databases (FH-FMI CGDB) were utilized for outcomes analysis. The de-identified data originated from approximately 280 US cancer clinics (~800 sites of care). Time to therapy discontinuation (TTD) was estimated with Kaplan-Meier analysis. Hazard ratios were calculated using unadjusted Cox proportional Hazard models. Results: We developed an algorithm to predict HRD status using indel and copy number features (see methods). Across the pan-cancer dataset, the rate of mlHRD was 6.4% with the highest frequency in fallopian tube (30%), ovarian (30%), peritoneal (23%), breast (16%), and prostate cancers (15%). Sensitivity to detect biallelic BRCA1/2 alterations was high across tumors [ovary (93%), prostate (87%), breast (85%), pancreas (80%)]. Beyond BRCA1/2, mlHRD positivity was associated with biallelic alterations in RAD51D (OR = 24, p<1E-10), PALB2 (OR = 23, p<1E-10), BARD1 (OR = 23, p<1E-10), and RAD51C (OR = 19, p<1E-10). In the FH-FMI CGDB ovarian cancer cohort, 150 patients were treated with PARPi (mlHRD positive = 73; negative = 77); mlHRD positivity was associated with improved TTD (median 8.9 mo v 3.9 mo; HR = 0.49 [0.34-0.71], p < 0.001), with similar predictive power to gLOH >16% (HR = 0.55 [0.38-0.79], p = 0.001) and GIS >42 (HR = 0.59 [0.41-0.86], p = 0.006). For 62 patients with prostate cancer treated with PARPi (mlHRD positive = 27; negative = 35), mlHRD was associated with prolonged TTD on PARPi (median 6.8 mo v 3.4 mo; HR = 0.56 [0.30-1.03], p = 0.064), trending more predictive than gLOH >8.29% (Sokol 2020) and GIS >42 (HR = 0.64 [0.29-1.40] and 0.80 [0.37-1.73], respectively; p>0.05). Conclusion: These findings suggest that HRD is associated with genomic scarring beyond ovarian cancer. Additional retrospective and prospective analyses in clinical datasets are needed to explore the utility of this signature. Citation Format: Emmanuel Antonarakis, Jay Moore, Dexter Jin, Tim Chen, Justin Newberg, Zoe Fleischmann, Karthikeyan Murugesan, Garrett Frampton, David Fabrizio, Russell Madison, Ethan Sokol. Development of a pan-cancer algorithm to predict homologous recombination deficiency and sensitivity to PARPi therapy [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 1249.