ArticlePDF Available

Abstract and Figures

Background Prion diseases, also known as transmissible spongiform encephalopathies (TSEs) remain one of the deleterious disorders, which have affected several animal species. Polymorphism of the prion protein (PRNP) gene majorly determines the susceptibility of animals to TSEs. However, only limited studies have examined the variation in PRNP gene in different Nigerian livestock species. Thus, this study aimed to identify the polymorphism of PRNP gene in Nigerian livestock species (including camel, dog, horse, goat, and sheep). We sequenced the open reading frame (ORF) of 65 camels, 31 village dogs and 12 horses from Nigeria and compared with PRNP sequences of 886 individuals retrieved from public databases. Results All the 994 individuals were assigned into 162 haplotypes. The sheep had the highest number of haplotypes (n = 54), and the camel had the lowest (n = 7). Phylogenetic tree further confirmed clustering of Nigerian individuals into their various species. We detected five non-synonymous SNPs of PRNP comprising of G9A, G10A, C11G, G12C, and T669C shared by all Nigerian livestock species and were in Hardy-Weinberg Equilibrium (HWE). The amino acid changes in these five non-synonymous SNP were all “benign” via Polyphen-2 program. Three SNPs G34C, T699C, and C738G occurred only in Nigerian dogs while C16G, G502A, G503A, and C681A in Nigerian horse. In addition, C50T was detected only in goats and sheep. Conclusion Our study serves as the first to simultaneously investigate the polymorphism of PRNP gene in Nigerian livestock species and provides relevant information that could be adopted in programs targeted at breeding for prion diseases resistance.
This content is subject to copyright. Terms and conditions apply.
RESEARCH Open Access
© The Author(s) 2024. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use,
sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and
the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this
article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included
in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will
need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The
Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available
in this article, unless otherwise stated in a credit line to the data.
Adeola et al. BMC Genomics (2024) 25:177
https://doi.org/10.1186/s12864-024-10070-2 BMC Genomics
Adeniyi C. Adeola, Semiu F. Bello, Abdussamad M. Abdussamad,
Rahamon A. M. Adedokun authors contributed equally to this work.
*Correspondence:
Adeniyi C. Adeola
chadeola@mail.kiz.ac.cn
Full list of author information is available at the end of the article
Abstract
Background Prion diseases, also known as transmissible spongiform encephalopathies (TSEs) remain one of the
deleterious disorders, which have aected several animal species. Polymorphism of the prion protein (PRNP) gene
majorly determines the susceptibility of animals to TSEs. However, only limited studies have examined the variation in
PRNP gene in dierent Nigerian livestock species. Thus, this study aimed to identify the polymorphism of PRNP gene
in Nigerian livestock species (including camel, dog, horse, goat, and sheep). We sequenced the open reading frame
(ORF) of 65 camels, 31 village dogs and 12 horses from Nigeria and compared with PRNP sequences of 886 individuals
retrieved from public databases.
Results All the 994 individuals were assigned into 162 haplotypes. The sheep had the highest number of haplotypes
(n = 54), and the camel had the lowest (n = 7). Phylogenetic tree further conrmed clustering of Nigerian individuals
into their various species. We detected ve non-synonymous SNPs of PRNP comprising of G9A, G10A, C11G, G12C,
and T669C shared by all Nigerian livestock species and were in Hardy-Weinberg Equilibrium (HWE). The amino acid
changes in these ve non-synonymous SNP were all “benign” via Polyphen-2 program. Three SNPs G34C, T699C, and
C738G occurred only in Nigerian dogs while C16G, G502A, G503A, and C681A in Nigerian horse. In addition, C50T was
detected only in goats and sheep.
Conclusion Our study serves as the rst to simultaneously investigate the polymorphism of PRNP gene in Nigerian
livestock species and provides relevant information that could be adopted in programs targeted at breeding for prion
diseases resistance.
Keywords Scrapie, Susceptibility, Prion protein gene, Polymorphism, Livestock, Nigeria
Single nucleotide polymorphisms (SNPs)
in the open reading frame (ORF) of prion
protein gene (PRNP) in Nigerian livestock
species
Adeniyi C.Adeola1,2*†, Semiu F.Bello3†, Abdussamad M.Abdussamad4†, Rahamon A. M.Adedokun5†,
Sunday C.Olaogun5, NasiruAbdullahi6, Akanbi I.Mark7, Anyebe B.Onoja8, Oscar J.Sanke9, Godwin F.Mangbon10,
JebiIbrahim11, Philip M.Dawuda12, Adebowale E.Salako13, SamiaKdidi14 and Mohamed HabibYahyaoui14
Content courtesy of Springer Nature, terms of use apply. Rights reserved.
Page 2 of 8
Adeola et al. BMC Genomics (2024) 25:177
Background
Prion diseases also known as Transmissible spongiform
encephalopathies (TSEs) remain one of the deleterious
disorders [1], which have affected several animal spe-
cies [2, 3]. e unique characterization of Prion diseases
is the accumulation of an “infectious” abnormal prote-
ase-resistant isoform (PrPSc) of cellular prion proteins
(PrPC) encrypted by the prion protein (PRNP) gene [4].
e prion gene family consist of four members namely
prion protein gene (PRNP), the prion-like protein gene
(PRND), the shadow of the prion protein gene (SPRN),
and the prion-related gene (PRNT) [5]. Although only
Shadoo (Sho) protein is enclosed by the SPRN gene, and
its structure is similar to the PrP protein. e PRND is
nearly situated in 20kb downstream of the PRNP gene,
and PRND possess a similar structure with PrP [6]. Prion
protein genes are highly maintained among mammals
[7] and predominantly synthesized in cells of the central
nervous system [8]. Although, it is also expressed in dif-
ferent peripheral tissues [9, 10]. Interestingly, in the cen-
tral nervous system and lymphoid tissues, TSE diseases
encompass a neuronal glycoprotein (i.e. Prion protein)
PrPC (encoded by PRNP gene), which is regenerated into
an abnormal protease-resistant protein [11, 12]. Prion
diseases are grouped as sporadic, familial, and infec-
tious forms and contains two exons with second one car-
rying the whole open reading frame (ORF) in humans
[13]. It was reported that about 85% of prion diseases in
humans are Creutzfeldt–Jakob disease (CJD) while 15%
of the prion diseases include familial CJD, Gerstmann–
Straussler–Scheinker syndrome (GSS), and fatal familial
insomnia (FFI) [1416]. Another study has reported the
nature of the infectious agents- PrP models of resistant
species including dog, rabbit and horses to prion diseases
[17]. e β2-α2 loop contributes to their protein struc-
tural stabilities while salt bridge contributed to structural
stability of horse prion protein [18].
Prion diseases are the sole human neurodegenerative
disorders with true associates with mammals thereby
enabling rodent suitable models to comprehend the
mechanisms of disease transmission and pathogenesis.
Scrapie is a detrimental neurodegenerative prion mal-
ady and has spread across almost all regions worldwide
[19, 20] leading to spongiform brain pathology, brain
deposition of misfolded among others. Known for over
250 years, scrapie is one of the TSE and encompasses
zoonotic bovine spongiform encephalopathy (BSE) in
cattle and Creutzfeldt–Jakob disease (CJD) in humans,
which are regulated by the prion protein-encoding gene
(PRNP) [2123]. It has been reported that the resistance
to scrapie is intently regulated by SNPs of the PRNP
gene and controlled by the prion disease agent [7, 24],
and the distribution of SNPs at the ORF of PRNP gene
in various species was presented [25]. In 1986, classical
BSE was first reported in United Kingdom (UK) and
has spread through PrPSc affected meat and bone meal.
However, different surveillance approaches have been
adopted to prevent utilization of contaminated feed and
this has drastically reduced the number of classical BSE
cases [26]. It was reported that the insertion of G allele
at codon 46 of SPRN gene in humans with variant CJD
causes a frameshift of this gene and it displays a signifi-
cant disparity in its distribution between healthy controls
and vCJD patients [27]. Moreover, it was reported that
somatic mutation of humans’ PRNP was predicted to be
one of the factors responsible for prion disease [16]. Also,
scrapie could affect small ruminants including sheep and
goats [28]. In addition, most forms of TSEs affect differ-
ent mammalian species but display high dominance in
ruminants such as scrapie in goats and sheep [29].
Our previous studies revealed that the SNP sites at
codons 139S, 146S, 154H, and 193I were presence in
Nigerian goats [30] which have been reported to be
susceptible to scrapie in goats [28, 31], and also codons
154H and 171Q susceptible to classical scrapie in sheep
[32, 33] detected in Nigerian sheep [34].
Camelus dromedarius are vastly found in the semi-
arid northern part of Nigeria and their estimates is about
289,794 heads [35]. ey are basically reared for meat,
milk, wool, source of transportation, beauty spectacle,
and recreational activities [35]. Nigerian village dogs are
one of the major sources of the transmission of infec-
tious diseases [36], horses from Nigeria are useful for
entertainment, polo games, ceremonies, research, riding
etc. [37]. Nigerian sheep are reared in the drier agro-cli-
matic zones of the country with an estimated population
of 27million [38]. ere are four major breeds of Nige-
rian sheep: Yankasa, Uda, Balami, and West Africa Dwarf
[39]. Nigerian goats are hardy, tolerant to trypanosomi-
asis, and adapt easily to the local ecosystem [40]. ere
are three main indigenous breeds of Nigerian goats: West
African Dwarf (WAD), Sokoto Red and Sahelian [4143].
erefore, this study was designed to understand the
PRNP gene sequence variation in different Nigerian
livestock species and provide insight into their resis-
tance to prion diseases. Herein, we combined the PRNP
sequences of five Nigerian livestock species (camel, dog,
horse, sheep, and goat) and analyzed the prion genes. In
addition, we retrieved the nucleotide sequences of PRNPs
from other mammalians for the SNP analyses.
Results
Haplotype analysis of the 994 sequences of PRNP gene
A total of 994 PRNP gene sequences were analyzed,
including 108 de novo and 886 downloaded from Gen-
Bank. All the PRNP sequences were assigned into 162
haplotypes (Additional File 1). e sheep had the highest
Content courtesy of Springer Nature, terms of use apply. Rights reserved.
Page 3 of 8
Adeola et al. BMC Genomics (2024) 25:177
number of haplotypes (n = 54), and the camel had the
lowest (n = 7).
Phylogenetic tree based on number of haplotypes
Based on the 162 haplotypes, 180 individuals includ-
ing Nigerian species and those retrieved sequences were
selected to construct the phylogenetic tree. Figure 1
showed the phylogenetic tree from the analysis of PRNP
sequences of five Nigerian species together with reported
PRNP sequences of Homo sapiens and Macaca mulatta
as outgroups. e phylogenetic tree further confirmed
clustering of Nigerian individuals into their various
species.
Single nucleotide polymorphism (SNPs) of PRNP gene in
the ve Nigerian species
We detected five non-synonymous SNPs of PRNP namely
G9A, G10A, C11G, G12C, and T669C in all Nigerian
species considered when combined with nucleotide
sequences retrieved from public database (Table1). Fur-
ther, we determined the genotype and allele frequencies
of the five non-synonymous SNPs detected in Nigerian
livestock species and were in Hardy-Weinberg Equilib-
rium (HWE) (Table2). Based G34C, T699C, and C738G
occurred only in PRNP of Nigerian dog while C16G,
G502A, G503A, and C681A were identified in Nigerian
horse only. In addition, C50T was detected in goat and
sheep only. Table 1 shows the non-synonymous SNPs
detected in Nigerian livestock species. All SNPs identi-
fied in Nigerian livestock species are listed in Additional
Table1.
Assessment of the eects of the non-synonymous SNPs
PolyPhen-2 is an online tool used to predict the possible
impact of an amino acid replacement caused by nonsyn-
onymous SNPs on the structure and function of proteins
[44]. Based on the polymorphism results, effects of the
five non-synonymous SNPs common in the five Nige-
rian livestock species considered were assessed via Poly-
Phen-2. It was predicted that the amino acid substitution
in the five non-synonymous SNPs was benign (Table3).
Discussion
e polymorphism of the PRNP gene plays a great role
in the susceptibility of animals to prion protein diseases.
In horses, the stability of prion protein is associated with
disease progression.
Previous studies have identified single nucleotide
mutations at codons 136 (A > V), 154 (R > H), and 171
(R > Q/H) of PRNP gene [45, 46]. Interestingly, the varia-
tion of amino acids at codons 141 and 154 were reported
to be related to various forms of classical scrapie by
altering the configuration of prion protein [47, 48]. In
Fig. 1 Phylogenetic tree of PRNP sequences of Nigerian livestock species and other species
Content courtesy of Springer Nature, terms of use apply. Rights reserved.
Page 4 of 8
Adeola et al. BMC Genomics (2024) 25:177
addition, the changes in amino acids A to V and Q to
R at codons 136 and 171, respectively were reported to
increase resistance to scrapie in sheep [20, 45].
e susceptibility of small ruminants (i.e. goat and
sheep) to scrapie are affected by the genetic variation of
the PRNP gene. Goats and sheep share about 99% protein
sequence homology for their prion proteins. Although,
the fragments of their amino acids associated with scra-
pie vulnerability are not similar [5, 21]. PRNP genes are
highly polymorphic in goats [4952], and the distribu-
tions of genotype and haplotype frequencies at codons
139, 146, and 154 were highly associated with vulnerabil-
ity to scrapie in goats [50, 52].
We combined the PRNP sequences of five Nigerian
livestock species (camel, dog, goat, horse, and sheep) and
retrieved sequences of human, monkey, camel, dog, goat,
sheep, goat, mule deer, Rocky Mountain elk and fallow
deer from available databases. We detected 162 haplo-
types using the 994 sequences (Additional File 3). Based
on the phylogenetic tree when Homo sapiens and Macaca
mulatta are outgroups shows the clustering of Nigerian
individuals into their various species (Fig.2). e sheep
had the highest number of haplotypes (n = 54), and the
camel had the lowest (n = 7). We assumed that the Nige-
rian sheep might be more susceptible to prion related
disease than the other four Nigerian livestock species
(goat, dog, horse, and camel).
Further, based on the SNP analysis, we detected five
non-synonymous SNPs of PRNP namely G9A, G10A,
C11G, G12C, and T669C in all Nigerian species consid-
ered as shown in Table1. e result shows that the five
Nigerian livestock species might be susceptible to prion
related diseases. ese SNP sites are unique to the Nige-
rian livestock species considered in this study. Contrarily,
previous studies on polymorphism of PRNP gene in
Nigerian small ruminants, 29 SNPs (14 non-synonymous
and 23 novel SNPs) and 19 SNPs (14 non-synonymous
SNPs with T718C as a novel SNP) were revealed in Nige-
rian goats and sheep, respectively [30, 34]. Recent stud-
ies have reported low variation in dromedary PRNP gene
in Egypt and Iran [53, 54]. Two non-synonymous SNPs
(G205A and G401A) were identified in PRNP gene in
Algerian dromedary [55] but not detected in the present
study for Nigerian camel. It has been reported that dog
are resistance to prion infection due to change of aspara-
gine at codon 163 [56]. In a previous study, the substitu-
tions of amino acids at canine shadow of prion protein
(Sho) were all neutral except 70_71DelAA that was del-
eterious [57]. Previous study on prion protein gene iden-
tified only one non-synonymous SNP at c.525A (N175K)
in oroughbred horse [58]. Based on PolyPhen-2, it was
predicted that the amino acid substitution in the five
non-synonymous SNPs common to all the Nigerian live-
stock species was benign (tolerant).
Conclusion
is preliminary study aims to examine the single nucle-
otide polymorphism (SNP) in the open frame region
(ORF) of PRNP in Nigerian livestock species. Based on
our results, we detected five non-synonymous SNPs of
Table 1 The variation of non-synonymous single nucleotide
polymorphism (SNPs) of PRNP in the ve Nigerian livestock
species
SNP
location
Changes in Amino acid Species
G9A M3K All species
G10A M3K All species
C11G M3K All species
G12C A4S All species
C16G N5K Horse
C24T C8G goat, sheep
G30T M10I All species
G34C V12L Dog
C50T A16V Goat, sheep
A51G T17M Camel, sheep, and goat
C287G T96S/A Dog, goat, and sheep
A296G S98G 21 goat individuals
G340C M113V 2 sheep individuals
T432C S144N Camel
C480G N160E 3 dog individuals
G501A M167V Horse
G502A M167V Horse
G503A M167V Horse
G505C D168S Dog, camel, goat and sheep
A506G D168S 2 sheep individuals
T508G D168S 8 sheep individuals
C510T Y170D Goat and sheep
C522A N174K 24 sheep individuals
A524G N174K Camel
C534T H178R Dog, goat and sheep
T612C
T612G
V204M/I Horse and camel
Dog
G618A M206I Horse, camel, goat and sheep
G660A E220Q 1 individual dog
G662A E220Q Horse and dog
G663A R221Q Horse, camel, goat and sheep
T669C S223Y All species
G670G S223Y Dog and camel
A678C
A678G
Y226F/S Dog
Camel, goat and sheep
T679C Y226F/S Horse
C681A Y227Q Horse
G693A
G693C
S231A Dog, goat and sheep
Camel
T699C M233A Dog
G700A M233A Dog, camel, goat and sheep
T711C
T711G
S237P Horse, camel, goat and sheep
Dog
C738G F246L Dog
Content courtesy of Springer Nature, terms of use apply. Rights reserved.
Page 5 of 8
Adeola et al. BMC Genomics (2024) 25:177
PRNP namely G9A, G10A, C11G, G12C, and T669C in
all Nigerian species. We assumed that Nigerian livestock
species might be susceptible to prion related diseases
based on these codons identified in our current study.
Our preliminary study provides baseline information on
prion gene polymorphism in Nigerian livestock species
and subsequent studies will examine the functional rela-
tionship between clinical signals with prion SNPs from
our genomic studies in connection with genotypes of
prion protein. In addition, future studies will incorporate
large sample size, utilize different coat colors, detect the
prevalence of pion protein disease, and functional analy-
ses in PRNP gene in Nigerian animals.
Materials and methods
Samplings and DNA extraction
We collected about 10ml of blood samples from 65 cam-
els (25 males and 40 females) from four states in Nige-
ria including: Kaduna (n = 19 males; n = 26 females),
Sokoto (n = 5 males ; n = 5 females), Kebbi (n = 1 male; n = 7
females), and Katsina (n = 2 females), 31 village dogs from
Oyo (n = 10 males; n = 8 females) and Taraba (n = 6 males;
n = 7 females) and 12 horses from Oyo (n = 5) and Taraba
(n = 7) states (Fig. 2, Additional File 2). During sample
collection, we avoided individuals from clustered popu-
lations. e whole blood samples were stored at -20 C
prior to DNA extraction. Genomic DNA was extracted
at Kunming Institute of Zoology, Chinese Academy of
Sciences (CAS), using the phenol-chloroform method
[59]. We quantified the genomic DNA using the ermo
Scientific™ NanoDrop 2000 spectrophotometer to evalu-
ate its purity. In addition, to check for molecular quality,
we ran gel electrophoresis of the genomic DNA using
a 2% agarose gel against a 2 Kilobase (kb) DNA ladder
marker. In addition, we retrieved nucleotide sequences of
PRNP of 126 sheep [34] and 132 goats [30] from Nigeria,
human, monkey, camel, dog, sheep, goat and horse indi-
viduals from database (Additional File 2).
Polymerase chain reaction (PCR) and DNA sequencing
We amplified the base pairs of the PRNP gene in the ani-
mals to reveal its variable sites. Primers from each animal
were designed based on the nucleotide sequence of the
PRNP gene retrieved from the NCBI website (Additional
Table2). e 25 µl PCR mixture and sequencing reac-
tions contained 1µl of genomic DNA,10 pmol of each
primer, 2.5mM dNTPs and 5 units of Takara Taq DNA
polymerase in a 10 pmol reaction buffer containing 1.5
mM MgCl2.
e PCR was carried out in a thermocycler (detailed
PCR reactions of each species is presented in Additional
File 3. PCR products were purified for sequencing analy-
sis with a QIAquick Gel Extraction Kit (Qiagen, Valencia,
California, USA). e PCR products were bidirectionally
sequenced using an ABI 3730XL sequencer (Applied Bio-
systems, Foster City, California, USA).
Sequences alignment, haplotype, phylogenetic and
statistical analyses
e sequences were aligned with MEGA (v.11.0.8) [60].
Nucleotide and amino acid alignments were produced
using ClustalW and adjusted manually. We computed
genetic distances using MEGA (v.11.0.8). e number
Table 2 Genotype and allele frequencies of the ve non-synonymous SNPs detected in Nigerian livestock species
Genotype frequency, n (%) Allele frequency, n (%) HWE
GG GA AA G A
G9A 0 (0.00) 0 (0.00) 366 (1.00) 0 (0.00) 732 (100.00) > 0.001
M3K
GG GA AA G A
G10A 0 (0.00) 0 (0.00) 366 (1.00) 0 (0.00) 732 (100.00) > 0.001
M3K
CC CG GG C G
C11G 0 (0.00) 0 (0.00) 366 (1.00) 0 (0.00) 732 (100.00) > 0.001
M3K
GG GC CC G C
G12C 0 (0.00) 0 (0.00) 366 (1.00) 0 (0.00) 732 (100.00) > 0.001
A4K
TT TC CC T C
T669C 0 (0.00) 0 (0.00) 366 (1.00) 0 (0.00) 732 (100.00) > 0.001
S223Y
HWE: Hardy Weinberg Equilibrium
Table 3 Measurement of the eect of amino-acid substitutions
of PRNP nonsynonymous SNPs in the ve Nigerian livestock
species using PolyPhen-2
Position AA1AA2Score Prediction
3 M K 0.000 Benign
4 A S 0.001 Benign
223 S Y 0.006 Benign
Content courtesy of Springer Nature, terms of use apply. Rights reserved.
Page 6 of 8
Adeola et al. BMC Genomics (2024) 25:177
of haplotypes in the 994 sequences was analyzed using
DnaSP 6 [61]. Further, we determined the distance matri-
ces under the assumptions of Kimura’s two-parameter
model and were adopted to infer dendrograms by the
neighbor-joining method [62]. e confidence values for
individual branches of the resulting tree were determined
by bootstrap analysis with 1000 replicates [63]. e allelic
and genotypic frequencies of the non-synonymous SNPs
common to the five Nigerian species were tested by chi-
square test (χ2) or Fisher’s exact test using SPSS version
21.0 (IBM Corp., Armonk, NY).
Assessment of the eects of the non-synonymous SNPs
e effects of the three (3) nonsynonymous SNPs of
PRNP gene common to the five Nigerian livestock spe-
cies were evaluated using PolyPhen- 2 (https://genetics.
bwh.harvard.edu/pph2/).
Abbreviations
PRNP Prion protein
TSEs Transmissible spongiform encephalopathies
PrPSc Protease-resistant isoform
PrPC Cellular prion proteins
SPRN Shadow of the prion protein gene
PRNT The prion-related gene
CJD Creutzfeldt–Jakob disease
SNPs Single Nucleotide Polymorphism
WAD West African Dwarf
ORF Open reading frame
Supplementary Information
The online version contains supplementary material available at https://doi.
org/10.1186/s12864-024-10070-2.
Supplementary Material 1
Supplementary Material 2
Supplementary Material 3
Supplementary Material 4
Supplementary Material 5
Acknowledgements
We recognize all who assisted in the success of this study.
Author contributions
A.C.A., S.F.B., A.M.A., and R.A.M.A led the project, designed, and conceived the
study. A.C.A., and S.F.B. performed data analysis, interpreted results, prepared,
and developed the manuscript. A.C.A., and S.F.B carried out experiments. A.E.S.,
Fig. 2 Map of Nigeria showing the sampling locations
Content courtesy of Springer Nature, terms of use apply. Rights reserved.
Page 7 of 8
Adeola et al. BMC Genomics (2024) 25:177
A.M.A., N.A., R.A.M.A., A.B.O., A.I.M., O.J.S., S.C.O., G.F.M., J.I., P.M.D., S.K., and M.H.Y.
revised the manuscript. A.C.A., R.A.M.A., A.I.M., O.J.S., S.C.O., G.F.M., J.I., A.M.A.,
N.A., A.E.S., P.M.D., A.B.O., S.K., and M.H.Y. performed sampling. All authors
contributed and approved the nal manuscript.
Funding
This work was supported by the Sino-Africa Joint Research Center, Chinese
Academy of Sciences (SAJC202103), and the Animal Branch of the Germplasm
Bank of Wild Species, Chinese Academy of Sciences (the Large Research
Infrastructure Funding). In addition, this work has been successful through
the Chinese Academy of Sciences President’s International Fellowship
Initiative (CAS-PIFI) who provided grant support to Adeola Charles Adeniyi
(2021FYB0006).
Data availability
The nucleotide sequences are available on NCBI with accession numbers:
MZ463488 - MZ463499 for horse, MZ463325 - MZ463355 for dog, and
OK041226 - OK041290 for camel.
Declarations
Ethics approval and consent to participate
All experimental procedures in this present study were performed in
accordance with Research Guidelines for the Institutional Review Board of
Kunming Institute of Zoology, Chinese Academy of Sciences (SMKX-20160524-
119) and current study is approved by the Institutional Review Board of
Kunming Institute of Zoology, Chinese Academy of Sciences (SMKX-20160524-
119). We have complied with ARRIVE at submission.
Consent for publication
Not Applicable.
Competing interests
The authors declare no competing interests.
Author details
1State Key Laboratory of Genetic Resources and Evolution & Yunnan
Laboratory of Molecular Biology of Domestic Animals, Kunming Institute
of Zoology, Chinese Academy of Sciences, Kunming, China
2Sino-Africa Joint Research Center, Chinese Academy of Sciences,
Kunming, China
3Department of Animal Genetics, Breeding and Reproduction, College of
Animal Science, South China Agricultural University, 510642 Guangzhou,
China
4Department of Veterinary Physiology and Biochemistry, Faculty of
Veterinary Medicine, Bayero University, Kano, Nigeria
5Department of Veterinary Medicine, Faculty of Veterinary Medicine,
University of Ibadan, Ibadan, Nigeria
6Department of Biochemistry, Faculty of Basic Medical Sciences, College
of Health Sciences, Bayero University, Kano, Nigeria
7Ministry of Agriculture and Rural Development, Secretariat, Ibadan,
Nigeria
8Department of Virology, College of Medicine, University of Ibadan,
Ibadan, Nigeria
9Taraba State Ministry of Agriculture and Natural Resources, Jalingo,
Nigeria
10Division of Veterinary Oce, Serti, Nigeria
11Department of Veterinary Surgery and Theriogenology, College of
Veterinary Medicine, University of Agriculture Makurdi, Makurdi, Nigeria
12Department of Animal Science, Faculty of Agriculture, National
University of Lesotho, Maseru, South Africa
13Department of Animal Science, Faculty of Agriculture, University of
Ibadan, Ibadan, Nigeria
14Livestock and Wildlife Laboratory, Institut des Régions Arides, Université
de Gabes, Route El Djorf, Km 22.5, 4119 Medenine, Tunisia
Received: 12 June 2023 / Accepted: 31 January 2024
References
1. Kim Y-C, Won S-Y, Jeong B-H. Altered expression of glymphatic system-related
proteins in prion diseases: implications for the role of the glymphatic system
in prion diseases. Cell Mol Immunol. 2021;18:2281–3.
2. Wan J, Bai X, Liu W, Xu J, Xu M, Gao H. Polymorphism of prion protein gene in
Arctic fox (Vulpes lagopus). Mol Biol Rep. 2009;36:1299–303.
3. Kim YC, Kim SK, Jeong BH. Scrapie susceptibility-associated indel polymor-
phism of shadow of prion protein gene (SPRN) in Korean native black goats.
Sci Rep. 2019;9.
4. Prusiner SB. Molecular biology of prion diseases. Science (80-). 1991;252.
5. Kim YC, Jeong BH. The rst report of prion-related protein gene (PRNT)
polymorphisms in goat. Acta Vet Hung. 2017;65.
6. Jeong MJ, Jeong BH. NO polymorphisms in the coding region of the
prion-like protein gene in Thoroughbred racehorses. Acta Vet Hung.
2019;67:174–82.
7. Myers R, Cembran A, Fernandez-Funez P. Insight from animals resistant to
Prion diseases: deciphering the genotype– morphotype– phenotype code
for the prion protein. Front Cell Neurosci. 2020;14:1–15.
8. Wulf MA, Senatore A, Aguzzi A. The biological function of the cellular prion
protein: an update. BMC Biol. 2017;15:1–13.
9. Salvesen Ø, Espenes A, Reiten MR, Vuong TT, Malachin G, Tran L, et al. Goats
naturally devoid of PrPC are resistant to scrapie. Vet Res. 2020;51:1–14.
10. Douet JY, Huor A, Cassard H, Lugan S, Aron N, Arnold M, et al. Wide distribu-
tion of prion infectivity in the peripheral tissues of vCJD and sCJD patients.
Acta Neuropathol. 2021;141:383–97.
11. Tranulis MA, Gavier-Widén D, Våge J, Nöremark M, Korpenfelt SL, Hautaniemi
M, et al. Chronic wasting disease in Europe: new strains on the horizon. Acta
Vet Scand. 2021;63:1–15.
12. Pérez DR, Damberger FF, Wüthrich K. Horse prion protein NMR structure and
comparisons with related variants of the mouse prion protein. J Mol Biol.
2010;400:121–8.
13. Imran M, Mahmood S. An overview of human prion diseases. Virol J. 2011;8.
14. Kovács GG, Puopolo M, Ladogana A, Pocchiari M, Budka H, van Duijn C et al.
Genetic prion disease: the EUROCJD experience. Hum Genet. 2005;118.
15. Lloyd SE, Mead S, Collinge J. Genetics of prion diseases. Curr Opin Genet Dev.
2013;23.
16. Won SY, Kim YC, Jeong BH. First report of the potential bovine spongiform
encephalopathy (Bse)-related somatic mutation e211k of the prion protein
gene (prnp) in cattle. Int J Mol Sci. 2020;21.
17. Zhang J. The nature of the infectious agents: Prp models of resistant species
to prion diseases (dog, rabbit and horses). In: Prions and Prion Diseases: New
Developments. 2012.
18. Zhang J. The structural stability of wild-type horse prion protein. J Biomol
Struct Dyn. 2011;29.
19. Detwiler LA, Baylis M. The epidemiology of scrapie. OIE Revue Scientique et
Technique. 2003;22.
20. Acín C, Bolea R, Monzón M, Monleón E, Moreno B, Filali H, et al. Classical and
atypical scrapie in sheep and goats: review on the etiology, genetic factors,
pathogenesis, diagnosis, and control measures of both diseases. Animals.
2021;11:1–20.
21. Baylis M, Goldmann W. The Genetics of Scrapie in Sheep and Goats. Curr Mol
Med. 2005;4.
22. Agrimi U, Conte M, Morelli L, Di Bari MA, Di Guardo G, Ligios C et al. Animal
transmissible spongiform encephalopathies and genetics. Vet Res Commun.
2003;27 SUPPL. 1.
23. Lee J, Kim SY, Hwang K J, Ju YR, Woo HJ. Prion diseases as Transmissible Zoo-
notic diseases. Osong Public Health Res Perspect. 2013;4.
24. Gelasakis AI, Boukouvala E, Babetsa M, Katharopoulos E, Palaska V, Papak-
ostaki D et al. Polymorphisms of codons 110, 146, 211 and 222 at the goat
prnp locus and their association with scrapie in Greece. Animals. 2021;11.
25. Kim YC, Won SY, Jeong BH. Absence of single nucleotide polymorphisms
(SNPs) in the open reading frame (ORF) of the prion protein gene (PRNP) in a
large sampling of various chicken breeds. BMC Genomics. 2019;20:1–7.
26. Dudas S, Czub S, Atypical BSE. Current knowledge and knowledge gaps.
Food Saf. 2017;5.
27. Beck JA, Campbell TA, Adamson G, Poulter M, Uphill JB, Molou E et al. Associa-
tion of a null allele of SPRN with variant Creutzfeldt-Jakob disease. J Med
Genet. 2008;45.
28. Fragkiadaki EG, Vaccari G, Ekateriniadou LV, Agrimi U, Giadinis ND, Chiappini
B, et al. PRNP genetic variability and molecular typing of natural goat scrapie
isolates in a high number of infected ocks. Vet Res. 2011;42:2–7.
Content courtesy of Springer Nature, terms of use apply. Rights reserved.
Page 8 of 8
Adeola et al. BMC Genomics (2024) 25:177
29. Pitarch JL, Raksa HC, Arnal MC, Revilla M, Martínez D, De Fernández D et al.
Low sequence diversity of the prion protein gene (PRNP) in wild deer and
goat species from Spain. Vet Res. 2018;49.
30. Adeola AC, Bello SF, Abdussamad AM, Mark AI, Sanke OJ, Onoja AB, et al.
Scrapie-associated polymorphisms of the prion protein gene (PRNP) in
Nigerian native goats. Gene. 2022;855:147121.
31. Vaccari G, Di Bari MA, Morelli L, Nonno R, Chiappini B, Antonucci G et al. Iden-
tication of an allelic variant of the goat PrP gene associated with resistance
to scrapie. J Gen Virol. 2006;87.
32. Clouscard C, Beaudry P, Elsen JM, Milan ~ D, Dussaucy ~ M, Bounneau C et al.
Dierent allelic eects of the codons 136 and 171 of the prion protein gene
in sheep with natural scrapie. 1995.
33. Baylis M, Goldmann W, Houston F, Cairns D, Chong A, Ross A et al. Scrapie
epidemic in a fully PrP-genotyped sheep ock. J Gen Virol. 2002;83.
34. Adeola AC, Bello SF, Abdussamad AM, Mark AI, Sanke OJ, Onoja AB, et
al. Polymorphism of prion protein gene (PRNP) in Nigerian sheep. Prion.
2023;17:44–54.
35. Mohammed I, Homann I. Management of draught camels (Camelus drom-
edarius) in crop-livestock production systems in Northwest Nigeria. Livest Res
Rural Dev. 2006;18.
36. Eke C, Omotowo B, Ukoha M, Ibe B. Human rabies: still a neglected prevent-
able disease in Nigeria. Niger J Clin Pract. 2015;18:268–72.
37. Ehizibolo DO, Gusi AM, Ehizibolo PO, Mbuk EU, Ocholi RA. Serologic
prevalence of brucellosis in horse stables in two northern states of Nigeria. J
Equine Sci. 2011;22.
38. Lombin LH. Report on the internet. 2007. http://www.africanagricultureblog.
com/2007/12/nigeria-has-16-million-cattle.html 2007.
39. Yunusa AJ, Salako AE, Oladejo OA. Morphometric characterization of
Nigerian indigenous sheep using multifactorial discriminant analysis. 2013;5
October:661–5.
40. Serranito B, Taurisson-Mouret D, Harkat S, Laoun A, Ouchene-Kheli NA,
Pompanon F, et al. Search for selection signatures related to Trypanosomosis
Tolerance in African goats. Front Genet. 2021;12:1–15.
41. Wheto M, Ilori BM, Sanda AJ, Adeleke MA, Durosaro SO, Adenaike AS et al.
Morphological characterization and evaluation of heat tolerance traits in
Nigerian goat breeds. Niger J Anim Prod. 2021;42.
42. Yakubu A, Salako AE, Imumorin IG. Comparative multivariate analysis of bio-
metric traits of west African dwarf and Red Sokoto goats. Trop Anim Health
Prod. 2011;43.
43. Murital I, Afolayan O, Bemji MN, Dadi O, Landi V, Martínez A et al. Genetic
diversity and population structure of Nigerian indigenous goat using DNA
microsatellite markers. Arch Zootec. 2015;64.
44. Goldmann W, Hunter N, Smith G, Foster J, Hope J. PrP genotype and agent
eects in scrapie: change in allelic interaction with dierent isolates of agent
in sheep, a natural host of scrapie. J Gen Virol. 1994;75.
45. Greenlee JJ, Review. Update on classical and atypical Scrapie in Sheep and
Goats. Vet Pathol. 2019;56:6–16.
46. Cassmann ED, Greenlee JJ. Pathogenesis, detection, and control of scrapie in
sheep. Am J Vet Res. 2020;81:600–14.
47. Yang S, Thackray AM, Hopkins L, Monie TP, Burke DF, Bujdoso R. Polymor-
phisms at amino acid residues 141 and 154 inuence conformational varia-
tion in ovine PrP. Biomed Res Int. 2014;2014.
48. Andrade CP, Neto JDB, Driemeier D. Identication of single nucleotide poly-
morphisms in the prion protein gene in Santa Ines and Dorset sheep. Pesqui
Vet Bras. 2018;38:624–8.
49. Öner Y, Yilmaz O, Eriş C, Ata N, Ünal C, Koncagül S. Genetic diversity and
population structure of Turkish native cattle breeds. South Afr J Anim Sci.
2019. https://doi.org/10.4314/sajas.v49i4.4.
50. Fantazi K, Migliore S, Kdidi S, Racinaro L, Teel H, Boukhari R, et al. Analysis of
dierences in prion protein gene (PRNP) polymorphisms between Algerian
and Southern Italy’s goats. Ital J Anim Sci. 2018;17:578–85.
51. Kim SK, Kim YC, Won SY, Jeong BH. Potential scrapie-associated polymor-
phisms of the prion protein gene (PRNP) in Korean native black goats. Sci
Rep. 2019;9:1–10.
52. Billinis C, Psychas V, Leontides L, Spyrou V, Argyroudis S, Vlemmas I et al.
Prion protein gene polymorphisms in healthy and scrapie-aected sheep in
Greece. J Gen Virol. 2004;85.
53. Tahmoorespur M, Jelokhani Niaraki S. Analysis of sequence variations of prion
protein gene in dromedary camels in Iran. J Appl Anim Res. 2014;42:238–43.
54. Abdel-Aziem SH, Abd El-Kader HAM, Alam SS, Abd El-Moneim OM, Othman
OE. Nucleotide structure of prion protein gene in Egyptian camels. J Appl
Anim Res. 2019;47:123–8.
55. Zoubeyda K, Imane M, Youcef C, Baaissa B, Suheil GSB, Michela C et al. Vari-
ability of the prion protein gene (PRNP) in Algerian dromedary populations.
Anim Gene. 2020;17–8 February.
56. Vidal E, Fernández-Borges N, Eraña H, Parra B, Pintado B, Sánchez-Martín MA,
et al. Dogs are resistant to prion infection, due to the presence of aspartic or
glutamic acid at position 163 of their prion protein. FASEB J. 2020;34:3969–82.
57. Kim YC, Kim HH, Kim AD, Jeong BH. Novel insertion/deletion polymorphisms
and genetic features of the shadow of prion protein gene (SPRN) in dogs, a
prion-resistant animal. Front Vet Sci. 2022;9.
58. Kim YC, Jeong BH. The rst report of polymorphisms and genetic characteris-
tics of the prion protein gene (PRNP) in horses. Prion. 2018;12.
59. Sambrook J, Russell DW. Molecular cloning: a laboratory manual (3-volume
set). Molecular cloning: a laboratory manual. 2001.
60. Kumar S, Tamura K, Nei M. MEGA3: Integrated software for Molecular Evolu-
tionary Genetics Analysis and sequence alignment. Brief Bioinform. 2004;5.
61. Rozas J, Ferrer-Mata A, Sanchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-
Onsins SE, et al. DnaSP 6: DNA sequence polymorphism analysis of large data
sets. Mol Biol Evol. 2017. https://doi.org/10.1093/molbev/msx248.
62. Saitou N, Nei M. The neighbor-joining method: a new method for recon-
structing phylogenetic trees. Mol Biol Evol. 1987;4.
63. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood
approach. J Mol Evol. 1981;17.
Publisher’s Note
Springer Nature remains neutral with regard to jurisdictional claims in
published maps and institutional aliations.
Content courtesy of Springer Nature, terms of use apply. Rights reserved.
1.
2.
3.
4.
5.
6.
Terms and Conditions
Springer Nature journal content, brought to you courtesy of Springer Nature Customer Service Center GmbH (“Springer Nature”).
Springer Nature supports a reasonable amount of sharing of research papers by authors, subscribers and authorised users (“Users”), for small-
scale personal, non-commercial use provided that all copyright, trade and service marks and other proprietary notices are maintained. By
accessing, sharing, receiving or otherwise using the Springer Nature journal content you agree to these terms of use (“Terms”). For these
purposes, Springer Nature considers academic use (by researchers and students) to be non-commercial.
These Terms are supplementary and will apply in addition to any applicable website terms and conditions, a relevant site licence or a personal
subscription. These Terms will prevail over any conflict or ambiguity with regards to the relevant terms, a site licence or a personal subscription
(to the extent of the conflict or ambiguity only). For Creative Commons-licensed articles, the terms of the Creative Commons license used will
apply.
We collect and use personal data to provide access to the Springer Nature journal content. We may also use these personal data internally within
ResearchGate and Springer Nature and as agreed share it, in an anonymised way, for purposes of tracking, analysis and reporting. We will not
otherwise disclose your personal data outside the ResearchGate or the Springer Nature group of companies unless we have your permission as
detailed in the Privacy Policy.
While Users may use the Springer Nature journal content for small scale, personal non-commercial use, it is important to note that Users may
not:
use such content for the purpose of providing other users with access on a regular or large scale basis or as a means to circumvent access
control;
use such content where to do so would be considered a criminal or statutory offence in any jurisdiction, or gives rise to civil liability, or is
otherwise unlawful;
falsely or misleadingly imply or suggest endorsement, approval , sponsorship, or association unless explicitly agreed to by Springer Nature in
writing;
use bots or other automated methods to access the content or redirect messages
override any security feature or exclusionary protocol; or
share the content in order to create substitute for Springer Nature products or services or a systematic database of Springer Nature journal
content.
In line with the restriction against commercial use, Springer Nature does not permit the creation of a product or service that creates revenue,
royalties, rent or income from our content or its inclusion as part of a paid for service or for other commercial gain. Springer Nature journal
content cannot be used for inter-library loans and librarians may not upload Springer Nature journal content on a large scale into their, or any
other, institutional repository.
These terms of use are reviewed regularly and may be amended at any time. Springer Nature is not obligated to publish any information or
content on this website and may remove it or features or functionality at our sole discretion, at any time with or without notice. Springer Nature
may revoke this licence to you at any time and remove access to any copies of the Springer Nature journal content which have been saved.
To the fullest extent permitted by law, Springer Nature makes no warranties, representations or guarantees to Users, either express or implied
with respect to the Springer nature journal content and all parties disclaim and waive any implied warranties or warranties imposed by law,
including merchantability or fitness for any particular purpose.
Please note that these rights do not automatically extend to content, data or other material published by Springer Nature that may be licensed
from third parties.
If you would like to use or distribute our Springer Nature journal content to a wider audience or on a regular basis or in any other manner not
expressly permitted by these Terms, please contact Springer Nature at
onlineservice@springernature.com
... All 50 individuals representing eight breeds of Ethiopian C. dromedarius were monomorphic for the PRNP gene and were 100% identical to the nucleotide sequences reported for the CPD-positive individuals in Algeria (Babelhadj et al., 2018). Most studies (Abdel-Aziem et al., 2019;Adeola et al., 2024;Babelhadj et al., 2018;Kaluz, Kaluzova & Flint, 1997;Tahmoorespur & Jelokhani Niaraki, 2014;Tahmoorespur & Jelokhani Niaraki, 2014;Xu et al., 2012;Zoubeyda et al., 2020) and goats and free-ranging and captive cervids, among others, there are known genotypes or single codons that infer resistance (R171 in sheep, V129 in humans; Goldmann, 2008;Kosami et al., 2022;Riek et al., 1998;Satoh & Nakamura, 2022) or susceptibility (G96 and S225 in deer) to prion diseases (Goldmann, 2008;Kobayashi et al., 2015;Orge et al., 2021, Table 4). For example, in domestic sheep, there are five categories that range from high risk for prion infection to complete resistance pertaining to three codons (amino acids 136, 154, and 171) and their associated amino acid substitutions (Goldmann, 2008). ...
Article
Full-text available
Transmissible spongiform encephalopathies (TSEs) are a fatal neurogenerative disease that include Creutzfeldt–Jakob disease in humans, scrapie in sheep and goats, bovine spongiform encephalopathy (BSE), and several others as well as the recently described camel prion disease (CPD). CPD originally was documented in 3.1% of camels examined during an antemortem slaughterhouse inspection in the Ouargla region of Algeria. Of three individuals confirmed for CPD, two were sequenced for the exon 3 of the prion protein gene (PRNP) and were identical to sequences previously reported for Camelus dromedarius . Given that other TSEs, such as BSE, are known to be capable of cross–species transmission and that there is household consumption of meat and milk from Camelus , regulations to ensure camel and human health should be a One Health priority in exporting countries. Although the interspecies transmissibility of CPD currently is unknown, genotypic characterization of Camelus PRNP may be used for predictability of predisposition and potential susceptibility to CPD. Herein, eight breeds of dromedary camels from a previous genetic (mitochondrial DNA and microsatellites) and morphological study were genotyped for PRNP and compared to genotypes from CPD–positive Algerian camels. Sequence data from PRNP indicated that Ethiopian camels possessed 100% sequence identity to CPD–positive camels from Algeria. In addition, the camel PRNP genotype is unique compared to other members of the Orders Cetartiodactyla and Perissodactyla and provides an in–depth phylogenetic analysis of families within Cetartiodactyla and Perissodactyla that was used to infer the evolutionary history of the PRNP gene.
Article
Full-text available
Polymorphism of the prion protein gene (PRNP) gene determines an animal’s susceptibility to scrapie. Three polymorphisms at codons 136, 154, and 171 have been linked to classical scrapie susceptibility, although many variants of PRNP have been reported. However, no study has investigated scrapie susceptibility in Nigerian sheep from the drier agro-climate zones. In this study, we aimed to identify PRNP polymorphism in nucleotide sequences of 126 Nigerian sheep by comparing them with public available studies on scrapie-affected sheep. Further, we deployed Polyphen-2, PROVEAN, and AMYCO analyses to determine the structure changes produced by the non-synonymous SNPs. Nineteen (19) SNPs were found in Nigerian sheep with 14 being non-synonymous. Interestingly, one novel SNP (T718C) was identified. There was a significant difference (P < 0.05) in the allele frequencies of PRNP codon 154 between sheep in Italy and Nigeria. Based on the prediction by Polyphen-2, R154H was probably damaging while H171Q was benign. Contrarily, all SNPs were neutral via PROVEAN analysis while two haplotypes (HYKK and HDKK) had similar amyloid propensity of PRNP with resistance haplotype in Nigerian sheep. Our study provides valuable information that could be possibly adopted in programs targeted at breeding for scrapie resistance in sheep from tropical regions.
Article
Full-text available
Prion diseases are fatal infectious neurodegenerative disorders that are induced by misfolded prion protein (PrPSc). Previous studies have reported that the shadow of prion protein (Sho) encoded by the shadow of prion protein gene (SPRN) plays a critical role in stimulating the conversion process of normal PrP (PrPC) into PrPSc, and genetic polymorphisms of the SPRN gene are significantly related to susceptibility to prion diseases. Recent studies have reported that dogs show prion resistance, and there have been several attempts to identify resistance factors to prion diseases in dogs. However, there has been no study of the canine SPRN gene thus far. We investigated genetic polymorphisms of the canine SPRN gene in 201 dogs using amplicon sequencing and compared the number of SPRN polymorphisms among prion-related species. In addition, we performed multiple sequence alignments of the amino acid sequences of Sho among prion-related species by ClustalW and analyzed the 3D structure of Sho using AlphaFold. Furthermore, we assessed the protein–protein interaction of canine PrP with canine Sho carrying wild-type and mutant alleles using HawkDock. We found four novel insertion/deletion polymorphisms of the SPRN gene in 201 dogs and identified a significant difference in the number of SPRN polymorphisms between prion-susceptible and prion-resistant animals. In addition, Sho has two α-helixes linked with the coil. Furthermore, we found different binding complexes and binding free energies between canine Sho and PrP according to SPRN polymorphisms. To the best of our knowledge, this is the first report of canine SPRN polymorphisms.
Article
Full-text available
Prion diseases are fatal neurodegenerative disorders with known natural occurrence in humans and a few other mammalian species. The diseases are experimentally transmissible, and the agent is derived from the host-encoded cellular prion protein (PrP C ), which is misfolded into a pathogenic conformer, designated PrP Sc (scrapie). Aggregates of PrP Sc molecules, constitute proteinaceous infectious particles, known as prions. Classical scrapie in sheep and goats and chronic wasting disease (CWD) in cervids are known to be infectious under natural conditions. In CWD, infected animals can shed prions via bodily excretions, allowing direct host-to-host transmission or indirectly via prion-contaminated environments. The robustness of prions means that transmission via the latter route can be highly successful and has meant that limiting the spread of CWD has proven difficult. In 2016, CWD was diagnosed for the first time in Europe, in reindeer ( Rangifer tarandus ) and European moose ( Alces alces ). Both were diagnosed in Norway, and, subsequently, more cases were detected in a semi-isolated wild reindeer population in the Nordfjella area, in which the first case was identified. This population was culled, and all reindeer (approximately 2400) were tested for CWD; 18 positive animals, in addition to the first diagnosed case, were found. After two years and around 25,900 negative tests from reindeer (about 6500 from wild and 19,400 from semi-domesticated) in Norway, a new case was diagnosed in a wild reindeer buck on Hardangervidda, south of the Nordfjella area, in 2020. Further cases of CWD were also identified in moose, with a total of eight in Norway, four in Sweden, and two cases in Finland. The mean age of these cases is 14.7 years, and the pathological features are different from North American CWD and from the Norwegian reindeer cases, resembling atypical prion diseases such as Nor98/atypical scrapie and H- and L-forms of BSE. In this review, these moose cases are referred to as atypical CWD. In addition, two cases were diagnosed in red deer ( Cervus elaphus ) in Norway. The emergence of CWD in Europe is a threat to European cervid populations, and, potentially, a food-safety challenge, calling for a swift, evidence-based response. Here, we review data on surveillance, epidemiology, and disease characteristics, including prion strain features of the newly identified European CWD agents.
Article
Full-text available
Scrapie is considered an endemic disease in both sheep and goats in Greece. However, contrary to sheep, in goats more than one prion protein (PrP) polymorphism has been recognized as a candidate for resistance breeding against the disease. For an impression which candidates are circulating, (i) brain samples (n = 525) from scrapie-affected (n = 282) and non-affected (n = 243) animals within the national surveillance program, and (ii) individual blood samples (n = 1708) from affected (n = 241) and non-affected (n = 1467) herds, in a large part of mainland Greece and its islands, were collected and assayed. A dedicated Taqman method was used to test for amino acid polymorphisms 110T/P, 146N/S/D, 211R/Q, and 222Q/K. Highly prevalent genotypes were 110TT, 146NN, 211RR, and 222QQ. The frequencies of polymorphisms in blood and negative brain samples for codons 110P, 211Q, and 222K were 4.0%, 3.0%, and 1.9%, respectively, while 146D (0.7%) was present only on Karpathos island. Codon 110P was exclusively found in scrapie-negative brains, and homozygous 110P/P in two scrapie-negative goats. It is concluded that breeding programs in Karpathos could focus on codon 146D, while in other regions carriers of the 110P and 222K allele should be sought. Case-control and challenge studies are now necessary to elucidate the most efficient breeding strategies.
Article
Full-text available
Livestock is heavily affected by trypanosomosis in Africa. Through strong selective pressure, several African indigenous breeds of cattle and small ruminants have acquired varying degrees of tolerance against this disease. In this study, we combined LFMM and PCAdapt for analyzing two datasets of goats from West-Central Africa and East Africa, respectively, both comprising breeds with different assumed levels of trypanotolerance. The objectives were (i) to identify molecular signatures of selection related to trypanotolerance; and (ii) to guide an optimal sampling for subsequent studies. From 33 identified signatures, 18 had been detected previously in the literature as being mainly associated with climatic adaptations. The most plausible signatures of trypanotolerance indicate the genes DIS3L2, COPS7B, PD5A, UBE2K, and UBR1. The last gene is of particular interest since previous literature has already identified E3-ubiquitin ligases as playing a decisive role in the immune response. For following-up on these findings, the West-Central African area appears particularly relevant because of (i) a clear parasitic load gradient related to a humidity gradient, and (ii) still restricted admixture levels between goat breeds. This study illustrates the importance of protecting local breeds, which have retained unique allelic combinations conferring their remarkable adaptations.
Article
Full-text available
There are three main breeds of goat in Nigeria: The West African Dwarf (WAD), the Red Sokoto and the Sahel. Goats are renowned for their hardiness and can survive in most environments. The goats sampling was carried out from farms and markets across different states in Nigeria, according to the geographical distribution of the breeds published by Blench (1999). This experiment was carried out to analyse morphological variability among Nigerian goats. A total of 318 goats spread across the three Nigerian breeds were used in the following populations (57 Sahel, 187 Red Sokoto and 137 West African Dwarf). Data were collected on body weight, linear body measurements and heat tolerance traits and were subjected to analysis of variance using the fixed effects of breed, sex and location. Results showed that breed, sex and location significantly (P<0.05) affected all the linear body measurements and heat tolerance traits. The Sahel breed had the highest values in most of the measured traits compared to the West African Dwarf and the Red Sokoto breeds of goat. It was observed that goats from the northern part of Nigeria were heavier than their southern counterparts, and this can be likened to their genetic makeup and the extent of its interaction with the environment. The results of the study confirmed the population structure of Nigerian goat breeds and showed that they possess enough diversity to enhance genetic improvement for higher survival and productivity.
Article
Scrapie is a fatal prion protein disease stiffly associated with single nucleotide polymorphism (SNPs) of the prion protein gene (PRNP). The prevalence of this deadly disease has been reported in small ruminants, including goats. The Nigerian goats are hardy, trypano-tolerant, and contribute to the protein intake of the increasing population. Although scrapie has been reported in Nigerian goats, there is no study on the polymorphism of the PRNP gene. Herein, we evaluated the genetic and allele distributions of PRNP polymorphism in 132 Nigerian goats and compared them with publicly available studies on scrapie-affected goats. We utilized Polyphen-2, PROVEAN and AMYCO programs to examine structural variations produced by the non-synonymous SNPs. Our study revealed 29 SNPs in Nigerian goats, of which 14 were non-synonymous, and 23 were novel. There were significant differences (P <0.001) in the allele frequencies of PRNP codons 139, 146, 154 and 193 in Nigerian goats compared with scrapie-affected goats, except for Northern Italian goats at codon 154. Based on the prediction by Polyphen-2, R139S and N146S were 'benign', R154H was 'probably damaging', and T193I was 'possibly damaging'. In contrast, PROVEAN predicted 'neutral' for all non-synonymous SNPs, while AMYCO showed a similar amyloid propensity of PRNP for resistant haplotype and two haplotypes of Nigerian goats. Our study is the first to investigate the polymorphism of scrapie-related genes in Nigerian goats.