Thesis

Unravelling the complex reproductive tactics of male humpback whales: an integrative analysis of paternity, age, testosterone, and genetic diversity

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Abstract

How the underlying forces of sexual selection impact reproductive tactics including elaborate acoustic displays in cetaceans remains poorly understood. Here, I combined 26 years (1995-2020) of photo-identification, behavioural, (epi)genetic, and endocrine data from an endangered population of humpback whales (New Caledonia), to explore male reproductive success, age, physiology, and population dynamics over almost a third of the lifespan of a humpback whale. First, I conducted a paternity analysis on 177 known mother-offspring pairs and confirmed previous findings of low variation in reproductive success in male humpback whales. Second, epigenetic age estimates of 485 males revealed a left-skewed population age structure in the first half of the study period that became more balanced in the second half. Further, older males (> 23 years) more often engaged in certain reproductive tactics (singing and escorting) and were more successful in siring offspring once the population age structure stabilised, suggesting reproductive tactics and reproductive success in male humpback whales may be age-dependent. Third, using enzyme immunoassays on 457 blubber samples, I observed a seasonal decline in male testosterone in the population over the breeding season. Testosterone levels appeared highest during puberty, then decreased and levelled off at the onset of maturity, yet were highly variable at any point during the breeding season and across males of all ages. Lastly, I investigated the influence of genetic diversity at the major histocompatibility complex (MHC) class I and class IIa (DQB and DRB-a) on patterns of male reproductive success in humpback whales. Mating pairs shared fewer alleles than expected under random mating at MHC class I and IIa, thus, providing evidence of an MHC-mediated female mate choice in humpback whales. This thesis provides novel, critical insights into the evolutionary consequences of commercial whaling on the demography, patterns of reproduction and sexual selection of exploited populations of baleen whales.

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Introduction DNA methylation data facilitate the development of accurate molecular estimators of chronological age, or ‘epigenetic clocks.’ We present a robust epigenetic clock for the beluga whale, Delphinapterus leucas, developed for an endangered population in Cook Inlet, Alaska, USA. Methods and Results We used a custom methylation array to measure methylation levels at 37,491 cytosine‐guanine sites (CpGs) from skin samples of dead whales (n = 67) whose chronological ages were estimated based on tooth growth layer groups. Using these calibration data, a penalized regression model selected 23 CpGs, providing an R² = 0.92 for the training data; and an R² = 0.74 and median absolute age error = 2.9 years for the leave one out cross‐validation. We applied the epigenetic clock to an independent data set of 38 skin samples collected with a biopsy dart from living whales between 2016 and 2018. Age estimates ranged from 11 to 27 years. We also report sex correlations in CpG data and describe an approach of identifying the sex of an animal using DNA methylation. Discussion The epigenetic estimators of age and sex presented here have broad applications for conservation and management of Cook Inlet beluga whales and potentially other cetaceans.
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Since the first studies on bowhead whale singing behaviour, song variations have been consistently reported. However, there has been little discussion regarding variability in bowhead whale singing display and its ecological significance. Unlike the better studied humpback whales, bowhead whales do not appear to share songs at population level, but several studies have reported song sharing within clusters of animals. Over the winter season 2013–2014, in an unstudied wintering ground off Northeast Greenland, 13 song groups sharing similar hierarchical structure and units were identified. Unit types were assessed through multidimensional maps, showing well separated clusters corresponding to manually labelled units, and revealing the presence of unit subtypes. Units presented contrasting levels of variability over their acoustic parameters, suggesting that bowhead whales keep consistency in some units while using a continuum in values of frequency, duration and modulation parameters for other unit types. Those findings emphasise the need to account for variability in song analysis to better understand the behavioural ecology of this endangered species. Additionally, shifting from song toward units or phrase-based analysis, as it has been suggested for humpback whales, offers the opportunity to identify and track similarities in songs over temporal and geographical scales relevant to population monitoring.
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Chapter
The acoustic behavior of minke whaleMinke whale populations worldwide has been a mystery for the better part of the twentieth century. Several likely biological sound sources such as the ‘boing’‘boing’ recorded in the North Pacific, or the ‘bio-duck’‘bioduck’ with its ubiquitous distribution in the Southern Ocean, had been described by seafarers since the middle of the twentieth century. However, the origin of these sounds could only be revealed once technological advances allowed scientists to simultaneously acoustically and visually track the elusiveElusive species producing them. The current data show that, like other baleen whales, most minke whaleMinke whale populations produce long song sequences presumably in a reproductive contextReproductive context. Over the past two decades, by extending our listening efforts into remote habitats, we have learned much about minke whalesMinke whale and can assume that many more mysteries are waiting to be unlocked.
Chapter
Right whales have a long history of interactions with humans, being arguably the first commercially hunted species of whale. There are currently three recognized species of right whales including the North Pacific right whale (Eubalaena japonica), the North Atlantic right whale (Eubalaena glacialis), and the southern right whale (Eubalaena australis). The conservation status of these three species varies. Both of the northern hemisphere species are endangered and have only a few hundred individuals remaining, while the southern hemisphere species have multiple growing breeding populations that include thousands of individuals. Studies of right whale behavioral ecology and acoustic communication started in the 1960s and 1970s with studies off Massachusetts for North Atlantic right whales, and off Argentina for southern right whales. Behavioral studies of the less accessible North Pacific right whales have lagged behind, with most information on their behavior being published in the past 20 years. All right whale species share similarities in their acoustic repertoires, with a stereotyped contact call, the upcall and a loud broadband impulsive sound, the gunshot, being described for all species. Beyond these stereotyped sound types, right whales all share a graded repertoire of signals that range from pulsive to tonal in structure. Sound type usage varies by the behavioral context of the communication, and sound types appear to serve similar behavioral roles in all three species. Studies across species suggest that there are differences in sound production that reflect the sex and age class of the signaling individual. Additional studies have demonstrated behavioral responses of right whales to exposure from noise in their environments. Emerging areas for future research include the expansion of the use of passive acoustic monitoring to aid in the conservation of these whales.KeywordsRight whale Eubalaena Baleen whaleBehaviorEndangered speciesAcousticsPassive acoustic monitoring
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Baleen whalesBaleen whales are specialized to find and exploit preyPrey that form dense patches seasonally within broad ocean areas. Most populations have an annual reproductive cycleAnnual reproductive cycle that separates their breeding seasonBreeding season from their feeding seasonFeeding season, often with long-distance migrationsMigrationsbetween feedingFeedingand breedingBreeding areas. The longest bond we know of for most baleen whale species is the mother-calf bondMother-calf bond. CalvesCalve suckle for five to seven months in most species and wean by the next feeding seasonFeeding season. The species whose social behavior has been most studied is the humpback whaleHumpback whale, enabled by their distribution, which often is near shore, and their individually distinctive natural markings. Some humpback whalesHumpback whalefeedingFeeding on mobile prey form stable groupsStable group where each individual learnsLearn specific roles to perform coordinated group foragingGroup foraging. Aside from these groups, which may last for many years, most baleen whale groups are reported to be fluid with few strong associations between individuals other than mother and calfCalf. However, most researchers define whale groups in terms of the number of whales that are close enough to be sighted within a certain distance of one another. Sound propagates so well underwater that whale sounds can be heardHeard at distances of tens to hundreds of kilometers away. This means that whales may be able to maintain contact over much greater ranges than are usually assessed by human observers—they may form long-range “heards”Heard in addition to shorter range “herdsHerd.” The social organization of whales during the breeding seasonBreeding season is structured in part by songsSong—acoustic reproductive advertisement displays. The potential scale of “heards”Heard is indicated by the ability of scientists to track one singingSingingblue whaleBlue whale for 43 days as it swam > 1700 km. Scientists will start to develop a fuller understanding of the social organization of baleen whales when they apply methods that can make observations and test hypotheses over the temporal and spatial scales at which baleen whales move and communicate.
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Understanding reproductive physiology in mysticetes has been slowed by the lack of repeated samples from individuals. Analysis of humpback whale baleen enables retrospective hormone analysis within individuals dating back 3-5 years before death. Using this method, we investigated differences in four steroid hormones involved in reproduction and mating during confirmed pregnant and non-pregnant periods in two female humpback whales (Megaptera novaeangliae) with known reproductive histories based on sightings and necropsy data. Cortisol, corticosterone, testosterone, and estradiol concentrations were determined via enzyme immunoassay using subsamples of each baleen plate at 2 cm intervals. There were no significant differences in cortisol or corticosterone during pregnancy when compared to non-pregnancy (inter-calving interval), but there were significant differences between the two whales in average glucocorticoid concentrations, with the younger whale showing higher values overall. For testosterone, levels for the younger female peaked at parturition in one pregnancy, but also had spikes during non-pregnancy. The older female had three large spikes in testosterone, one of which was associated with parturition. Estradiol had large fluctuations in both whales but had generally lower concentrations during non-pregnancy than during pregnancy. There were peaks in estradiol before each pregnancy, possibly coinciding with ovulation, and peaks coinciding with the month of parturition. Both estradiol and testosterone could be useful for determining ovulation or impending birth. Using baleen to investigate retrospective steroid hormone profiles can be used for elucidating long-term patterns of physiological change during gestation. Lay summary: Case studies of two pregnant humpback whales whose hormones were analyzed in baleen may illuminate when humpback whales ovulate, gestate, and give birth. These physiological metrics could assist in accurate population growth assessments and conservation of the species. This study shows that baleen hormone analysis can be a useful tool for understanding whale reproductive physiology.
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In order to exploit seasonally favourable habitats for feeding and breeding, humpback whales Megaptera novaeangliae undertake one of the longest migrations in the animal kingdom. Stored energy is crucial for a successful migration, but few studies have investigated the relationship between migration timing and body condition in baleen whales. Using unmanned aerial vehicles, we quantified the body condition of east Australian humpback whales. We collected data on 513 individuals (48 calves, 166 juveniles, 251 adults, and 48 lactating females) during their northbound and southbound migrations between June and October 2020. For adults and juveniles, we explored the loss of body condition between migration direction (north versus south) as well as the relationship of migration timing (day of year) and body condition. We found a significant loss in body condition between the northbound and southbound migrations for both adults (9.8%) and juveniles (18.3%). However, migration timing did not influence body condition for either reproductive class. Cow/calf pairs were analysed using relative calf length (percentage of maternal length) as a proxy for days postpartum. We found a positive curvilinear relationship between migration timing and calf body condition. However, lactating females showed no relationship between migration timing and body condition. Whilst body condition is important for capital breeding whales, the lack of a correlation found for adults and juveniles suggests that body condition is not the main driver of migration timing from feeding or breeding grounds. However, calf body condition may be a significant factor for the migration timing of cow/calf pairs.
Article
Animal body size and growth patterns play important roles in shaping the life history of species. Baleen whales include the largest animals on the planet, with somatic growth costs expected to be substantial. We used unmanned aerial vehicle photogrammetry and long-term individual sighting histories from photo identification (1991−2019) to estimate the cost of somatic growth for southern right whales (SRWs) Eubalaena australis. A Richards length-at-age growth model was developed, based on 161 calves, 20 yearlings, 1 juvenile and 23 adults, ranging in age from newborn to 27 yr. Predicted lengths were 4.7 m at birth, 12.5 m at minimum age of first parturition (6 yr) and an asymptotic length of 14.3 m. A volume-at-age curve was estimated from the body volume versus length relationship, and converted to a mass-at-age curve, using data on body tissue composition of North Pacific right whales E. japonica (n = 13). The energetic cost of growth was estimated using published estimates of tissue lipid and protein concentrations. The cost of growth for SRWs (in MJ d−1) was 2112 at birth, 544 at 4 mo, 314 at 1 yr (~weaning age), 108 at 5 yr (minimum age of sexual maturity), 51.5 at 10 yr and 5.2 at 30 yr. The cumulative cost to age 30 was 764.3 GJ, but varied widely (458−995 GJ) depending on the tissue energy content. Our estimates represent a healthy SRW population, and provide a baseline to investigate individual and population level impacts of anthropogenic disturbance (including climate change).
Article
Darwin's theory of sexual selection fundamentally changed how we think about sex and evolution. The struggle over mating and fertilization is a powerful driver of diversification within and among species. Contemporaries dismissed Darwin's conjecture of a "taste for the beautiful" as favoring particular mates over others, but there is now overwhelming evidence for a primary role of both male and female mate choice in sexual selection. Darwin's misogyny precluded much analysis of the "taste"; an increasing focus on mate choice mechanisms before, during, and after mating reveals that these often evolve in response to selection pressures that have little to do with sexual selection on chosen traits. Where traits and preferences do coevolve, they can do so whether fitness effects on choosers are positive, neutral, or negative. The spectrum of selection on traits and preferences, and how traits and preferences respond to social effects, determine how sexual selection and mate choice influence broader-scale processes like reproductive isolation and population responses to environmental change.
Article
Creating a baseline understanding of communicative signals and perceptual abilities is imperative for gaining insight into a species' life history. This is especially relevant for at-risk species, as it can aid in monitoring and conservation efforts. Marine mammals communicate predominately through acoustic modalities for a variety of functions, including foraging and reproduction. The acoustic signals produced by marine mammals, and their ability to perceive signals produced by conspecifics, are directly impacted by the level of ambient noise in the underwater environment in which they inhabit. Modern ocean noise levels are considerably louder than historical levels, and noise is therefore considered to be a threat to acoustically communicating marine mammal species. This review summarizes the documented acoustic signals, hearing abilities, and responses to sound of a critically endangered baleen whale, the North Atlantic right whale (Eubalaena glacialis), highlights gaps in the current body of literature, and identifies priorities for future research.
Thesis
Polygynous mating systems are common among terrestrial mammals, and are typically characterized by a skewed operational sex ratio, competition among males for females, variation in reproductive success (RS) among males and the evolution of alternative mating tactics. Little is known about mating systems of marine taxa due to difficulty of observing individual behavior and determining paternity. Humpback whales are thought to be polygynous with differences in reproduction among males related to alternative mating tactics. However, there is currently a lack of data on male RS. I tested predictions regarding male RS in humpback whales using the molecular assessment of paternity in a population in the Mexican Pacific. Parentage analysis for 125 mother-calf pairs and a sample of 297 males, genotyped for 13 polymorphic microsatellite loci, resulted in putative paternities for 30--50% of calves. The distribution of male RS deviated significantly from a random mating model. However, reproductive skew was not severe: most fathers sired only one calf and no male was assigned more than three calves. Most current measures of skew report a single value that describes variance but not the underlying statistical distribution of RS. I describe a procedure to estimate reproductive skew in terms of the population-wide distribution of RS using a simple simulation of mating, specifically for datasets with incomplete sampling of offspring and males. For my humpback whale data, I found that the best-fit mating model was an approximation of a gamma distribution, only slightly skewed beyond a Poisson distribution. Therefore I conclude that this population has a polygynous mating system, but without the large variation in male RS typical of some systems of this type. Successful males employed diverse mating tactics, with significant variation among the proportions of four alternative tactics used by fathers. Most fathers were observed to employ all tactics to varying degrees, although some appeared to favor specific tactics such as physically competing for females or escorting mothers. The latter, a tactic generally considered low pay-off, may in fact contribute significantly to overall male RS. Implications of these new findings are discussed in relation to the current understanding of this mating system.
Article
The goal of the present study was to complement existing data of testosterone and progesterone in blue whale (Balaenoptera musculus) blubber from the eastern North Pacific Ocean to evaluate effects of seasonality and location on these hormones, and to better assess reproductive status of individuals. Physiological parameters regarding reproduction are fundamental for describing population dynamics, and hormones can be a valid tool to estimate those for wildlife populations. In this study, blubber tissue was validated for testosterone and progesterone assays. Hormone concentrations were measured in 69 (35 males and 34 females) blubber samples from live (n= 66) and stranded (n= 3) animals collected between 2002 and 2016 from a known winter reproductive ground in the Gulf of California (GoC) and summer feeding areas along the United States West Coast (USWC), specifically off the states of California and Oregon. Results were combined with sighting histories as a tool to determine reproductive status of individual whales. Testosterone concentrations in adult male blue whales were significantly higher (p< 0.05) in blubber biopsies sampled off the USWC between the months of June and November compared to those sampled in the GoC between February and April. Elevated testosterone concentrations likely indicate physiological preparation for reproductive activity while the animals were present off the USWC. Progesterone concentrations were significantly elevated in pregnant females, confirming progesterone as an indicator of pregnancy in blue whales. Probabilities of being pregnant were estimated for adult females with unknown sighting histories based on progesterone concentrations. Testosterone in females was detected and measured only in pregnant whales suggesting its biosynthesis or metabolism is altered during gestation. These results provide updated and new information on the reproductive cycle of blue whales in the eastern North Pacific, posing new milestones to better estimate the timing of the mating season for this endangered population.
Article
Recovery rates for baleen whales that were decimated by exploitation vary between species and populations. Age determination is critical for the understanding of recovery trends and population structure, but determining age in free‐ranging individuals remains challenging. Recent research has suggested that the methylation level of some genes in skin samples may provide age determinations with accuracy. We selected nine CpG sites from three genes (TET2, CDKN2A, and GRIA2) and analyzed them in 40 skin samples from known‐age individuals pertaining to two different populations of fin whales from the North Atlantic. We observed significant correlations with age in five CpG sites. We used three of these CpG sites to perform an epigenetic age estimation. Predictions had a standard deviation of 2.94, but regression between observed and predicted ages showed a clear underestimation for older fin whales. For further development, we suggest: (1) screening for new CpG sites associated with age that exhibit higher variability between individuals, and (2) including older animals whenever the sampling allows it. We also observed subtle, but significant differences between the two populations studied in one of the CpG sites (TET2_CpG + 21). We attributed these differences to genetic differences or to the dissimilar environments that affect both populations.
Chapter
An understanding of the functional morphology of the bowhead whale continues to have significance for population management. This chapter first examines the anatomical features of the bowhead whale reproductive system, with an emphasis on the female. This is followed by a consideration of the functional parameters of the female reproductive cycle, testicular function in the male, and the age at sexual maturity in both sexes.